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| − | Please input one-sentence summary here.
| + | The rice '''''Os08g0472000''''' was reported as '''''OsbZIP66''''' in 2008 <ref name="ref1" /> by researchers from India. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os08g0472000''''' '''<=>''' '''''OsbZIP66,OsbZIP, bZIP66''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * The basic leucine (Leu) zipper (bZIP) proteins compose a family of transcriptional regulators present exclusively in eukaryotes. |
| | + | * The '''''OsbZIP''''' proteins characteristically harbor a bZIP domain composed of two structural features: a DNA-binding basic region and the Leu zipper dimerization region. |
| | + | * bZIP proteins have been shown to regulate diverse plant-specific phenomena, including seed maturation and germination, floral induction and development, and photomorphogenesis, and are also involved in stress and hormone signaling. |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * The researchers from India find specific or coexpression patterns of rice bZIP transcription factors starting from floral transition to various stages of panicle and seed development. |
| | + | * bZIP transcription factor-encoding genes in rice also displayed differential expression patterns in rice seedlings in response to abiotic stress and light irradiation. |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| + | * The phylogenetic relationship among rice bZIP domains as well as with bZIP domains from other plant bZIP factors suggests that homologous bZIP domains exist in plants. |
| − | | + | * Similar intron/exon structural patterns were observed in the basic and hinge regions of their bZIP domains. |
| − | You can also add sub-section(s) at will. | + | * Detailed sequence analysis has been done to identify additional conserved motifs outside the bZIP domain and to predict their DNA-binding site specificity as well as dimerization properties, which has helped classify them into different groups and subfamilies, respectively. |
| | + | <br> |
| | + | '''''You can also add sub-section(s) at will.''''' |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Nijhawan A, Jain M, Tyagi AK, Khurana JP. Genomic survey and gene expression |
| | + | analysis of the basic leucine zipper transcription factor family in rice. Plant |
| | + | Physiol. 2008 Feb;146(2):333-50. PubMed PMID: 18065552; PubMed Central PMCID: |
| | + | PMC2245831. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]] |
| − | GeneName = Os08g0472000|
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| − | Description = TRAB1 (BZIP transcription factor)|
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| − | Version = NM_001068553.1 GI:115476843 GeneID:4345807|
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| − | Length = 6148 bp|
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| − | Definition = Oryza sativa Japonica Group Os08g0472000, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
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| − | AP = Chromosome 8:23322483..23328630|
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| − | CDS = 23322496..23323251,23323491..23323562,23325035..23325088,23328357..23328431|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008401:23322483..23328630
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| − | source=RiceChromosome08
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008401:23322483..23328630
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| − | source=RiceChromosome08
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atgaacatggacgagctgctgcggagcatctggacggcggaggagagccaagcgatggcgtcggcgtcggcggcggcggcggcggcggaggggggcctgcagaggcaggggtcgctcaccctgccgcgcactctcagcgtcaagacggtggacgaggtgtggcgggacttagagcgagaggcgtcgccgggggcggctgctgctgacggcggcggcggcggcggggagcagcagcagcccaggcggcagccgacgctcggggagatgacgctggaggagttcctggtcagggccggggtcgtcagagagaataccgctgcggcggctgctatggtagctgcggccgccgctccgccggtggctccgcggtcgattccggctgtcaacaacagctccatcttcttcgggaactacggaggcgtcaatgatgctgctgctgccgctgctggtgcgatgggtttctcaccggtggggattggggatccgaccatggggaataggctgatgtccggagtggcagggattgggggtggtgcgatcactgttgctccggtggatacatcagttggacaaatggattcagcgggcaagggggatggggacctgtcatcaccgatggcgccggtgccgtacccctttgagggggtgataagggggaggaggagcggtggtaacgtggagaaggtggtggagcggcggcagaggaggatgatcaagaacagggagtcagcagctagatctcgtgcccggaagcaggcttacacaatggagttggaagctgaagttcagaaactcaaggaacagaacatggaattgcagaagaaacaggaggaaattatggaaatgcagaaaaatttcttcccagaaatgcagaaaaatcaggtattagaggcggtcaacaatccttacggacaaaagaagcgttgcctaagaagaacattgacaggtccctggtaa</cdnaseq>|
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| − | AA = <aaseq>MNMDELLRSIWTAEESQAMASASAAAAAAEGGLQRQGSLTLPRT LSVKTVDEVWRDLEREASPGAAAADGGGGGGEQQQPRRQPTLGEMTLEEFLVRAGVVR ENTAAAAAMVAAAAAPPVAPRSIPAVNNSSIFFGNYGGVNDAAAAAAGAMGFSPVGIG DPTMGNRLMSGVAGIGGGAITVAPVDTSVGQMDSAGKGDGDLSSPMAPVPYPFEGVIR GRRSGGNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQ EEIMEMQKNFFPEMQKNQVLEAVNNPYGQKKRCLRRTLTGPW</aaseq>|
| |
| − | DNA = <dnaseqindica>14..769#1009..1080#2553..2606#5875..5949#ggatttcgggtcgatgaacatggacgagctgctgcggagcatctggacggcggaggagagccaagcgatggcgtcggcgtcggcggcggcggcggcggcggaggggggcctgcagaggcaggggtcgctcaccctgccgcgcactctcagcgtcaagacggtggacgaggtgtggcgggacttagagcgagaggcgtcgccgggggcggctgctgctgacggcggcggcggcggcggggagcagcagcagcccaggcggcagccgacgctcggggagatgacgctggaggagttcctggtcagggccggggtcgtcagagagaataccgctgcggcggctgctatggtagctgcggccgccgctccgccggtggctccgcggtcgattccggctgtcaacaacagctccatcttcttcgggaactacggaggcgtcaatgatgctgctgctgccgctgctggtgcgatgggtttctcaccggtggggattggggatccgaccatggggaataggctgatgtccggagtggcagggattgggggtggtgcgatcactgttgctccggtggatacatcagttggacaaatggattcagcgggcaagggggatggggacctgtcatcaccgatggcgccggtgccgtacccctttgagggggtgataagggggaggaggagcggtggtaacgtggagaaggtggtggagcggcggcagaggaggatgatcaagaacagggagtcagcagctagatctcgtgcccggaagcaggtcatacctctgccctaaattcttgcatgtgttgcatatgcagctgtttgctattgcaaatggttgtgatagaaggggaaaatagtatcacaaatctggtaaaaccggcttgtcgagattgggtccttgctgtgttgaacacaacggataatcccaaaatatttatcggtaaagggaatcttgattcgcatgtttatatgttgctttgacactgaaatttgctccattgtgattactaggcttacacaatggagttggaagctgaagttcagaaactcaaggaacagaacatggaattgcagaagaaacaggtactaattcaatgtatctttcatcaaaagacttcctaacaatgatgcatcacattttatttgttccatctgtacatcatcttcactatgctacagtattccaccagttttttaacaagtaaattttcaccagtgtcagtgtagcaaatgtttgctaaaatattcagtgtgcgctttctaaaagtaggcctgtagtaaatttcaaaattgagtgagacactaaggcataactgaaccatttgtgaaagaggtggggccatagcttgaaatatgtatgatgaaacttgaatctctgttacctttcaaacctagcagccataattttgacttgaattccatttgtgacagctttgtaacttttgcattagcatgctgtgatgcaacttcagacgggatacttcaaaattgtcttattgcttgaactagtaatattttggtggacttgcttcagtacaggtctttcttttaaggaactagtaatatctcatagaaaagtttacaaatccagtaacttattaaatgattcaaataagatatttgctcccacatgtttttcagaacgatagctgtatgtaacatctaatctcttttgttcatgctgatacagatttgccgttgtctaatattaactacttcgcctttaagattcatatttttttttctgaaaaaatagcactgaaacaaggtgtcacatgcaacataggtgtgtatgtttgtgtgctccaaaggcaaatactaacacagttatcccttttgtactatctactctaaaactaaattgttaatttgccattaagttgtagctgtatactcaattttgtccacttgaattgaaccaaagggaaacaaatcaaacccattttggaagacgtgtaaatttgtactaaatttgtatttctgccctagattttgatcaggtattcaccttacaaatatcagggcaggggcctaaatgccatgaccatacaacctagtttcatctaccttattattgtttaatatcataactagttcgtggagcagtctaatgactgatcattgtctctttgtcatgttttttttttcaagaaggaaacattaaggccttctttggatgcaagtggattatgtccattcccttcagaatgagagggaagctgtactaaattcccttctcatctgaagtccttgtgcaataaagtcctaagtggttctgttcgttttcggtgttattgattattctatcttatcaagactgaacttatgactatttcaaaaccaatattaatcttttataccatcttgtaaaatttaaagaccggttcataccaccatatacattttttttttgggataaccttcaccggtattcataatttggagggaattgcatccttgaagagcataacaataccttaagcatctttgggtggatgccaatggtaaacgattgtttgtagctttcttacattgtttctttcttaattatgcaggaggaaattatggaaatgcagaaaaatttcttcccagaaatgcagaaaaatcaggtaaatgttttggtcaaacttatgtttgtgttttgtaatattctaatgagtaaactgtgtctacaatacataaatttggtaggtgtgtgcgatctagtgcaagaacttaaaaaatgagcatataagtgcaataacttggctagtgcatgcattttggttaaaagatcgatattctacatgatatatactccctctatttcaggttataagacgttttgactttggtcaaagtcaaactgctttaagtttggccaagtttgtagaaaaaagtagtacactagatcgcacccacctatcaagttcttgtaccgggggtgcaatttactctattctatttcatctgtctgatacataaaaactccatgttagctatctctagcagtggaacacagttctgttgctgttagttgttactacatttttgttagagaagttgacatggtactctctacataagtacatgttatattgcatttgaacgacttgacttctccattgaacgacttacatgtttttattctcttttttgtgatagctggaaaacttggaactgcattgttggtgcttgcctatattccattagctctgctaaaatattttcccttacattttcaagttgtttttattttccatattgaacatttaatgatacatttacaacatataataaatattcatcaaattaaaaaaaatggacttgaatagcctcatcatgctgcagctgaacttttgagcttcagtcactggcattatagttgtggcatacactttaaaggaaaatagatcaccttaaaccatttcactagagcatttaaaatctctgggctatttcgcttagtgcaactgcaaagatcacaaagttggaaaaaagaaaataccatctcatgtgttgtttacatttgggctttggtcccacatgtaatggcaatatctaagtagcacatcgatgggattgtgcttagcattttctcaacttctttttgtctcacttagccccccaaactactaaaccaagtcacctttctcttttataacattgcacttttagtttctccttactcaagccatgttttaagtttaagttgtgcacaatgatagatggaatcataacctatttcactgaattttttgctactattttcatgcatttccatatcttgaagttgaacatccattatgtgttgctaacatatacaaacaatctttcaaaattactcccgtaaaaaaatattgtaatgtatgtcgtatcattccacaaagtgaaatgcatggttcaagtaggtcctaggcgctatagttcagcatggctggcgcctatgctctgccttggtgggggcgtggggcctagcgggcgcctaggtgagaccagctagtcaaatccaagaaattagcaagcatattacataaaaacttagacaatataacactacagtagtaagacaagagcacccaaggtagattagctgcctaatgcaccatccatgcctaactatgacggcaacactggtgaaatgcccttagggaagtaaagtggactttctaatttaaatcttcttctgcaattacataaaatcaatactttatcaggaaaatggtgaaaagacagtttttgatggatggccagtaggcagtagaactaactcgattgctttgtttaattaacactcccaattttgatctgttttgtcaatgatattcacgaatgtaagaaattagaacagcagcttcaaatcagaaaggtgtagactgcacaagacagtactttcaccattatagcctttttttatagcctcttaaaacaatctatgaagttcagtttatttgatgctgttcatctagatggctaaaatgactgcagtggaatagtaacaacagagaaggaaaattatgcttaaaatagatttgtaagcttctcctacagaaattattctctgttggtagggatggggtgcactatagtgcaactaaatgtactaaatacacaatatcaactgaaaaggtacatttcggttgattagtccatggatacccataatggcccatgcccatccctatttgttgtgttgcgttcacaccctggagctcgtgacaccaaacatcaggaaactgccaaatgtgtggacacaaagtagagtatgggtgtgtatagttcacgctaaaattggaagtttggttgaaattggaacgatgtgacggaaaagttggaagtttgtgtgtaggaaagttttgatgtgatggaaaagtttaaagtttgaagaaaaagtttggaactaaactcggcctatatacatattagtgacttactgagaaccgaccgtggagatctatttctgcttgtttatcagaaaagtatggagcagtaaagagtgatctttgtagtattatgaacttattatggctttttggtgcctgtatacttgttttctgttttaaataattataaggttgtgcaaccaaagaagacatttctatttcactgtattatagtttagattcagtcacttgtcaatggcaaaatgtagaattgctcattagtttattgtattatagtcatggaaaaaaacctgccagccggttatcagtggtttgtcatagtaaaattgaaaaccaatcgtagctagaactagcttgtccaggtattaaaggcccaccactttggaaggcttggttgtgtacgtgcgtccgaaaaacagcacacctttatttttacttttgctttttacataaatttattgtagccttattcaaaaattgagatggaaatttcttgactttctttaaaccaagagatatttctttgataatattgactggtggcccaattgttggcaaactgggccttgacttgctgcaaaattctgctctggtttgtgggctttatggcatttgttgcttttgttccttttttcgttacgtggagcttttcttgctaggccttatgtagtcactgcaacagtatgtttttgtttggtactctctccgtttcacaatgtaagttattctacaatttcccacattcatattgatgttaatgaatctagacatatatatctatctagattcattaacatcaatatgaatgtggaaaatactagaatgacttacattgtgaaacggaggaagtactaaatttctgttataatccattcattaactgttcagttttgtttacatccacactcttccttttcaggtcttactattgtatctacatgcaattcaattttatcttgtttaggtaatgattactctgattcatggcaagcaggtattagaggcggtcaacaatccttacggacaaaagaagcgttgcctaagaagaacattgacaggtccctggtaaaatttgagttattgataaccggagcttgacaagacacaccatattttaaccttaaggttcttgtacatattgtcaggatttcaaaactcatctctctgttgtaaattgatgatcaacagagtcgagtgtactagtgcttaacttgccctgtcaccttcaacttacagttctgcaagtcttctatcgtgctcttatgtcc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068553.1 RefSeq:Os08g0472000]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 8]]
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| − | [[Category:Chromosome 8]]
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