Difference between revisions of "Main Page"

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<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to RiceWiki</div>
 
<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to RiceWiki</div>
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<div style="padding:0em; font-size:100%">[[:Category:Genes |66,390]] rice genes inside</div>
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<div style="padding:0em; font-size:100%">[[:Category:Genes |86,216]] rice genes inside</div>
 
<div style="padding:0em; font-size:100%; color:#492;">'''Contribute your efforts, further our knowledge.'''</div>
 
<div style="padding:0em; font-size:100%; color:#492;">'''Contribute your efforts, further our knowledge.'''</div>
  
 
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*<span class=plainlinks>[[:Category:Genes|Genes]]</span>
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*<span class=plainlinks>[[Special:CuratedGenes|'''Genes''']]</span>
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*[[RiceWiki:GeneFamilies|Gene Families]]
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*[[RiceWiki:Omics Knowledge Portal for Rice|'''Omics Knowledge''']]
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*[[RiceWiki:Chromosomes|Chromosomes]]
 
 
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*[[RiceWiki:Databases|Databases]]
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*[[Special:BLAST|'''BLAST''']]
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*[[Special:ListUsers|Registered Users]]
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*[[RiceWiki:Templates|'''Templates''']]
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*<span class=plainlinks>[[Special:AuthorReward| Contributions]]</span>
 
 
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*[[RiceWiki:Genome_Browser|Genome Browser]]
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*[# '''Genome Browser''']
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*[[RiceWiki:Templates|Templates]]
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*[http://ngdc.cncb.ac.cn/databasecommons/search?term=Oryza%20sativa '''Databases''']
 
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----
 
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<div style="padding:0.5em 0.5em;">
 
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*Featured genes: [[Os01g0883800]], [[Os02g0170300]], [[Os03g0149100]], [[Os08g0162100]], [[Os09g0114500]], [[Os10g0405500]]
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{|
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*Community curation: [[RiceWiki:TBC|genes to be curated]]
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*[[Media:CommunityCuration-RiceWiki.pptx]] [[File:Ppt_ico.gif | link=File:CommunityCuration-RiceWiki.pptx]]
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*More than [[Special:CuratedGenes|'''1000 manually curated genes''']] are validated as high quality in RiceWiki.
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*Gene Expression Profiles retrieved from the [https://ngdc.cncb.ac.cn/red '''''IC4R-RED'''''] are integrated in RiceWiki.
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*[[Special:AuthorReward |'''Quantified contributions''']] of all curators are calculated by: [http://www.ncbi.nlm.nih.gov/pubmed/23732274 ''AuthorReward'']
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*[# '''35,717 Scientific Articles'''] associated with rice are provided for curators.
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*Here, is a [[RiceWiki:TBC|'''List of genes ''']]to be curated for the next season. If you are interested, just [[RiceWiki:Joining|'''contact us''']].
 +
|
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'''      |*******Recently Curated Genes*******|'''<br>'''    [[Os06g0683400]]''', '''[[Os03g0125100]]''', '''[[Os01g0192000]]'''    <br>'''    [[Os01g0848400]]''', '''[[Os06g0107700]]''', '''[[Os10g0563600]]''' <br>'''    [[Os01g0919400]]''', '''[[Os03g0180800]]''', '''[[Os12g0583700]]'''<br>'''    [[Os09g0306400]]''', '''[[Os10g0553300]]''', '''[[Os09g0286400]]'''
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<div style="background:#FFFF00; border-bottom:1px solid #c6c6c6; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Register</div>
 
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<div style="padding:0.5em 0.5em;">Please follow the steps below to get your own ricewiki account:<br />
 
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# Send an email to <b>ricewiki(AT)big.ac.cn</b>, providing your preferred <b>login name</b> and <b>email address</b>.<br />
 
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# An automatically generated email with password will be sent to your email address on the same day, or one day after you sent your information mentioned in step 1. So please check your email, especially your junk email if you didn't get back from ricewiki(AT)big.ac.cn.<br />
 
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# In case your cannot find the email with the password, please contact <b>ricewiki(AT)big.ac.cn</b> to get support. <br /></div>
 
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<!--------------main part one---------------->
 
<!--------------main part one---------------->
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
|-
 
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<!-----------Rice Genome Overview------------>
 
<!-----------Rice Genome Overview------------>
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Rice Genome Overview</div>
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:120%; font-weight:bold;">Omics Knowledge Portal for Rice (OKP4R)</div>
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<div style="padding:1em 0em 0em 0em; text-align:center;">[[image:RiceG.jpg]]</div>
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<div style="width:515px;padding:0.5em 0.5em;font-size:100%;">
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== ==
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* '''OKP4R''': a multidisciplinary portal to share omics knowledge for rice. [[RiceWiki:Omics_Knowledge_Portal_for_Rice|'''(More...)''']]<br>
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<div style="padding:0.2em 0.5em;">
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[[File:IC4R_Omics_Pic_Jian.png|right|505px|'''Figure 1. Omics Knowledge Portal for Rice'''|link=RiceWiki:Omics_Knowledge_Portal_for_Rice]]
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====[[:Category:Japonica Genes | ''Oryza sativa Japonica'' Group]]====
 
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'''Chromosome'''
 
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[[:category:Japonica Chromosome 1|'''1''']].
 
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[[:category:Japonica Chromosome 2|'''2''']].
 
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[[:category:Japonica Chromosome 3|'''3''']].
 
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[[:category:Japonica Chromosome 4|'''4''']].
 
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[[:category:Japonica Chromosome 5|'''5''']].
 
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[[:category:Japonica Chromosome 6|'''6''']].
 
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[[:category:Japonica Chromosome 7|'''7''']].
 
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[[:category:Japonica Chromosome 8|'''8''']].
 
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[[:category:Japonica Chromosome 9|'''9''']].
 
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[[:category:Japonica Chromosome 10|'''10''']].
 
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[[:category:Japonica Chromosome 11|'''11''']].
 
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[[:category:Japonica Chromosome 12|'''12''']].
 
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[[:category:Japonica_Mitochondrion|'''Mt''']].
 
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[[:category:Japonica_Plastid|'''Pd''']]
 
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====[[:Category:Indica Genes | ''Oryza sativa Indica'' Group]]====
 
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'''Chromosome'''
 
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[[:category:Indica Chromosome 1|'''1''']].
 
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[[:category:Indica Chromosome 2|'''2''']].
 
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[[:category:Indica Chromosome 3|'''3''']].
 
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[[:category:Indica Chromosome 4|'''4''']].
 
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[[:category:Indica Chromosome 5|'''5''']].
 
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[[:category:Indica Chromosome 6|'''6''']].
 
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[[:category:Indica Chromosome 7|'''7''']].
 
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[[:category:Indica Chromosome 8|'''8''']].
 
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[[:category:Indica Chromosome 9|'''9''']].
 
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[[:category:Indica Chromosome 10|'''10''']].
 
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[[:category:Indica Chromosome 11|'''11''']].
 
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[[:category:Indica Chromosome 12|'''12''']]
 
 
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<!-----------------Rice---------------------->
 
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Rice Story</div>
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[[File:Damifan.jpg|right|120px|margin: 5px|]]
 
 
*As an important food
 
*As an important food
 
:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
 
:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
 
*As a biological model
 
*As a biological model
 
:Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, ''indica'' and ''japonica'', were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.</div>
 
:Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, ''indica'' and ''japonica'', were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.</div>
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|<div style="font-size:110%; font-weight:bold;">Recent Modified Genes</div> {{RecentActivity:type=edits|count = 10}}
 
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|<div style="font-size:110%; font-weight:bold;">Highly Accessed Genes</div> {{RecentActivity:type=visits|count = 10}}
 
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|<div style="font-size:110%; font-weight:bold;">Most Annotated Genes</div> {{RecentActivity:type=contributes|count = 10}}
 
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<!---------------Omics Knowledge Portal for Rice----------------->
 
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<div style="background:#f4f4f4; border-bottom:1px solid #c6c6c6; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Publications</div>
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<!-----------English------------>
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|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:40%"|
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* [http://www.ncbi.nlm.nih.gov/pubmed/24136999 RiceWiki: a wiki-based database for community curation of rice genes] (2014) ''Nucleic Acids Research'', 42(D1),D1222-D1228.
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Featured Research</div>
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* [http://www.ncbi.nlm.nih.gov/pubmed/23732274 AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification] (2013) ''Bioinformatics'', 29(14):1837-1839.
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<script src="http://cdn.tagul.com/embed/tc86pr9cqqh1"></script>
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<a href="http://tagul.com/">Created with Tagul.com</a>
 
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;"> Latest News </div>
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<div style="padding:0.5em 0.5em;font-size:100%;">
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* '''Sep 04th, 2017''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/bdf2017 The 2017 Big Data Forum for Life and Health Sciences] will be held in Beijing China from October 13th to 17th.
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* '''Jun 07th, 2017''': The Upcoming Conference Note: [http://www.ibc2017.cn/ The XIX International Botanical Congress in 2017] will be held in Shenzhen China from July 10th to 13th.
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* '''May 20th, 2017''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/dpd The Workshop on DNA Methylation and Precision Medicine] will be held in Beijing China from June 08th to 10th.
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* '''Nov 05th, 2016''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/bdf The 2016 Big Data Forum for Life and Health Sciences] will be held in Beijing China from December 05th to 08th.
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* '''Jun 22th, 2016''': [[Omics Knowledge Portal for Rice| The Omics Knowledge Portal for Rice]] was launched at RiceWiki.
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</div>
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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Joining RiceWiki</div>
 
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<div style="padding:0.5em 1em;">
 
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* RiceWiki allows any user to view and search but only registered users can add and edit content.
 
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* To become a registered user, please email the RiceWiki Team at [mailto:ricewiki@big.ac.cn ricewiki@big.ac.cn] to tell us your preferred login name, real name, research interests, etc., and we will set up an account for you.
 
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* Please also spread this news to any one who might be of interest. [[File:Ppt_ico.gif | link=File:CommunityCuration-RiceWiki.pptx]]</div>
 
  
 
<!-------------Lab Information-------------->
 
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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Publications</div>
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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">About Us</div>
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<div style="padding:0.5em 1em;">Our group works in the field of [http://cbb.big.ac.cn Computational Biology and Bioinformatics] (CBB), currently with a particular focus on building biological knowledge wikis in aid of community curation of massive biological knowledge.
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'''Primary publication:'''<br>
 +
*'''RiceWiki: a wiki-based database for community curation of rice genes.''' ''Nucleic Acids Research'' (2014), 42(Database issue):D1222-1228. [http://www.ncbi.nlm.nih.gov/pubmed/24136999 PMID=24136999]
 +
'''Related publications:'''
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*'''Information Commons for Rice (IC4R).''' ''Nucleic Acids Research'' (2016), 44(D1):D1172-1180. [http://www.ncbi.nlm.nih.gov/pubmed/26519466 PMID=26519466]
 +
*'''Bringing biocuration to China.''' ''Genomics Proteomics Bioinformatics'' (2014), 12(4):153-155.[http://www.ncbi.nlm.nih.gov/pubmed/25042682 PMID=25042682]
 +
*'''AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.''' ''Bioinformatics'' (2013), 29(14):1837-1839.[http://www.ncbi.nlm.nih.gov/pubmed/23732274 PMID=23732274]]
 
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Latest revision as of 02:37, 25 November 2025


Welcome to RiceWiki
86,216 rice genes inside
Contribute your efforts, further our knowledge.
Introduction
RiceWiki, a project of IC4R (Information Commmons for Rice) as well as a component of ScienceWikis, is a wiki-based, publicly editable and open-content platform for community curation of genes and Omics Knowledge in rice, viz., a community-curated resource of rice knowledge. Unlike conventional biological databases based on expert curation, RiceWiki harnesses collective intelligence to collect, edit and annotate information about rice, quantifies users' contributions in each annotated gene and provides explicit authorship for each contributor to encourage more participation from the whole scientific community. Welcome to join us !
Nothing great is ever accomplished in isolation. – Yo-Yo Ma
      |*******Recently Curated Genes*******|
     Os06g0683400, Os03g0125100, Os01g0192000     
     Os01g0848400, Os06g0107700, Os10g0563600 
     Os01g0919400, Os03g0180800, Os12g0583700
     Os09g0306400, Os10g0553300, Os09g0286400
Omics Knowledge Portal for Rice (OKP4R)
  • OKP4R: a multidisciplinary portal to share omics knowledge for rice. (More...)
Figure 1. Omics Knowledge Portal for Rice
Rice Story
  • As an important food
Rice is the seed of the monocot plants Oryza sativa (Asian rice) or Oryza glaberrima (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 (Full article...).
  • As a biological model
Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, indica and japonica, were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.
Featured Research

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<script src="http://cdn.tagul.com/embed/tc86pr9cqqh1"></script> <a href="http://tagul.com/">Created with Tagul.com</a>

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Latest News


Publications

Primary publication:

  • RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Research (2014), 42(Database issue):D1222-1228. PMID=24136999

Related publications:

  • Information Commons for Rice (IC4R). Nucleic Acids Research (2016), 44(D1):D1172-1180. PMID=26519466
  • Bringing biocuration to China. Genomics Proteomics Bioinformatics (2014), 12(4):153-155.PMID=25042682
  • AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification. Bioinformatics (2013), 29(14):1837-1839.PMID=23732274]
Visitor Statistics

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