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| − | Please input one-sentence summary here.
| + | The rice '''''Os09g0489500''''' was reported as '''''OsbZIP74''''' in 2008 <ref name="ref1" /> by researchers from India. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os09g0489500''''' '''<=>''' '''''OsbZIP74,OsbZIP, bZIP74''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * The basic leucine (Leu) zipper (bZIP) proteins compose a family of transcriptional regulators present exclusively in eukaryotes. |
| | + | * The '''''OsbZIP''''' proteins characteristically harbor a bZIP domain composed of two structural features: a DNA-binding basic region and the Leu zipper dimerization region. |
| | + | * bZIP proteins have been shown to regulate diverse plant-specific phenomena, including seed maturation and germination, floral induction and development, and photomorphogenesis, and are also involved in stress and hormone signaling. |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * The researchers from India find specific or coexpression patterns of rice bZIP transcription factors starting from floral transition to various stages of panicle and seed development. |
| | + | * bZIP transcription factor-encoding genes in rice also displayed differential expression patterns in rice seedlings in response to abiotic stress and light irradiation. |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| + | * The phylogenetic relationship among rice bZIP domains as well as with bZIP domains from other plant bZIP factors suggests that homologous bZIP domains exist in plants. |
| − | | + | * Similar intron/exon structural patterns were observed in the basic and hinge regions of their bZIP domains. |
| − | You can also add sub-section(s) at will. | + | * Detailed sequence analysis has been done to identify additional conserved motifs outside the bZIP domain and to predict their DNA-binding site specificity as well as dimerization properties, which has helped classify them into different groups and subfamilies, respectively. |
| | + | <br> |
| | + | '''''You can also add sub-section(s) at will.''''' |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Nijhawan A, Jain M, Tyagi AK, Khurana JP. Genomic survey and gene expression |
| | + | analysis of the basic leucine zipper transcription factor family in rice. Plant |
| | + | Physiol. 2008 Feb;146(2):333-50. PubMed PMID: 18065552; PubMed Central PMCID: |
| | + | PMC2245831. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]] |
| − | GeneName = Os09g0489500|
| |
| − | Description = Similar to Transcription factor HBP-1b(C38) (Fragment)|
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| − | Version = NM_001070069.1 GI:115479880 GeneID:4347436|
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| − | Length = 9095 bp|
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| − | Definition = Oryza sativa Japonica Group Os09g0489500, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
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| − | AP = Chromosome 9:19522191..19531285|
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| − | CDS = 19522511..19522705,19524749..19524988,19526453..19526839,19526963..19527040,19527252..19527311<br>,19527469..19527513,19527676..19527888,19528037..19528089,19529356..19529462<br>,19530588..19530775|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008402:19522191..19531285
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| − | source=RiceChromosome09
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008402:19522191..19531285
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| − | source=RiceChromosome09
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| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atgatgagcgggagcgagagccagcaggagagggagcatcgtcagcagcaggagatgaacatctcctttgggatgatgatgaaccatggccaccatcactacggacagcatcagcagcagcaccatcatcatccgcctccgtcatcgtcttcctcttcctccatgcatgccgctgccgcaagcttcatcaaggaggcatctgcaggagcttatgatcatctgggggagctggaccaggccttgttcatgtacctggatcatggcagccatgcggcgtcgcaccaagaacaaaggcagaccctcaacatcttcccttcccagcccatgcatgtggagccatcacccaagggagagattagtttagtgctgtccccagcagctgtgggaaccaagatggcgaggtcacctgatcatcaccaccaccatcagcagcaagcagcagcagccatggaggagttggcgacagggagcaggagacaggatcaccaccacctgcagcaccaacctttcgctgctgagcctgcagggatcaacagggatgtgaagccggtgacagccaagaaggatcacaggaggggtgtatctactggtgaacgcgacccaaagacgctgaggaggctagcccagaacagggaggcagcaaggaaaagcaggctaaggaagaaggcttacatccagcagctggagtccagcaggatcaggcttgctcagctcgaacaggaactgcacaccgcgagagcccagggggtgttcttccccggcagcggcgggctgatcggcgagggaggcagcgggaagggggtcctgctgggcgggatcgatggcgtcggcggcggcggcggcggggggctgagctcggaggcggcgatgttcgacgtggagtacgggaggtggcaggaggagcaccaccggctgatgtacgagctgcgggcggcgctgcagcagcagctgccggagggggagctgcaggtgtacgtggagagctgcctggcgcaccacgacgaggtcgccgccatcaaggacggcgccatcaggggcgacgtcttccacctcatctccggcgtctggatgagcccagccgagcgctgcttcctctggctcggcggcttccgcccctccgaggtcatcaagatgctggtggcgcacgtggagccgctgacggagcagcagatcgtgggggtgtacgggctgcagcagtcggcgctggagacggaggaggcgctgacgcagggcctcgacgcgctctaccagtcgctctccgacaccgtcgtctccgacgccctcagctgcccttccaacgtcgccaactacatgggccagatggccgtcgccatcaacaagctctccaccctcgagggcttcgtccgccaggctgagaacctgaggcagcagacgctgcaccggctgcagcaggtgctgacgacgaggcagatggcgcggtcgctgctcgccgtctccgactacttccaccgcctccgcaccctcagctccctctgggtcacccgccccaggcacccgcctcacgaccaccagccgccgccgcactccgccgccccccacacctga</cdnaseq>|
| |
| − | AA = <aaseq>MMSGSESQQEREHRQQQEMNISFGMMMNHGHHHYGQHQQQHHHH PPPSSSSSSSMHAAAASFIKEASAGAYDHLGELDQALFMYLDHGSHAASHQEQRQTLN IFPSQPMHVEPSPKGEISLVLSPAAVGTKMARSPDHHHHHQQQAAAAMEELATGSRRQ DHHHLQHQPFAAEPAGINRDVKPVTAKKDHRRGVSTGERDPKTLRRLAQNREAARKSR LRKKAYIQQLESSRIRLAQLEQELHTARAQGVFFPGSGGLIGEGGSGKGVLLGGIDGV GGGGGGGLSSEAAMFDVEYGRWQEEHHRLMYELRAALQQQLPEGELQVYVESCLAHHD EVAAIKDGAIRGDVFHLISGVWMSPAERCFLWLGGFRPSEVIKMLVAHVEPLTEQQIV GVYGLQQSALETEEALTQGLDALYQSLSDTVVSDALSCPSNVANYMGQMAVAINKLST LEGFVRQAENLRQQTLHRLQQVLTTRQMARSLLAVSDYFHRLRTLSSLWVTRPRHPPH DHQPPPHSAAPHT</aaseq>|
| |
| − | DNA = <dnaseqindica>8581..8775#6298..6537#4447..4833#4246..4323#3975..4034#3773..3817#3398..3610#3197..3249#1824..1930#511..698#gatgcagagggagcatggagccaaacagaaagtctgtttcgccattaatggctctcccactcacctctctctctagaaacacatagccaagatcatcatcatcagcaaccatattagtgaattaagaggaaatcaaagcagtagcagcccaggaacagcatcatcaaagcagtaagagagggtagtttgcaagtggtgctagtgtccaaggcgccatcacgaactagagtcctagatagagctagaggtcatgcatggggtagttgctggtgtggaagaggaagagagaaagtgagtgagagagagagaggtggcgccttggctgctagcctcatagagtcaaagagtatttaggaccttgcagctatggctatagatagatagaggcacatacgcatacgtatatagcttgctaccttgccttctctgtgtatgtttcggcgtgtgttcttcttcttctcttcttcctcctctcgattctgaagaggttagctttgatttgatcgatcgatgatgagcgggagcgagagccagcaggagagggagcatcgtcagcagcaggagatgaacatctcctttgggatgatgatgaaccatggccaccatcactacggacagcatcagcagcagcaccatcatcatccgcctccgtcatcgtcttcctcttcctccatgcatgccgctgccgcaagcttcatgtacggctttgtttactgaatctctctccctctctctctctctctctgatttgtttgatgcatatatatgtgtgtctctttcttgttcttgatttgggccgtgtcttggagtttgattttgatctctgatttgttagtcatgatcatgcatggtttgttttggtttggttcttttttcttgcttgctctctttgtttctgctggttcttctgatctcttttttgccatggtttcctcttcttcttctccttcttctttttatggaaactgctttaatttcctcttctcctcctcctcctcttttaacaaaacactagccatggagaaactaggttaccaataatcttcttgtggactgaattttgcattctactgttctacatgttgaagattttgcttctttttttgctagaattttgcattttacatgcagacgattttgcctttttgcttcctggttgggaattcagtgattgtttgagcggatgcaaacagatcggtccttttctcttccttcttcctctccccccaagaaaaaaaaagttagacgatgatcaaacaagttcagatttaaaaattcagtacttgtgatttaatatctggagccagatatagttgaattgttgcaacaactcgctagtctttctttcaaattttgggaggtcagcgattcatttccgcataagtacaagagcattacctaagacatatttatgaccaactgatcatacatatctgcccaagtttttacatttaatttacagtgagcatgacttgcacacatgaaatttggagagtacatggccatgcttattttctgggctgtgccaaaataaatgctacaaaggtagagtagattcatattattcttctgctcctactcttgcagtcttgcagaggttggaccagacaaataattaatatagcatcatacataattggcttatagaagcatgatttcatgatgatgtgtgatgccttcactacttcctcaaccttgtgcatgcatgctactatactacctgcatctatctcacacatacatatagctatacctcatcaccaacaattttgcttcttgtgctgctcctaattttgcttcttgtgttgcaccaccaggagcagcaaggaggcatctgcaggagcttatgatcatctgggggagctggaccaggccttgttcatgtacctggatcatggcagccatgcggcgtcgcaccaagaacaaaggcgtacgtatacgaaaaaaacccgtaaattttaattcgccaaccgaaaaatcaccacaaattttctcaaacatgcattcaccatatatatttccttgcaaaaagttcagattttttttttcaaagagtattaatgcaggtgatgagatcagtagtaacagttttcagttgttcttcttttggcatttagcattagtagtaataatagcataataacagcagtatatatagcttaggcacagaaacaaatgtgccaagcatacacagggagtagcagtaggctgtagtataggaggaggagggatatattcctatggttgcagaaagttgcatcctttttctggggtcatcagaaacgatcatggtatacggccggccggcctgcatgcagcagattctcaggtactccattttgaccaggatatctgctagctgcaacaaatctctgcagtactactactgctactactaccactgcactcctgtggagatcacacatctcaggaccagggaatcagcaacccaaagtccatgcatatgaaaccaacaatctctctagctatacctctctcttccctctctctctctctctctatctctgactgctaagatctggccggctggtttggactgtgacatgtaacaaactgctcaatgatttcgccgagatcgagctgcatctgcatgtggcctggtgcagagaaagagggacgtacacacacacgccgaagagatgatcgatcaatccccatgctactgatcgttcttgttgctgctactagctaggagtagtagcaagatgtgcacatttgttcgagtttgacccgatcgatgctatccacttctgttgtttccagcttcaggttacagtgatcagtgttgcagtgtagcagcagctagctgtgcagctgtgtgatatctgtccttggctcccgtatctctcgtagcccccagctttctcgtgttgcctgtgtgcctgcagtactgcagctatagctagctttggacgtacctagcatgcatatatagtacacactactctctgccatgcaaagcatgatgaatttgagcagcagcagcagtagcacagtagtgtcttgttccagctgcatgcctgcatatatacagcctagctctcttcttcagtagagttttcagtagcaattcgatcagtttgtgagttgtggtgtgtgagtctccagggttagctggtcttctgcttttgctcgatcgatctcttgatttgtgttgtgctcatggatgatgcagagaccctcaacatcttcccttcccagcccatgcatgtggagccatcacccaaggtatttaattaattttacttactttcatctgaatctcacattggttatgtcatttgtcttttcaatgtagcactcgtgtgtagtatatatgaaatcaaagattggtttaatgtttgtggatgtgatgattgattgattgatttggcagggagagattagtttagtgctgtccccagcagctgtgggaaccaagatggcgaggtcacctgatcatcaccaccaccatcagcagcaagcagcagcagccatggaggagttggcgacagggagcaggagacaggatcaccaccacctgcagcaccaacctttcgctgctgagcctgcagggatcaacagggatgtgaagccggtgacagccaaggtcagcatcatcacttaaccacttaattaaccaactaatatctaaccctgctagctaaagaaaacaccctgattaatctattcagaacactgtccttgattgtttttatgttttagcttacattaatgtgcatattgtttatgtttttttttattattgcagaaggatcacaggaggggtgtatctactggtgaacgcgacccaaaggtactatactagtgatattctcaagaaataattagagattagttgttgttctctttttgtgcatatcagttgagttaaggacaatactaaaaatgatttggtctgatcatgcttacttttttgcgtatcattttgtgattaatgtaaatatatgcagacgctgaggaggctagcccagaacagggaggcagcaaggaaaagcaggctaaggaagaaggtgagtgaagcaaaattaaacagtaattaaacacagaaagaaaaagaagaaaatgacaggctatatatattcaatatattcagaacaaaagcaatcacccaaatttgatcaaattaaaccaaattaattttgctagttaattactaccactcttcttcaattcagccactgtggattaattactttactgaaattttgactgaaacgacaggcttacatccagcagctggagtccagcaggatcaggcttgctcagctcgaacaggaactgcacaccgcgagagcccaggtaggcgaatttcataatttcaaattcgagcaaaattcaaactgcacccaaatcaaatcaaacacaaccaattcggattatgtattatggatgaaaatgtgtacggatctatacatggtgcagggggtgttcttccccggcagcggcgggctgatcggcgagggaggcagcgggaagggggtcctgctgggcgggatcgatggcgtcggcggcggcggcggcggggggctgagctcggaggcggcgatgttcgacgtggagtacgggaggtggcaggaggagcaccaccggctgatgtacgagctgcgggcggcgctgcagcagcagctgccggagggggagctgcaggtgtacgtggagagctgcctggcgcaccacgacgaggtcgccgccatcaaggacggcgccatcaggggcgacgtcttccacctcatctccggcgtctggatgagcccagccgagcgctgcttcctctggctcggcggcttccgcccctccgaggtcatcaaggtacgctactatgcactccccccgccatggattggcttggattggattaaccctaaccctagatgctcgtagcgattgacaatggcttcgtcgggaggtagaagacaaacggaacaaagtggggaaaaaataatttggattatgctttgaaacccctcgaatatttttatattgcgtattagtccctcaaaagaaaataaaagaatttacataaacaaccttaactagctcgggtcttcagagtgatgaagaaaaatgtcgcatgaaaaaagtttgcgcatttctaattttgatcaacatgaaaaaagtaacttatcgaaaacaatttcgataagaaaattgaaaatatataatacttagcctcactatataaaaaatgatttctattgatgccccctccgactgcattgacaatccataagggtcgtgtcattgatcgcatacgaaaacgtagtttcatatatggctgacttaaggtggccgcacacgtggttgagttaagccaactgcttgtggaatgtgataattttctacatgtgaaaattttcattggccttctgttaggggggcgattccgtcttttgcaaatgcatcctagccgtctgtaaaggaaaatgtctttttttttaaaaaaaaaaacaatgtcgatagtaaaccctattttagtttagtacttgtttataatacgaaacggagagagtattagcagcattggcaccttaattatatgggtcgcggaggcagtgaataatattcatgtgacaaaagccaaaacacacaccttgttattgtcgtttccagcaatgggtaggagaagttgtgcacttgctcggcaagctcatcataccctctccctccatggagagagctggacgacgacaacgagtagtggatggatagctagcttcatcgatctgtcgcgctcgcgcgcgtgcgagcattccccgccatcttcgcgaccgcgtgggcgcatgcgtcgatcgaatcgatcgatatatcgacgcattgaatgatcgatctgatcataatcagatcaggaaactgggatttcagcttttcaagccgggccacaactgaatccaaccaaatgttgtagaactgtacgtacgtacgtagcagtactgataaaccaacaaaaaccattacggattcaggatttacctacattcgtttcgaatctgttacgattaattgtgctgggtttttcagtgtaattaaactgctccatcgatcgcgtatactgaactgttatatcagctgctatcacagtacctgcattgacatatactataactcctgaatgaatatctgaatatctgatcactagctgacagagcaacagtttgtgtgcatttgttctcttcttttttgctcgattgcatgactgaattcgtgatgtgattaatgtgattggattgattaataagtagtaattgtgatcaatgtggattggaggggatgcagatgctggtggcgcacgtggagccgctgacggagcagcagatcgtgggggtgtacgggctgcagcagtcggcgctggagacggaggaggcgctgacgcagggcctcgacgcgctctaccagtcgctctccgacaccgtcgtctccgacgccctcagctgcccttccaacgtcgccaactacatgggccagatggccgtcgccatcaacaagctctccaccctcgagggcttcgtccgccaggtaccctaccttgcgtgattctcacacactgtctgcatcttcttctctcatgatttgatcgagctcagtaaccaaaccataccaaattaccaacccttcttgcaatcagttcagtcatgcattgcatgcactcttcatcatcagttagttggtttctcttcagttccatcagttgtaggcccatttgtacttcctcctcttacagattaattactccctccgtcctataatataatggattttaagtttttgcttgcaacgtttgaccactcgtcttattcaaatttttttggaattattatttattttatttgtgacttactttattatctacagtactttaagcacaacttttcgttttttatatttgcaaaaaaaatttgaataagacgagtggtcaaacgttgcaaacaaaaactcaaaatcccttatattgtgggacggagggagtattgattatcgcactacactttccaagctgctgaacaatacgatttttttttcaagaaattatatatagattgcctagaatttttttttaataaaagccacattttaactttataatagttaattcattcgtttgtacgtcgagtatctcaagaatagtcagataatataccatctgttcatttaattattcggaacaataaaactgggttgtactacatgtttatgactttattatagtttatttgttagttaatctcctgtcacttcgatggattagttagagctggagccaatgggagaagatcacatatatttgttagtagttgagaaggttcaatggatagttcacctaattgaaatcgacactgcaatactgaatatgttcatgattaaattagataattgctgtcgcctagctaggtgttgtgtcgatcgatcgacagagaagcatatgtggattaggtttttcagcttttgaaaagcacccgactgtctccatcccagaaacgggagagagcagaggttggatttgatataaaaaccctgaaaaggctgtgtaacaaacaccacaaacatgtataatttatgagggtttattgcttgactaattgttagtttgttcatcggtctttccatgttgggtagatgtgcctggctgctcggtttttataggccgcccttcacctgctcatggatgccacaaacagatcgaccacacatttcatttcatatcacactttgcaacttgcttaattggttactgtttgtgcttagtataattaatcagccaactaattaatgatgtccacgtatgtgtaaagtaatattcctacaatgcgtgtaactagttgttgctttttttttacaattaaaatatataggaggataacttcttatatccatttgagatgcaagtatgaattaatatatgttttgtttttgaaaatagaaatgatttagttccagcctatagtctcttatcgtctatttgttttcttatcatccgcgtctaaaatataatcttagagttgaatttgcaaaactatcattcgagtggcatccttttaaaattagaaaaaaccagtgacaaatttacaaacgtccaatatttatttttacttttatatcgtggattgcacgaatatataatagttttaccatatataactccaactccactccaaagtcttcaactaactgtgcttctggatgattagctgctgattttggcatgacggtggcaaagcatcagacattccgacaagctaagagcaaggctaataagacaaccagttatttagttgtttactgtatagatctttatggtctatatctcagcttacttataaagtggttagctcttcactatagatatatagtccacctgtctgtctcatagatttttttagttttttttgcctaagtcggctgtaagcttacagtcccgtttctcatctctctctctcctttcctctctcatctatctcagcattcagtcttcttatagcgctctattatacttactctaaatagctcgtgcatgattagtagatttaattctaatgtaattaattaactggatatatgcaggctgagaacctgaggcagcagacgctgcaccggctgcagcaggtgctgacgacgaggcagatggcgcggtcgctgctcgccgtctccgactacttccaccgcctccgcaccctcagctccctctgggtcacccgccccaggcacccgcctcacgaccaccagccgccgccgcactccgccgccccccacacctgagatcaccgccgccggcaacgcatgcaaacaccgtagctcttagctagcagcttagagatatcgagagatcagaaattaagcgatcgatcgagagaggacgacgactgtgaaaccccccatggaatggatggatggatggatggatgaaccgatgtgtactgtgtttgggcattaaccctttgatgtaaacaaagtaggcgtgtttgactgcttggtcgatcgatcgagatctctgtcgataggatcttgaattagcggatcttacctcagcagctggttcatcaagtgttgatgcagctcaatcaaactttttcctgatg</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070069.1 RefSeq:Os09g0489500]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 9]]
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| − | [[Category:Chromosome 9]]
| |
