Difference between revisions of "Os05g0477600"

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(Created page with "{{JaponicaGene| GeneName = Os05g0477600| Description = Alpha-expansin OsEXPA4| Version = NM_001062377.1 GI:115464484 GeneID:4339106| Length = 1919 bp| Definition = Oryza ...")
 
(Annotated Information)
 
(4 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''Os05g0477600''' was reported as ''' OsEXP4''' in 2003 <ref name="ref1" /> by researchers from the Machigan.
GeneName = Os05g0477600|
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<br>
Description = Alpha-expansin OsEXPA4|
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==Annotated Information==
Version = NM_001062377.1 GI:115464484 GeneID:4339106|
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===Gene Symbol===
Length = 1919 bp|
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*'''Os05g0477600 <=> OsEXP4'''
Definition = Oryza sativa Japonica Group Os05g0477600, complete gene.|
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<br>
Source = Oryza sativa Japonica Group
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===Function===
 +
*The researchers generated transgenic rice plants that express sense and antisense constructs of the expansin gene '''OsEXP4'''.
 +
<br>
 +
===Expression===
 +
*In adult plants with constitutive '''OsEXP4''' expression, 12% of overexpressors were taller and 88% were shorter than the average control plants, and most overexpressors developed at least two additional leaves. Antisense plants were shorter and flowered earlier than the average control plants.
 +
<br>
 +
===Mutant===
 +
*In transgenic plants with inducible '''OsEXP4''' expression, we observed a close correlation between '''OsEXP4''' protein levels and seedling growth. Coleoptile and mesocotyl length increased by up to 31 and 97%, respectively, in overexpressors, whereas in antisense seedlings, they decreased by up to 28 and 43%, respectively.  
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<br>
  
  ORGANISM  Oryza sativa Japonica Group
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==Labs working on this gene==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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*Michigan State University–Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824-1312
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824-1312
            clade; Ehrhartoideae; Oryzeae; Oryza.
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<br>
|
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==References==
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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<references>
AP = Chromosome 5:23542813..23544731|
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<ref name="ref1">
CDS = 23543319..23543622,23544139..23544451,23544546..23544669|
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Regulation of Expansin Gene Expression Affects Growth and Development in Transgenic Rice Plants
GCID = <gbrowseImage1>
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</ref>
name=NC_008398:23542813..23544731
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source=RiceChromosome05
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</references>
preset=GeneLocation
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<br>
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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==Structured Information==
name=NC_008398:23542813..23544731
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]
source=RiceChromosome05
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggcgatcgctggcgttctcttcctcctcttcttggcacggcaagcctccgccgccgggtacggcgggtggcagagcgcccacgccacgttctacggcggcggcgatgcttccggcaccatgggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcggcgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtgcgacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccccgccctcacttcgacatggccgagccggcattcctccacatcgcccagtaccgcgccggcatcgtccccgtctccttccgcagggtgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacgggcactcctacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgtccgctccgtctccatcaaggggtcgcgcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgttcctcgacggccagagcctctccttccaggtcaccgccagcgacggccgcaccgtcaccagcaacaacgtcgcccaccccggctggcagttcggccagaccttcgagggtggccagttctag</cdnaseq>|
 
AA = <aaseq>MAIAGVLFLLFLARQASAAGYGGWQSAHATFYGGGDASGTMGGA                    CGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCP                    PNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVN                    GHSYFNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVT                    ASDGRTVTSNNVAHPGWQFGQTFEGGQF</aaseq>|
 
DNA = <dnaseqindica>1110..1413#281..593#63..186#acactgccaagctccgcttcaagtgagctagtctagccagcgtttagacaccatcaccagcaatggcgatcgctggcgttctcttcctcctcttcttggcacggcaagcctccgccgccgggtacggcgggtggcagagcgcccacgccacgttctacggcggcggcgatgcttccggcaccatgggtgagtagtagaatctcatgcgcagccggcgaatgcagcgtgttgctgtagctcaacggcgagaatgacgatcgaaatggtctttaatttgcaggcggggcttgcggttacggcaacctgtacagccaagggtatggcacgaacaccgcggcgctgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcggtgcgacaacgccgggagttcgtgcctgccgggctccatcaccgtgacggccaccaacttctgcccgcccaactacggcctccccagcgacgacggcggctggtgcaacccgccccgccctcacttcgacatggccgagccggcattcctccacatcgcccagtaccgcgccggcatcgtccccgtctccttccgcaggtcacattctcttcgccttcacagactctcagctggtttctaccgtagtagtagaatcgaacaagtttaaacaaccttgagaaaaaaaaacacgttaaaacttaaaacgtaccaatagtggtcagttatgacttgcgactttagtcctgtactaccgccacgtcctggcacgatcggccggatcaattaaacacgcgacgtcggtcggtttcaactttacgccgggccccacattaggctcggccgcgtgccatgagtgaccattagtttccgctgggaccagcctgcggatttgatacgttgcatgcagataggccgctgctgctgctgcagcagcaactgcgccacgtacagtggctacgcatgtgcatgctgcgtcgtgccattgtcacgtactgcctcacaccgattcggtcgcgggattcacctcaccgcgagatcgagcaagaaagaaaaaaaacatatgtactccagtattaaccgcgcggtctcgtgtgattttcctttttgctgcagggtgccgtgcgtgaagaagggtggggtcaggttcaccgtgaacgggcactcctacttcaacctggtgctggtgaccaacgtggccggcgccggcgacgtccgctccgtctccatcaaggggtcgcgcaccgggtggcagcccatgtcgcggaactggggccagaactggcagagcaacgcgttcctcgacggccagagcctctccttccaggtcaccgccagcgacggccgcaccgtcaccagcaacaacgtcgcccaccccggctggcagttcggccagaccttcgagggtggccagttctagccgccaccgacatcgccgtctccgacacccacatataatagcacggtgtccttcttcgtcttcgttctcgtcgtcgtctttcttccttgagagattatttattttgagcaagagagaaagaaaagcctcttcgttatagtggagaagaggttttgggctatgctgaggctgctaattagcacccgcttagacgttttccttctctggacttcgtccaataatgactggaccggtccaccatcatcaagtgtagtggtagtagtaaaggggagtactaagcttagtactacttgaagaaaaaatcaataataattgtattgattaaatttctacttttgagcgttttcttgtaccggagtgatggccttgcaacggaattaaaaaccgcgaggccgtgttttatttatcaaggggactattgatgttgtactttgtcgtagctagcggctgtagcttctctgttcctgtattgtttgggtgtaatggaggagtaatcaattaaggtg</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062377.1 RefSeq:Os05g0477600]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 5]]
 
[[Category:Chromosome 5]]
 

Latest revision as of 06:00, 14 December 2016

The rice Os05g0477600 was reported as OsEXP4 in 2003 [1] by researchers from the Machigan.

Annotated Information

Gene Symbol

  • Os05g0477600 <=> OsEXP4


Function

  • The researchers generated transgenic rice plants that express sense and antisense constructs of the expansin gene OsEXP4.


Expression

  • In adult plants with constitutive OsEXP4 expression, 12% of overexpressors were taller and 88% were shorter than the average control plants, and most overexpressors developed at least two additional leaves. Antisense plants were shorter and flowered earlier than the average control plants.


Mutant

  • In transgenic plants with inducible OsEXP4 expression, we observed a close correlation between OsEXP4 protein levels and seedling growth. Coleoptile and mesocotyl length increased by up to 31 and 97%, respectively, in overexpressors, whereas in antisense seedlings, they decreased by up to 28 and 43%, respectively.


Labs working on this gene

  • Michigan State University–Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824-1312
  • Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824-1312


References

  1. Regulation of Expansin Gene Expression Affects Growth and Development in Transgenic Rice Plants


Structured Information