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| Line 20: |
Line 20: |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]] |
| − | GeneName = Os08g0178100|
| |
| − | Description = Pep3/Vps18/deep orange domain containing protein|
| |
| − | Version = NM_001067661.1 GI:115475058 GeneID:4344807|
| |
| − | Length = 9718 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os08g0178100, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
| |
| − | AP = Chromosome 8:4570025..4579742|
| |
| − | CDS = 4570089..4570271,4570355..4570568,4570684..4570823,4570929..4571024,4571426..4571493<br>,4571889..4571990,4572839..4572977,4573105..4573245,4573330..4573449<br>,4573588..4573644,4573747..4573806,4574213..4574320,4575181..4575341<br>,4575800..4575878,4576476..4576538,4576704..4576837,4577193..4577298<br>,4577591..4577779,4577942..4578169,4578375..4578530,4578838..4579002<br>,4579099..4579215,4579292..4579468|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008401:4570025..4579742
| |
| − | source=RiceChromosome08
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008401:4570025..4579742
| |
| − | source=RiceChromosome08
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggacgccgccgccgccgccttcgcccccggcgggcagctcttctccgtcgatcccctcgagcggcacgcggcgaggggccatggcgtggtcacctccatggctgccggcagcgacgtcatcgtcctcggcacctcccgcggatggctcgtccgccacgacttctccttcgaggacgcccatgatctcgacctcgggaccggccgctccggcgagcactccgtgcaccgcgtcttcctcgaccccggcgggaagcactgcgtcgccacggtggtccacccggggggcgccgagacgtactaccaccacgccaggtggccgcgccccaagctgctcccccgcctccgcaacgtcctcgtcaatgccgtcgcgtggaaccgccaaaccatcaccgaagcgtcgaccaaggaggtgatcctggggacagaggatgggcagatcttcgagattgcagtagacgaggccgacaagaaggagaagtatgtgaagtcgctctttacgctctctgagctgcaggagggcatcaagggcctgcagatggaaaccgccgtggttgggaacgccacaaggttctatgtgatggctgtcacaccaacacggttgtactcattcacgggcatcggttcattagaaactgtttttgctagctattctgatcgtgcgatacactttatggagctcccaggagatattccaaatagtgaattacatttctttatcaagcaaagaagggctaagcattttggatggctttctggagctggaatttaccatggtgaactgaattttggagctcaacacagctctacaagtggggatgagaactttgtcgaaaataaaggtttttttgactactcaaaattgggagaatctggtatcaagccaaggtcatttgcattgtctgaattccattttctgcttctcatcagggacaagattaaggtagtgaacagaatcagccagcaaatagtggaggaacttatagtcgatagttcaccagaagttacaaaaggaataattggactttgtagtgatgcatcaactgggcttttctatgcatacgatgaaaattctatattccagatttcatcatctgatgagggtcgtgatatgtggcaagtatacctggacatgaaagaatatgctacggcactgtcacattgtcgtaactccttccagagggaccaagtctatctagtgcaggctgatactgcattcaatacaaaagagtactatatagcagcttccttctatgcaaagatgaattatatcctatcatttgaggagatcagcttaaaatttatatctgttggtgagcaggatgctctcaggactttcttgttgagaaggcttgataacctaacgaaagatgacagaatgcagattacaatgatctcaacttgggctactgagctgtacttggacaagattaatcgcctcctgttggaagatggcacaggagccacgtcaaatgctgtagcagattctaaagactcggaatatcgttcaatagtaaatgaattccgtgcttttctaagtgatagcaaagatgtattagatgaggcaacaacaatgagactgttggaaagttatgggagagtggatgagctggtttattttgctggtttaaaggagcaacatgaaattgtggttcatcattacattcagcaaggagaagcaagaaaggcattggaagttcttcagcgacataatgttctagtagaccttgtgtataaatttgctccagatttaatcatgttagatgcttatgaaactgttgaatcatggatgatggcaagaaataagttgaatccagggaagcttataccggcaatgatgcgttatgtgagcgaaccacatgccaagaatgaaacacatgaagttatcaagtacttggaattctgtgtaaaagatttgaacaatgaggatcctggagtgcataatttgttgctctcactgtatgccaagaaggacgatgagtctcagcttttgcaattcttggacactaagtttggtaaaggacagacaaatggccctgagttcttttacgaccccaaatatgctctgcgtctatgtcttcaagagaagagaatgcgtgcttgtgttcgtatttacagcatgatgtccatgcatgaagaagctgttgcacttgcattaacggtggacttagagcttgcaaaagcagaagcagataaagttgaagatgatgaagaacttagaaagaagctgtggcttaaggttgcaaagcatgtcattgagcaagagaagggagtcaagagggagaacataaagaaagctatagaattcctatcagagactaacaacttgttgaagattgaggatatcctgccatttttcccagacttcgtattgatcgatgactttaaagaggaaatatgcaaatctctcaaggactatgacagccaaatcgatcagctgaaacaggagatggatgatgctactcgtggggcagacaacatcagaagtgatattggtgcccttgctcagagatacactgtaattgatcgtgaggaggaatgtggggtgtgcaagcgcaaaatattgactgctggaggactgcaccaggtaggaagaagctacacatctaccggacacatggcccccttttatgtgtttccttgtggacatgcctttcatgcgaattgtttgatcgcacatgtaactcgttgtaatagcagccaaacacaagctgaaaaaatactggacctccaaaagcggcttagcctaatggacaggaaagcagcaaaggaaaatggcggaaacatgaatggtgaatctattatcagtgcgacaccaattgacaagttgaggtcccagctggatgatgctgtagcgagcgagtgccccttctgcggcgatctgatgatcaaggagatttcattgcctttcattctccctgaagagtctgatgaaaaggcttcgtgggaaattaaaccgcaaccaacgggtcagaaaattcttccaatgaccatgtctatatga</cdnaseq>|
| |
| − | AA = <aaseq>MDAAAAAFAPGGQLFSVDPLERHAARGHGVVTSMAAGSDVIVLG TSRGWLVRHDFSFEDAHDLDLGTGRSGEHSVHRVFLDPGGKHCVATVVHPGGAETYYH HARWPRPKLLPRLRNVLVNAVAWNRQTITEASTKEVILGTEDGQIFEIAVDEADKKEK YVKSLFTLSELQEGIKGLQMETAVVGNATRFYVMAVTPTRLYSFTGIGSLETVFASYS DRAIHFMELPGDIPNSELHFFIKQRRAKHFGWLSGAGIYHGELNFGAQHSSTSGDENF VENKGFFDYSKLGESGIKPRSFALSEFHFLLLIRDKIKVVNRISQQIVEELIVDSSPE VTKGIIGLCSDASTGLFYAYDENSIFQISSSDEGRDMWQVYLDMKEYATALSHCRNSF QRDQVYLVQADTAFNTKEYYIAASFYAKMNYILSFEEISLKFISVGEQDALRTFLLRR LDNLTKDDRMQITMISTWATELYLDKINRLLLEDGTGATSNAVADSKDSEYRSIVNEF RAFLSDSKDVLDEATTMRLLESYGRVDELVYFAGLKEQHEIVVHHYIQQGEARKALEV LQRHNVLVDLVYKFAPDLIMLDAYETVESWMMARNKLNPGKLIPAMMRYVSEPHAKNE THEVIKYLEFCVKDLNNEDPGVHNLLLSLYAKKDDESQLLQFLDTKFGKGQTNGPEFF YDPKYALRLCLQEKRMRACVRIYSMMSMHEEAVALALTVDLELAKAEADKVEDDEELR KKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIEDILPFFPDFVLIDDFKEE ICKSLKDYDSQIDQLKQEMDDATRGADNIRSDIGALAQRYTVIDREEECGVCKRKILT AGGLHQVGRSYTSTGHMAPFYVFPCGHAFHANCLIAHVTRCNSSQTQAEKILDLQKRL SLMDRKAAKENGGNMNGESIISATPIDKLRSQLDDAVASECPFCGDLMIKEISLPFIL PEESDEKASWEIKPQPTGQKILPMTMSI</aaseq>|
| |
| − | DNA = <dnaseqindica>65..247#331..544#660..799#905..1000#1402..1469#1865..1966#2815..2953#3081..3221#3306..3425#3564..3620#3723..3782#4189..4296#5157..5317#5776..5854#6452..6514#6680..6813#7169..7274#7567..7755#7918..8145#8351..8506#8814..8978#9075..9191#9268..9444#aatcgcatcgcctccgacgagctcgcggcggccggccggcgaggcgactgcgactccgacgaccatggacgccgccgccgccgccttcgcccccggcgggcagctcttctccgtcgatcccctcgagcggcacgcggcgaggggccatggcgtggtcacctccatggctgccggcagcgacgtcatcgtcctcggcacctcccgcggatggctcgtccgccacgacttctccttcgaggacgcccatggcacgtcctcccctcctcgccctcgcagccgccatcttcgccgccgcctcgcgcttccgctgatcgctcctctgctgctgcagatctcgacctcgggaccggccgctccggcgagcactccgtgcaccgcgtcttcctcgaccccggcgggaagcactgcgtcgccacggtggtccacccggggggcgccgagacgtactaccaccacgccaggtggccgcgccccaagctgctcccccgcctccgcaacgtcctcgtcaatgccgtcgcgtggaaccgccaaaccatcaccgaaggtgagctaatactactgcatatactgttcctcgatcgaattgtgtctcgattccggcagtccgtgctgtgtatttgttcttgattgtggagttgtttgtggtttcggtgctgtagcgtcgaccaaggaggtgatcctggggacagaggatgggcagatcttcgagattgcagtagacgaggccgacaagaaggagaagtatgtgaagtcgctctttacgctctctgagctgcaggagggcatcaagggcctgcaggttcgagtttgttgccagaggccatcgagggctgcggttctgtacttgtgttgtgttggtgttatttggttggaatgagcgtgatggaggaatttggttgtgcagatggaaaccgccgtggttgggaacgccacaaggttctatgtgatggctgtcacaccaacacggttgtactcattcacgggcatcggttcattagaagtaagtacaattgctcaattttatcagctccaaatttcggagacatacaccattatagaatgtaatgggagcaatctagatcgaatttagtgaaaagaaagacccagatttttcacttcggatatcaaagtcctcatggacggtgtttcttgatttaataacgtgactcagtaacctcgaaagtgctatactacgcgaagtcagtatgcctcttttcttacagagagatatgcgtgattagaacagcttgtgatgccttttgccattttagagagcagcattgcatgccaacagtttctatagaagattttctcttggtttccagaatttcagccctacaagatttatttgtttactcattttctcttgatgtaatatctaataacaactatattgcacagactgtttttgctagctattctgatcgtgcgatacactttatggagctcccaggagatattccaaataggtgagtataagggcaagtgctatggtagatgtgactaccacctccaaatttatctattttattcactcataaactaagaggcaatccatacaatgtatcacctctagtacacaaataccaatatatctaatactctcacatccttcttgaaatttgtgtggaggttgcctcttgatttaggggtggctcatcatctctctcctcacttctttccttcacatcatcactcaatccaatgtggcattcttaggggcaacatatgggtcattatagtacttgccctaactttatgtgatttatacagtactatacagtggtaactacagtttgtgccacccactagaatactttcttttagtgagcttatgacaatgtatccattgcatggaatccagtgaattacatttctttatcaagcaaagaagggctaagcattttggatggctttctggagctggaatttaccatggtgaactgaattttggagctcaacacaggtgaactgtagtttttggatttaagttgattccatcatgtaacatgtaactgaagtggattattaacttatgttttctttgttatctaatccaaatgtcattgaactgctaagctgctagcattctcttagtgggcatatttttctaatagactgagccttggtgtgccttttgaccttataagaaatgtggcaagtaatgtaatcccccactcctaaacataagttctttagggaaatgtaaagtagctactttggcctcaggaaaaacaataatagttttctcatcaagataatcaaattgtcatcttactaataatataaatataaagtgtggtagaatgatgatagtcatacaagaattaatgatcaatgttatgccttcaagaacttgatgtcaatcatgtcactggatattatctatgaacagaactataggactacatgagtaccttagaagattatatctaatgaatgttcagggttttatatattgcaaaccttatgcacttcaaacttgataattctctgctagctgtttgagcttctctttagagacatgcatgccaatctcactgagccaggtgttggcactggcacactgcatgtgtgcaccttcttacttaagtgtattttgatgattatatataaaagaactacttttacagttttatgaagttcggctccatgaactcttaggatctcaatatgacactgttttttctttcctttgggataacttgcagcacttcttttattagtttgtctcccattctataataataaccatataattacttttttctgtattttctatagtaatttgttaaactaaatttagttttgcagctctacaagtggggatgagaactttgtcgaaaataaaggtttttttgactactcaaaattgggagaatctggtatcaagccaaggtcatttgcattgtctgaattccattttctgcttctcatcagggacaagattaaggtacaattctttttaaaaaatctatactgttttcactgtgattcattttgctttctgtcactattttgtcttccctgttgttttatgtattcctttacaaagcaaaagcataacctgtgatttttaggtagtgaacagaatcagccagcaaatagtggaggaacttatagtcgatagttcaccagaagttacaaaaggaataattggactttgtagtgatgcatcaactgggcttttctatgcatacgatgaaaattctatattccaggttagagactatctgattcttgctttgatgtaataattgccttcagagtccagaattgtgttgctgatgaagctatatatttagatttcatcatctgatgagggtcgtgatatgtggcaagtatacctggacatgaaagaatatgctacggcactgtcacattgtcgtaactccttccagagggaccaagtctatctagtgcaggtgatgtttatttgcacttcgatcccatgcactacttttttctcctttattattttcccctctatgataagctggaccttttttgttttgtgatgatcaatgacttctgttattgtataaatatcttctcttttgtaggctgatactgcattcaatacaaaagagtactatatagcagcttccttctatgcaaaggttaaacccacactgtttaattctgttccttatttttttaaaaaaaaagattttgttgtcctgttcacgttgatactaaaaaatatattctcttggtttcagatgaattatatcctatcatttgaggagatcagcttaaaatttatatctgttggtgagcaggtagtttagtctgaacttctttttttcttttttctttttttttgtgaggagtctgaactttctaatatggtatattattgcatgtttgtgtaagatctatctttctaaaatactcatctgccatttgatattgtcaagagcttctctgagatatctttgcttattgatgtattcaattgttttttttttccctgatctttgtcactgatgcaaagttcaagtgttgctagttccaagattgataatttgaaatataatataatgccgttaacattgtgaaaacatagaggaaatgttctgtcatgctttggtacaatctaagattcattctagtgtaactatttacatgatacatgagaatattgtgattttatttatgaaataattatcttcctcaacttgacaggatgctctcaggactttcttgttgagaaggcttgataacctaacgaaagatgacagaatgcagattacaatgatctcaacttgggctactgagctgtacttggacaaggtaccaattgtttgtttttcaaccttctaaactaatataacagtcttcatgacaagaaggctggtgtcctattttcattgtttgtacgtatcctttttttcctgctcttaatacaaagatacacagtcctctgtattgttgagaaaaaggtaataccagggccggccctagggggggtcaggccgtgcggccacccgaggcccccaaaatctaggggccccctatgcacatacagtatatatactatgtattgtataattctagtccacgtgccatggatctatattaagttagatagctgaatagcctaatacagaaaatgaaatttagtccatcgttaggcctgttttaacgaagccgaagcaatcttcatttgactcctgtcgctttgccttgatcacatcacgccactcacgtcatgccgcctcgatcacgtcacgctgctcctgcgctctcggtgacttctcggcgtctcgcaaacgaaaacagcaagttggcaaatcgcgactcgccagtaaccacgctcgtgtcaatcgtccgccggtcgacttctctgctcgctactgctatttatttctcattggagttttaaaatgttatatatagataattttgtcacatcgaatattaaatggtatgtgtttatcagactatataaatatataaattagtttatgtatatatgtaggggcctccatataagtttttgccctgggcccccaaaaccccaggaccggccctgggtaatacaagatatgttccattgctattggaaatctttcttcagtcttggtttcagtatacttgtacttgtgattattgcgggggcttatccagtatatttggtgcaatatttgtagattaatcgcctcctgttggaagatggcacaggagccacgtcaaatgctgtagcagattctaaagactcggaatatcgttcaatagtaaatgaattccgtgcttttctaagtgatagcaaagatgtattagatgaggcaacaacaatgagactgttggaaaggtatgtggtaccattgttgcacaatatgcttcactggtattttaggttgtttaaattctcatatatgtattgtacaggtaacttacatatctttggatagaacctgcataattttaatattccatacattaatactatatttaaaattgttgaacatttgccaaacaaaggacctgatttaatgtccatttgctttaaactcagggctttgtgtacaaccagtaggatttgttctattaagaaggatatcatctttgagccttcaatagctcatttatttaaaaggggaaatgcagcaagactgcaaactgcatcaatggatagactataaaatatttcattatttagtttatgcaattctgttgacttgtcatgaataagatggcggtgtgttctctccatttgttgtgttgctgattatatgtgttccccaactggtaccttgaaaccttttgcagttatgggagagtggatgagctggtttattttgctggtttaaaggagcaacatgaaattgtggttcatcattacattcaggtcagtgtcaggcatttatcatctaaaggtgttaaatactaatttgtgtcgagcataacaatagtaaatagtataatctgccaagtgctagctagtattaacattatgtttgctaatatgtttgagcaagcaaagatatgcataccttgattatcggcctataatgggtgataagagcttgtttatgccacaaactaattgattattttatagaacagttcatgtaacatgtgctgggatggggcttgtgccagccagatatttcaggctaggctatgctttgagcaggctcaatgccagcatgatcttgcattcttaccatagtctaacatcaaatttcccttctatctgttctcttgagcaactgtagtttctatatcattcttctttgtagaatagttggaaaggaaacatttataatattactggagttcgttgcacatctttctttgaagccaattgcttcaaaatcattgcattcagttatcttgaaaatacaagttttttacttattatatgaggtaccttttgcacttggaacccattggcattagctgagatgtcaagtccttatgcattttctatttactttgtcagcaaggagaagcaagaaaggcattggaagttcttcagcgacataatgttctagtagaccttgtggtacataatggctttacatttattctttgaatgctgcagtatagaactcaaaataagtttattattgattctaccacaacaaggttacattttctgttttacacaaaattacacatttaatattttttaattctagccgttgctctttaacttgtttttgtgcagtataaatttgctccagatttaatcatgttagatgcttatgaaactgttgaatcatggatgatggcaagaaataagttgaatccagggaagcttataccggcaatgatgcgttatgtgagcgaaccacatgccaagtatgatatgctaatggcttcttatacgttcctattcccctattgctataatactatatgaatcctttaatattatgtgatatcttaacagttgacagccttaccgtcttttatcacaccagggaactctgaatgctatatataaaaacattgttactattgaaacgaattttgctactggtggaagtgaatttagatctgttacacttaaatcccatatcagatagtgataattcgaatcaaacctaagaatgcctaaactccctatgttcagaagctctggaacaaactgcaattctatgtagccaacttgatttccataatcaggatgatgtgatgaattcaactcttgcaggaatgaaacacatgaagttatcaagtacttggaattctgtgtaaaagatttgaacaatgaggatcctggagtgcataatttgttgctctcactgtatgccaagaaggtagctcttccagtagtgcattatttgttgctcttgctgtgtgtgaaattacactttatattcttacaaagtaggaaaaatatcatgtaattaattttgttgtgtatgtttcttttttatgtgttggaaacattaaactgtaatagcagtaattgcttactttgcactcaattcatcattcatgtttctggtggttcttatgaggttgtcaatgccataccagtcaagcgtatatttgtcaacacatataactaatgattttgtatgtgtactctggtttattcatgtgcaggacgatgagtctcagcttttgcaattcttggacactaagtttggtaaaggacagacaaatggccctgagttcttttacgaccccaaatatgctctgcgtctatgtcttcaagagaagagaatgcgtgcttgtgttcgtatttacagcatgatgtccatgcatgaagaagctgttgcacttgcattaacggtaaacctcattcctcactaagtctcatcatttctttaagagtctactaattccattcaataagcatcccttgcgctttcgcatattgatggtgtaggattttgaagtgttcttatttttatgaggctttcttattcctttactcaatttggtccttgctaggtggacttagagcttgcaaaagcagaagcagataaagttgaagatgatgaagaacttagaaagaagctgtggcttaaggttgcaaagcatgtcattgagcaagagaagggagtcaagagggagaacataaagaaagctatagaattcctatcagagactaacaacttgttgaagattgaggatatcctgccatttttcccagacttcgtattgatcgatgactttaaagtaagatataagtccaggcagtcagctgctttacagaaaaattcctcctaatgtccatttctctgttgaagatccacaactgcaattttcttattaacaaaaaagttatctgaatgaataaatttcgttgttaattattactagtccacattttctgcattacctcttttctcagcattaacagtgaaaaatattgtctaaacaggaggaaatatgcaaatctctcaaggactatgacagccaaatcgatcagctgaaacaggagatggatgatgctactcgtggggcagacaacatcagaagtgatattggtgcccttgctcagagatacactgtaattgatcgtgaggaggaatgtggggtaagaaactgctcacgatacccaaaatggtgtagtttaactaatgttgtgcctgttcttttctttatatggtgttacatgagtttccttgttttcgtttcaaataagtaaagatgcaaatatgcaacaaagaggaaagatgacccccacgctatattgtttaatatttgtgttcttggtattgcttgttttctcaagtacacttaaaattattttttccattttgattcagatggttttatgaacttatgtactaactgtcttcgctgctatatcatggtgttaactcctcactgtgcattaacaggtgtgcaagcgcaaaatattgactgctggaggactgcaccaggtaggaagaagctacacatctaccggacacatggcccccttttatgtgtttccttgtggacatgcctttcatgcgaattgtttgatcgcacatgtaactcgttgtaatagcagccaaacacaagtaagtccctatgcaacatttcaattgttcatttccttattttgatagttcaatctcttgtaccaattagttacggatgaattcatttacctgtaggctgaaaaaatactggacctccaaaagcggcttagcctaatggacaggaaagcagcaaaggaaaatggcggaaacatgaatggtgaatctattatcagtgcgacaccaattgacaaggtttggtcacatccaaactacgaaatcccgagatctgcatttcttgtactaatgccatgcatgtttcttgtgacagttgaggtcccagctggatgatgctgtagcgagcgagtgccccttctgcggcgatctgatgatcaaggagatttcattgcctttcattctccctgaagagtctgatgaaaaggcttcgtgggaaattaaaccgcaaccaacgggtcagaaaattcttccaatgaccatgtctatatgattctactagtaaaagctgagatggaatagaatgtttttcgagtttgtatgtgattttgtaatgctgaatatatgctctttcatgtccaatttctggttgggtggctttggtttttgataattgcccagctcgtgtatctttctgacgagcagaacattagctatcctatccagaatagtttgtgtacagaaacatcatcttccacttcacttgggctcttgtacatgcctcctttcatcaactttgctcataataaagttgcgatttgttaggg</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067661.1 RefSeq:Os08g0178100]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 8]]
| |
| − | [[Category:Chromosome 8]]
| |
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Annotated Information
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Structured Information
