Difference between revisions of "Os09g0558000"

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(Created page with "{{JaponicaGene| GeneName = Os09g0558000| Description = Similar to Protein phosphatase type-2C| Version = NM_001070443.1 GI:115480628 GeneID:4347831| Length = 4512 bp| Def...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os09g0558000''''' was reported as '''''OsPP2C70''''' in 2008 <ref name="ref1" /> by researchers from China.
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GeneName = Os09g0558000|
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==Annotated Information==
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Description = Similar to Protein phosphatase type-2C|
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===Gene Symbol===
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Version = NM_001070443.1 GI:115480628 GeneID:4347831|
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*'''''Os09g0558000''''' '''''<=>''''' '''''OsPP2C70'''''
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Length = 4512 bp|
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===Function===
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Definition = Oryza sativa Japonica Group Os09g0558000, complete gene.|
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* The protein phosphatase 2Cs (PP2Cs) from various organisms have been implicated to act as negative modulators of protein kinase pathways involved in diverse environmental stress responses and developmental processes.<ref name="ref1" />
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Source = Oryza sativa Japonica Group
+
* Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis.<ref name="ref1" /> <ref name="ref2" />
 +
===Expression===
 +
* The expression analyses from the researchers provide evidences that PP2C genes in different subfamilies might play different functional roles in distinct signaling pathways.<ref name="ref1" />
 +
===Knowledge extension===
 +
* The reversible phosphorylation of proteins is a fundamental mechanism by which living organisms modulate cellular processes including cell cycle events, growth factor responses, hormone and environmental stimuli responses, metabolic control, and developmental processes.<ref name="ref1" />
 +
You can also add sub-section(s) at will.
 +
==Labs working on this gene==
 +
* State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, PR China
 +
* Biology Department, Millersville University of Pennsylvania, 288 Roddy Hall, 50 E Frederick St, PO Box 1002, Millersville PA, 17551-0302, USA
 +
* Department of Chemistry, Fudan University, 220 Handan Road, Shanghai 200433, PR China
 +
* Institutes of Biomedical Sciences, Fudan University, 130 Dongan Road, Shanghai 200032, PR China
 +
* Centre for Forest Biology & Department of Biology, University of Victoria, Victoria BC, V8W 3N5, Canada
 +
==References==
 +
<references>
 +
* <ref name="ref1">
 +
Xue T, Wang D, Zhang S, Ehlting J, Ni F, Jakab S, Zheng C, Zhong Y.
 +
Genome-wide and expression analysis of protein phosphatase 2C in rice and
 +
Arabidopsis. BMC Genomics. 2008 Nov 20;9:550. doi: 10.1186/1471-2164-9-550.
 +
PubMed PMID: 19021904; PubMed Central PMCID: PMC2612031.
 +
</ref>
 +
* <ref name="ref2">
 +
Umezawa T, Sugiyama N, Mizoguchi M, Hayashi S, Myouga F, Yamaguchi-Shinozaki
 +
K, Ishihama Y, Hirayama T, Shinozaki K. Type 2C protein phosphatases directly
 +
regulate abscisic acid-activated protein kinases in Arabidopsis. Proc Natl Acad
 +
Sci U S A. 2009 Oct 13;106(41):17588-93. doi: 10.1073/pnas.0907095106. Epub 2009
 +
Sep 29. PubMed PMID: 19805022; PubMed Central PMCID: PMC2754379.
 +
</ref>
 +
</references>
  
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  ORGANISM  Oryza sativa Japonica Group
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==Structured Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
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            clade; Ehrhartoideae; Oryzeae; Oryza.
 
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|
 
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Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
 
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AP = Chromosome 9:23005378..23009889|
 
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CDS = 23005643..23005649,23005733..23005908,23006027..23006081,23006583..23006635,23006718..23006794<br>,23006877..23007000,23007085..23007210,23007896..23008046,23008147..23008255<br>,23008826..23008889,23009369..23009485|
 
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GCID = <gbrowseImage1>
 
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name=NC_008402:23005378..23009889
 
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source=RiceChromosome09
 
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preset=GeneLocation
 
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</gbrowseImage1>|
 
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GSID = <gbrowseImage2>
 
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name=NC_008402:23005378..23009889
 
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source=RiceChromosome09
 
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preset=GeneLocation
 
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</gbrowseImage2>|
 
−
CDNA = <cdnaseq>atgggggtgtacctgagcacgcccaagacggagaagtactccggcgagggcgggaacgaccgcctccgctacggcctcgcatccatgcagggatggcggacgaccatggaggacgcgcacactgccctgccacgcctggacgaatgcacatccttttttggtgtctatgatggccatggagggaaggcagtatctaagttttgtgcgaaacatctacacttgcaagtactgaaaaatgaggcttattcatctggtgatttggctacttctgtcttaaagtcatttttcagaatggatgagatgatgaaagggcaaagggggtggagggaactggctgaattgggggacaagggacaaaagtttactggcatgttagaaggcataatatggtccccgaaacctggagagtcagataaacctgaggacacttggactgaggagggtcctcattctcattttcctgggccaacatctggaagcactgcttgtgtggctatcataagaaatgatgaactcattgttgcaaatgctggtgattcccggtgtgtgctctcaaggaagggtcgagcttatgacctgtcaaaagatcacaagccagatcttgatgcagaaaaggagaggatactgaatgctggtggtttcattgttgctgggcgggtcaatggaagtttgaacttggcaagggcaataggggatatggaattgaagcagaatgaatttctcccagccgagagacagattgtcactgctgaacctgaattaaacacagttaaactttctgaggatgatgagttcatcgttttagcatgtgatggcatatgggattgcatgtcaagtcaagaagtggtggactttgttcacaaagaaatgaacactgaggatagcctatctgctgtctgcgagaagttgcttgaccattgcttggcacctgtatccggtggtgatggctgtgataatatgacagtgatcatagtcaagttcaagaagccaagcaagtcagctgctacttcaagcacaaatcaatctgtctcttcagaagagatgcgaccaaaaatttga</cdnaseq>|
 
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AA = <aaseq>MGVYLSTPKTEKYSGEGGNDRLRYGLASMQGWRTTMEDAHTALP                    RLDECTSFFGVYDGHGGKAVSKFCAKHLHLQVLKNEAYSSGDLATSVLKSFFRMDEMM                    KGQRGWRELAELGDKGQKFTGMLEGIIWSPKPGESDKPEDTWTEEGPHSHFPGPTSGS                    TACVAIIRNDELIVANAGDSRCVLSRKGRAYDLSKDHKPDLDAEKERILNAGGFIVAG                    RVNGSLNLARAIGDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWDC                    MSSQEVVDFVHKEMNTEDSLSAVCEKLLDHCLAPVSGGDGCDNMTVIIVKFKKPSKSA                    ATSSTNQSVSSEEMRPKI</aaseq>|
 
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DNA = <dnaseqindica>4241..4247#3982..4157#3809..3863#3255..3307#3096..3172#2890..3013#2680..2805#1844..1994#1635..1743#1001..1064#405..521#acgcaatcttccccgaatcccccacccctcctcatctccctccttcccttccgcctccgcctccgactcctcctctccggctctcctctcctcttcccgtcgcttccgccccctacaaatactcgcccacctcctcctcccctccccttcgcttcctcctcacctcgcctctcctcgcctcgccgccgcctcctccctcgtcgtcgtcgtcgtcgtgagtaccctcctcctcccactcctcatcccctgcttcgattccgcgatgtttggttccgtggcgaagatcgcccgcggggatcgggggagcgccactgtttttgcgattgtgattggggtttgcgtttgtaataacggtgctggttggatgcaggggggtgtttggggggattcggttgggcggcgacatgggggtgtacctgagcacgcccaagacggagaagtactccggcgagggcgggaacgaccgcctccgctacggcctcgcatccatgcagggatggcggacgaccatggaggacgcggtgagttgagttccttccttccttcctccctccctctgtttccccttccacattacattattgttggcttctgctttctggttgattcgccaccaccctaggacccggaattcgcaactgttttttaggtcaggattgtctctcgtagatttgcttgattggttagccgccaaaagttgttgttccggggaactggctacgtggattgattccaattgcgttcgccaatggtggtgttctgttgccccaatgataagactcacggtagccttttgttgcgccttgtcacttgcatttggagtccagtgccgatactagggcagataaattgatcacgatgattagcactaggagtgccgttcgacattgagttctcattgatttggcatgacattagggaccgtttcaggtgaaattagattgaattagtggctgtacctgttctttaaacgcttattgagtgcatccttacattgcagcacactgccctgccacgcctggacgaatgcacatccttttttggtgtctatgatggccatggaggtaagttttttcattgattttctgttcatgtccaactcgctattatgttgcatcttcagatctaaacaaagacgagtgcgatttaatgcctaccatttggtgattgaattaatatcatcttacaactttatccattactagttgcaaatgattggtgcctctgtagtttcgatggcataaccttagcaagttcaattaagcatcgccaactttcacctaacaaactacacatattaggtaacctgagctgtgttgagttgatgataatctcatccattcatttattcatcatctcatccattcatgcagattaggtaaacttagctgtgttgagtttggtagtccagtaacctaacagggaaataacaatcaaacagtccaacattttcacattccctttttgatcgttgtaaaaggtagaagtgcattgagtaggtttaaattgattcatctttttcatatattttttttgaaaccaaaacttaatgcgcttctatgttgtccttttatccacatcatggacaaaactctttatgttgtgacttgacaaactgtcctttgtaattccagggaaggcagtatctaagttttgtgcgaaacatctacacttgcaagtactgaaaaatgaggcttattcatctggtgatttggctacttctgtcttaaagtcatttttcaggtatgtagcatgtacctcttttgaacatgaagtgcttttcagtgaaactatcgtatgcttggtggttttaatgagtctgcaccgctttttaccctttcagaatggatgagatgatgaaagggcaaagggggtggagggaactggctgaattgggggacaagggacaaaagtttactggcatgttagaaggcataatatggtccccgaaacctggagagtcagataaacctgaggacacttggactgaggaggtaaaactgctattctaaaagttccttcattaccaaccatttttgctggatgatggaattgaggggccatctttgatgtcatgatgcttcagagttattccttggtagaacaagcatttgacgggataaaatactaaaaactgattcgatgctagtaattctgaattcatatttaaagaggcttgtcttgagtggtgctgctcttaagtatgtggattggtgaagggggcttggtcctgcttgttatgtgattagggtttctgcagagagggatgtctttcttaaaatacccatttaaatccttaagggatgtctctctagtagttatcttgaaaatatgagaagtgctcttgagtcaggagtgcctatgatcgttgcatctgaaacttaggtcaacactagtttatattagaaggtgatgtccagttatttttaagcatgataacatgtgatctaaaattcatttggtgaaatacattattacaaaatatgtttgtacaaataaggaaaacaaagggaatatgcaccattcgttagcactgagcatatatgtaacttacgaaacatcagctccagagttctatatttttatacatgaccttgtttcctaaaaagaaactgttcttgtgaaattctagtgaatgtagagttcaactaaactgctctaactaagttacttaaccagggtcctcattctcattttcctgggccaacatctggaagcactgcttgtgtggctatcataagaaatgatgaactcattgttgcaaatgctggtgattcccggtgtgtgctctcaaggaagggtcgagtacgtcagtcagacctctatatctctggttttatttgtgaagaaaatgttagaatatgtgtcctgactcagtcttctgcataggcttatgacctgtcaaaagatcacaagccagatcttgatgcagaaaaggagaggatactgaatgctggtggtttcattgttgctgggcgggtcaatggaagtttgaacttggcaagggcaataggtagcaccctctcttctcatcgaaaaacaattccttagctacacgcataatttttatttatccttttgtgcttttccaccaggggatatggaattgaagcagaatgaatttctcccagccgagagacagattgtcactgctgaacctgaattaaacacagtgggttttgttgacaatttctgtcactgtatttgctttggacaacattttttgtaacatggaatttattcggcttgctcaggttaaactttctgaggatgatgagttcatcgttttagcatgtgatggcatatggtatgtcctttgcaccaatcattctctcttgaatatcttattgagataaacaattttagctatttttaccatctggtgtagctgctgctgatttttgacaactcaattttccaacaacagttttagtttattagcagatttgatttttttagtaaaaagaaacaatagttgtaattagggtaagtccaaagaaatgacatcatcttctattggtaaaccatttggacagcccttggagatagtaattcacaattctttttagatgatgtgtactagtgcactgtgtggcgtgcagatgctgatatgtaacttcttttataatggatcccagatacataaacatccagataactttgtatactagatgtgaagctgattttttatacctgcagttattttgaaatggtgctagatcttttgtcaactcttctatggattattctgtattctttgtagtttcactggatagtttatctgagacgtaaatttatcttatgacagggattgcatgtcaagtcaagaagtggtggactttgttcacaaagaaatgaacactgtaagcaactgatattcacagaatttacattatgcactaaaaatatatagttcatagtgttgtgttttgcaatatgcttatgttatggtttcctaatttactgggaaaacaactacaggaggatagcctatctgctgtctgcgagaagttgcttgaccattgcttggcacctgtatccggtggtgatggctgtgataatatgacagtgatcatagtcaagttcaagaagccaagcaagtcagctgctacttcaagcacaaatcaatctgtctcttcagaagagatgcgaccaaagtgagcttcctttaaccgtcgcacctaaaccatattccagatcacgaaatctcgcattgtaaaagcctgagttcccctttcagaatttgagcccttacctttgtgaacagcgagcttgatgatggcccaagcgatccaaacaagtagcaggccgagaccgaaccatggagttccaaccggtgatagacaaaaaggatagtaagtggtgtatataagaaaagggattctattctacagtcactatagggtttgttctttctttcaactagcatctttttcttgcaccacaacctgtaatacatgccatgttgcttaatcgaactgggttgtgtgaaatgcatgaattttccaatgc</dnaseqindica>|
 
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070443.1 RefSeq:Os09g0558000]|
 
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}}
 
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[[Category:Genes]]
 
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[[Category:Japonica mRNA]]
 
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[[Category:Oryza Sativa Japonica Group]]
 
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[[Category:Japonica Genes]]
 
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[[Category:Japonica Chromosome 9]]
 
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[[Category:Chromosome 9]]
 

Latest revision as of 12:04, 29 March 2017

The rice Os09g0558000 was reported as OsPP2C70 in 2008 [1] by researchers from China.

Annotated Information

Gene Symbol

  • Os09g0558000 <=> OsPP2C70

Function

  • The protein phosphatase 2Cs (PP2Cs) from various organisms have been implicated to act as negative modulators of protein kinase pathways involved in diverse environmental stress responses and developmental processes.[1]
  • Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis.[1] [2]

Expression

  • The expression analyses from the researchers provide evidences that PP2C genes in different subfamilies might play different functional roles in distinct signaling pathways.[1]

Knowledge extension

  • The reversible phosphorylation of proteins is a fundamental mechanism by which living organisms modulate cellular processes including cell cycle events, growth factor responses, hormone and environmental stimuli responses, metabolic control, and developmental processes.[1]

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, PR China
  • Biology Department, Millersville University of Pennsylvania, 288 Roddy Hall, 50 E Frederick St, PO Box 1002, Millersville PA, 17551-0302, USA
  • Department of Chemistry, Fudan University, 220 Handan Road, Shanghai 200433, PR China
  • Institutes of Biomedical Sciences, Fudan University, 130 Dongan Road, Shanghai 200032, PR China
  • Centre for Forest Biology & Department of Biology, University of Victoria, Victoria BC, V8W 3N5, Canada

References

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Xue T, Wang D, Zhang S, Ehlting J, Ni F, Jakab S, Zheng C, Zhong Y. Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis. BMC Genomics. 2008 Nov 20;9:550. doi: 10.1186/1471-2164-9-550. PubMed PMID: 19021904; PubMed Central PMCID: PMC2612031.
  2. ↑ Umezawa T, Sugiyama N, Mizoguchi M, Hayashi S, Myouga F, Yamaguchi-Shinozaki K, Ishihama Y, Hirayama T, Shinozaki K. Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17588-93. doi: 10.1073/pnas.0907095106. Epub 2009 Sep 29. PubMed PMID: 19805022; PubMed Central PMCID: PMC2754379.

Structured Information