Difference between revisions of "Os05g0551700"

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(Created page with "{{JaponicaGene| GeneName = Os05g0551700| Description = contains InterPro domain(s): IPR002627, IPR011593| Version = NM_001062785.2 GI:297604871 GeneID:4339535| Length = 17...")
 
 
(3 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''''Os05g0551700''''' was reported as '''''OsIPT7''''' in 2006 <ref name="ref1" /> by researchers from Japan.  
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GeneName = Os05g0551700|
 
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Description = contains InterPro domain(s): IPR002627, IPR011593|
 
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Version = NM_001062785.2 GI:297604871 GeneID:4339535|
 
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Length = 1769 bp|
 
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Definition = Oryza sativa Japonica Group Os05g0551700, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os05g0551700''''' '''''<=>''''' '''''OsIPT7''''','''''IPT7'''''
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
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Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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* Some phytohormones such as gibberellins (GAs) and cytokinins (CKs) are potential targets of the KNOTTED1-like homeobox (KNOX) protein.
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AP = Chromosome 5:27504608..27506376|
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* The rice (Oryza sativa) genes for adenosine phosphate isopentenyltransferase (IPT), can catalyze the rate-limiting step of CK biosynthesis.
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CDS = 27504971..27506053|
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* KNOX protein simultaneously decreases GA biosynthesis and increases de novo CK biosynthesis through the induction of OsIPT2 and OsIPT3 expression, and the resulting high-CK and low-GA condition is required for formation and maintenance of the meristem.
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GCID = <gbrowseImage1>
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name=NC_008398:27504608..27506376
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===Phenotypic analysis===
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source=RiceChromosome05
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* Phenotypes of '''''OsIPT''''' overexpressers resembled those of KNOX-overproducing transgenic rice, although '''''OsIPT''''' overexpressers did not form roots or ectopic meristems, both of which are observed in KNOX overproducers.
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preset=GeneLocation
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</gbrowseImage1>|
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You can also add sub-section(s) at will.
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GSID = <gbrowseImage2>
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name=NC_008398:27504608..27506376
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==Labs working on this gene==
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source=RiceChromosome05
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* Field Production Science Center, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishi-Tokyo, Tokyo 188–0002, Japan (T.S.);
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preset=GeneLocation
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* Institute of Physical and Chemical Research Plant Science Center, Yokohama, Kanagawa 230–0045, Japan (H.S., M.K.); 
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</gbrowseImage2>|
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* Graduate School of Bioagricultural Sciences (H.N., Y.I., Y.S.)
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CDNA = <cdnaseq>atgaccagcgttgccaccaggattgccacgctcgtgcgggccgcggcggcggcgagccggccattgcggctccaccgccggcccggcggcgaggatacgaggatggtggtgatcgtcggcgccacgggcaccgggaagaccaagctgtccatcgacgccgccaaggtgatcggcggcgaggttgtcaacgccgacaagattcagctctatgacggcctcgacgtgaccaccaacaaggtgagcctcgccgaccgccgtggcgtgccgcaccacctcctcggagccatccgccccgaggccggcgagctcccgccgtcgtccttccggtccctcgccgccgccacggccgcgtcgatcgcggcgaggcggctcgtgccggtcatcgccggtgggtcgaactccctcatccacgccctcctcgccgaccacttcgacgcctccgctggcgatcccttctcccccgccgccgccttccgccactaccgcccggcgctccggttcccgtgctgcctgctctgggtccacgtcgatgaggcgctcctcgacgagtacctcgaccgccgcgtggacgacatggtggacgctggcatggtcgaggagctccgggagtacttcgccacgacaaccgccgcggagcgcgccgcgcactccgggctgggcaaggccatcggcgtccccgagctcggcgactacttcgccgggcgcaagaccttctccgaggcgatcgacgacatcaaagccaacacccgcgtcctcgccgccgcgcaggtgtccaagatccgccgcatgtccgacgcctggggctggcccatccaccgcctcgacgcctccgacacagtccgcgccaggctcacgcgggcgggctccgccgccgagtccgcctcctgggagcgcgacgtgcgcggcccaggcctcgccaccatccgcagcttcctcgccgatcagtcaccgccaccgcgcagcgagggcaccaacgactacctgtacgccatggagacggaaccagagccgccgccgccgccgacgttgccgccgcggctgctccggttgccgcggatgcagtactgcgacatggtggggtga</cdnaseq>|
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* Bioscience and Biotechnology Center (Y.Y., M.M.), Nagoya University, Nagoya, Aichi 464–8601, Japan
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AA = <aaseq>MTSVATRIATLVRAAAAASRPLRLHRRPGGEDTRMVVIVGATGT                    GKTKLSIDAAKVIGGEVVNADKIQLYDGLDVTTNKVSLADRRGVPHHLLGAIRPEAGE                    LPPSSFRSLAAATAASIAARRLVPVIAGGSNSLIHALLADHFDASAGDPFSPAAAFRH                    YRPALRFPCCLLWVHVDEALLDEYLDRRVDDMVDAGMVEELREYFATTTAAERAAHSG                    LGKAIGVPELGDYFAGRKTFSEAIDDIKANTRVLAAAQVSKIRRMSDAWGWPIHRLDA                    SDTVRARLTRAGSAAESASWERDVRGPGLATIRSFLADQSPPPRSEGTNDYLYAMETE                    PEPPPPPTLPPRLLRLPRMQYCDMVG</aaseq>|
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DNA = <dnaseqindica>324..1406#agtctcctcggctgctactactactgcgttgtgcgcacaatgccaagcgacccactactgccctgcgtctgcgtgtgccgcgtatacgcacaagccaaagagaatttttaggcgggtagaaacaaaaatcagacccagtttcgcgcaaaaaaaaaaacaaagagaagcccgggggtaagagagagagagagaatttgggagatgtgagacggaagcaacaagcacatgagcgttttgtgattaggaacggacaaaacaaggtcataaggcggcctaatcaggattggaggagaggtctagtctccctttctagtttcccctacatgaccagcgttgccaccaggattgccacgctcgtgcgggccgcggcggcggcgagccggccattgcggctccaccgccggcccggcggcgaggatacgaggatggtggtgatcgtcggcgccacgggcaccgggaagaccaagctgtccatcgacgccgccaaggtgatcggcggcgaggttgtcaacgccgacaagattcagctctatgacggcctcgacgtgaccaccaacaaggtgagcctcgccgaccgccgtggcgtgccgcaccacctcctcggagccatccgccccgaggccggcgagctcccgccgtcgtccttccggtccctcgccgccgccacggccgcgtcgatcgcggcgaggcggctcgtgccggtcatcgccggtgggtcgaactccctcatccacgccctcctcgccgaccacttcgacgcctccgctggcgatcccttctcccccgccgccgccttccgccactaccgcccggcgctccggttcccgtgctgcctgctctgggtccacgtcgatgaggcgctcctcgacgagtacctcgaccgccgcgtggacgacatggtggacgctggcatggtcgaggagctccgggagtacttcgccacgacaaccgccgcggagcgcgccgcgcactccgggctgggcaaggccatcggcgtccccgagctcggcgactacttcgccgggcgcaagaccttctccgaggcgatcgacgacatcaaagccaacacccgcgtcctcgccgccgcgcaggtgtccaagatccgccgcatgtccgacgcctggggctggcccatccaccgcctcgacgcctccgacacagtccgcgccaggctcacgcgggcgggctccgccgccgagtccgcctcctgggagcgcgacgtgcgcggcccaggcctcgccaccatccgcagcttcctcgccgatcagtcaccgccaccgcgcagcgagggcaccaacgactacctgtacgccatggagacggaaccagagccgccgccgccgccgacgttgccgccgcggctgctccggttgccgcggatgcagtactgcgacatggtggggtgagctcgccgccgccgccgccgccgcacggcgccgcagtcacttcattgaaggcttttgggggttcgagggtttaggccgccaattttccagtgtcccggcggcgcccttctctgacactgctcggtgggcccagaaaaagtagccagtgacatagaaagaagagacaaaggtaattaacgtagagagagagaagctaagctatgcaactgatgagaagtgttcttcttcattgcagcagaatttgtgtactctttcttggagaggtggtgattcatcacatcgctctcctcctaaccgcggcactgtatgtatgtagtgagtagtactaatcatctaattatccaccgtgttcagaattttgag</dnaseqindica>|
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==References==
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062785.2 RefSeq:Os05g0551700]|
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<references>
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}}
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* <ref name="ref1">
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[[Category:Genes]]
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Sakamoto T, Sakakibara H, Kojima M, Yamamoto Y, Nagasaki H, Inukai Y, Sato Y,
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[[Category:Japonica mRNA]]
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Matsuoka M. Ectopic expression of KNOTTED1-like homeobox protein induces
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[[Category:Oryza Sativa Japonica Group]]
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expression of cytokinin biosynthesis genes in rice. Plant Physiol. 2006
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[[Category:Japonica Genes]]
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Sep;142(1):54-62. PubMed PMID: 16861569; PubMed Central PMCID: PMC1557621.
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[[Category:Japonica Chromosome 5]]
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[[Category:Chromosome 5]]
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</ref>
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</references>
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==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]

Latest revision as of 11:03, 2 March 2017

The rice Os05g0551700 was reported as OsIPT7 in 2006 [1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os05g0551700 <=> OsIPT7,IPT7

Function

  • Some phytohormones such as gibberellins (GAs) and cytokinins (CKs) are potential targets of the KNOTTED1-like homeobox (KNOX) protein.
  • The rice (Oryza sativa) genes for adenosine phosphate isopentenyltransferase (IPT), can catalyze the rate-limiting step of CK biosynthesis.
  • KNOX protein simultaneously decreases GA biosynthesis and increases de novo CK biosynthesis through the induction of OsIPT2 and OsIPT3 expression, and the resulting high-CK and low-GA condition is required for formation and maintenance of the meristem.

Phenotypic analysis

  • Phenotypes of OsIPT overexpressers resembled those of KNOX-overproducing transgenic rice, although OsIPT overexpressers did not form roots or ectopic meristems, both of which are observed in KNOX overproducers.

You can also add sub-section(s) at will.

Labs working on this gene

  • Field Production Science Center, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishi-Tokyo, Tokyo 188–0002, Japan (T.S.);
  • Institute of Physical and Chemical Research Plant Science Center, Yokohama, Kanagawa 230–0045, Japan (H.S., M.K.);
  • Graduate School of Bioagricultural Sciences (H.N., Y.I., Y.S.)
  • Bioscience and Biotechnology Center (Y.Y., M.M.), Nagoya University, Nagoya, Aichi 464–8601, Japan

References

  1. ↑ Sakamoto T, Sakakibara H, Kojima M, Yamamoto Y, Nagasaki H, Inukai Y, Sato Y, Matsuoka M. Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice. Plant Physiol. 2006 Sep;142(1):54-62. PubMed PMID: 16861569; PubMed Central PMCID: PMC1557621.

Structured Information