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| − | {{JaponicaGene|
| + | The rice '''''Os04g0569100''''' was reported as '''''Roc4''''' in 2016 <ref name="ref1" /> by researchers from China and Korea. |
| − | GeneName = Os04g0569100|
| + | ==Annotated Information== |
| − | Description = Similar to OCL1 homeobox protein|
| + | ===Gene Symbol=== |
| − | Version = NM_001060130.1 GI:115459989 GeneID:4336705|
| + | *'''''Os04g0569100''''' '''''<=>''''' '''''GL2-4''''' '''''Roc4''''' '''''Roc4(t)''''' |
| − | Length = 6340 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os04g0569100, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ===Function=== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *'''''Roc4''''' regulates flowering time mainly through Ghd7. |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Roc4''''' is an LD-preferential flowering enhancer that functions downstream of phytochromes and OsGI, but upstream of Ghd7. |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Expression=== |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| + | *Expression of Rice outermost cell-specific gene 4 ('''''Roc4'''''), encoding a homeodomain Leu-zipper class IV family protein, was significantly increased. |
| − | AP = Chromosome 4:28999193..29005532|
| + | |
| − | CDS = 28999724..29000074,29001042..29001415,29001489..29001666,29003361..29003588,29003687..29003788<br>,29003873..29004580,29004698..29004815,29004913..29005205,29005328..29005396<br>|
| + | ===Phenotypic analysis=== |
| − | GCID = <gbrowseImage1>
| + | *constitutive overexpression of '''''Roc4''''' in‘Dongjin’ japonica rice, which carries active Ghd7, also caused LD-preferential early flowering, its overexpression in ‘Longjing27 rice, which is defective in functional Ghd7, did not produce the same result. |
| − | name=NC_008397:28999193..29005532
| + | |
| − | source=RiceChromosome04
| + | |
| − | preset=GeneLocation
| + | You can also add sub-section(s) at will. |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | ==Labs working on this gene== |
| − | name=NC_008397:28999193..29005532
| + | |
| − | source=RiceChromosome04
| + | *Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Republic of Korea |
| − | preset=GeneLocation
| + | *Department of Life Science, Pohang University of Science and Technology, Pohang 790-784, Republic of Korea |
| − | </gbrowseImage2>| | + | *The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People’s Republic of China |
| − | CDNA = <cdnaseq>atgcagttcccgttctccggcgctggcccgggcgtcttcacgtcatcgccggcgctctccctcgcgctggcggacgcggtggcaggccggaacagcggcggcggtgggaagatggttaccgcggcccatggcggcgtcggcggaggaggaggaggaggacgcgcgaaggcgagggacgcgttggaggtggagaacgagatgagccggtccgggagcgaccacctcgacgtcgtctcttgcggcgacgcgggcggcggcggcggcgacgacgacgatgacgaggacgccgagcacggcaacccgcccaagcgcaagaagcggtaccaccgccacacgccgcagcagatccaagagctggaagcgatgttcaaggaatgcccccacccagacgagaagcagcgcgccgagctgagcaagcggctcggcctcgaaccccggcaggtcaagttctggttccagaatcggcgaacgcagatgaagatgcaactggagcgacacgagaactcgctgctgaagcaggagaacgataagctgcggtccgagaacctgtcaatccgggaggccacgagcaacgcggtgtgcgttggctgcggcggcccggcgatgctcggggaggtgtccctggaggagcaccaccttcgcgtcgagaacgcgaggctcaaggacgagctcagccgagtgtgcgcgctcgccgccaagttccttggcaagtccatctctgtcatggcgccaccgcagatgcatcagcctcatcctgtgccaggctcgtcgctggagcttgcggttgggggtatcggttcgatgccatcagccacgatgcccatctcgacgatcactgattttgctggcgccatgtccagttcaatgggcacggtgatcacgcccatgaagtctgaggctgaaccatcggcaatggctggcattgacaagtccttgttcttggagctagcaatgagtgcaatggatgagctagtcaagatggctcagatgggggatccgctatggattccaggtgcctccgtaccttcctcgccggcaaaggagagtctaaacttcgaggagtacctaaacaccttcccaccttgcatcggggtgaagcctgaagggtatgtatcagaggcatctagagaatctggcattgtcatcattgacgatggcgccgcgcttgtggagaccctcatggatgagcgacggtggtccgatatgttctcatgcatgattgccaaggcatcaaccactgaggagatttctactggtgttgctgggagtagaaatggtgcattgcttcttatgcaggcagagctacaggtgctttctcctcttgtgcctattagagaggtgaagtttctcaggttctccaaacagctggctgatggtgtatgggctgtagtggacgtttcggctgatgaattgatgagggatcagggcattacttctgcatcctcgactgcaaacatgaactgccgaaggctgccttctggttgtgtgctgcaggacactccaaatgggtttgttaaggtcacatgggttgaacatacagaatatgatgaggcatctgtgcacccgctctaccggcctcttctccggtctggtcttgcccttggtgcagggcgatggatcgcgacattacagcggcagtgcgaatgcttggcccttctcatgtcttctattgcattgccagagaacgactcatcagctatccatcctgaaggtaaacggagcatgttgaagttggcaaggaggatgacggacaacttctgtgcaggggtgagcacatcatctacccgtgaatggagcaaactggttggattgacaggcaacattggggaggatgtgcatgtaatggcgcggaagagtgtggatgaacctggaacgccgccaggtgtggtgcttagtgctgctacatctgtgtggatgcctgtgatgcctgaacggctcttcaacttcttgcacaacaaggggctgcgtgctgaatgggatatcctcagcaatggtggccctatgcaggaggtgacaagcattgccaaggggcaacagaatggcaataccgtatgtctactgaaggctagtcccaccaaagacaagcagaacagcatgctgatcctacaggagacgtgtgcagacgcatccggttcaatggttgtgtatgctcctgtagacatcccagcaatgcaccttgtcatgagtggtggggattcgtcatgcgtcgcccttcttccatcaggttttgccatcctgcctgctgggcctagcatcggcgcagatcacaagatgggcggttcattgctcaccgttgcattccagatacttgccaacagccagcccagtgctaagctcacggtggagtcagtcgagaccgtgagcaaccttatctcctgcaccatcaagaagatcaagacggcgctgcattgcgacgtgtga</cdnaseq>|
| + | |
| − | AA = <aaseq>MQFPFSGAGPGVFTSSPALSLALADAVAGRNSGGGGKMVTAAHG GVGGGGGGGRAKARDALEVENEMSRSGSDHLDVVSCGDAGGGGGDDDDDEDAEHGNPP KRKKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMK MQLERHENSLLKQENDKLRSENLSIREATSNAVCVGCGGPAMLGEVSLEEHHLRVENA RLKDELSRVCALAAKFLGKSISVMAPPQMHQPHPVPGSSLELAVGGIGSMPSATMPIS TITDFAGAMSSSMGTVITPMKSEAEPSAMAGIDKSLFLELAMSAMDELVKMAQMGDPL WIPGASVPSSPAKESLNFEEYLNTFPPCIGVKPEGYVSEASRESGIVIIDDGAALVET LMDERRWSDMFSCMIAKASTTEEISTGVAGSRNGALLLMQAELQVLSPLVPIREVKFL RFSKQLADGVWAVVDVSADELMRDQGITSASSTANMNCRRLPSGCVLQDTPNGFVKVT WVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCECLALLMSSIALPENDSSA IHPEGKRSMLKLARRMTDNFCAGVSTSSTREWSKLVGLTGNIGEDVHVMARKSVDEPG TPPGVVLSAATSVWMPVMPERLFNFLHNKGLRAEWDILSNGGPMQEVTSIAKGQQNGN TVCLLKASPTKDKQNSMLILQETCADASGSMVVYAPVDIPAMHLVMSGGDSSCVALLP SGFAILPAGPSIGADHKMGGSLLTVAFQILANSQPSAKLTVESVETVSNLISCTIKKI KTALHCDV</aaseq>|
| + | ==References== |
| − | DNA = <dnaseqindica>5459..5809#4118..4491#3867..4044#1945..2172#1745..1846#953..1660#718..835#328..620#137..205#gcacgcactgctgctgctgctcgctctcgctttgcttcccctaatcttctcccgggccaggggggaagaggggcggaattcgggcacgagctttggagttggagatcacttcggcgacggcgtggtccccgccggcatgcagttcccgttctccggcgctggcccgggcgtcttcacgtcatcgccggcgctctccctcgcgctggtacgcgcgccttcttcgctgacgtgttggggggtttttgtttcttttttttttttggtggtgatacggtcgagtgattcggaaaggcgcgtcttttctttggttggttcggtttgtcgcaggcggacgcggtggcaggccggaacagcggcggcggtgggaagatggttaccgcggcccatggcggcgtcggcggaggaggaggaggaggacgcgcgaaggcgagggacgcgttggaggtggagaacgagatgagccggtccgggagcgaccacctcgacgtcgtctcttgcggcgacgcgggcggcggcggcggcgacgacgacgatgacgaggacgccgagcacggcaacccgcccaagcgcaagaagcggtaccaccgccacacgccgcagcagatccaagagctggaagcgtaagcgcgcccccacccacgaacaacgattcgttgcattctcctgtgcttggctgcttgctttggctcatgcatggatactggctcatcggtgcaggatgttcaaggaatgcccccacccagacgagaagcagcgcgccgagctgagcaagcggctcggcctcgaaccccggcaggtcaagttctggttccagaatcggcgaacgcagatgaaggtaagcgatcgaaacgaacagcaaaccatctttgcactccgatcgatggtgcagtgcagttcttgacactgtgtgtgtgtgtgtctctctctccctgtggtgattgaattggcaaagatgcaactggagcgacacgagaactcgctgctgaagcaggagaacgataagctgcggtccgagaacctgtcaatccgggaggccacgagcaacgcggtgtgcgttggctgcggcggcccggcgatgctcggggaggtgtccctggaggagcaccaccttcgcgtcgagaacgcgaggctcaaggacgagctcagccgagtgtgcgcgctcgccgccaagttccttggcaagtccatctctgtcatggcgccaccgcagatgcatcagcctcatcctgtgccaggctcgtcgctggagcttgcggttgggggtatcggttcgatgccatcagccacgatgcccatctcgacgatcactgattttgctggcgccatgtccagttcaatgggcacggtgatcacgcccatgaagtctgaggctgaaccatcggcaatggctggcattgacaagtccttgttcttggagctagcaatgagtgcaatggatgagctagtcaagatggctcagatgggggatccgctatggattccaggtgcctccgtaccttcctcgccggcaaaggagagtctaaacttcgaggagtacctaaacaccttcccaccttgcatcggggtgaagcctgaagggtatgtatcagaggcatctagagaatctggcattgtcatcattgacgatggcgccgcgcttgtggagaccctcatggatgaggttgtgcttgtgccaccttaccccctttcatgtttctgttgcttgtttgtttggactcacctgtagtttgaattcttgcgacagcgacggtggtccgatatgttctcatgcatgattgccaaggcatcaaccactgaggagatttctactggtgttgctgggagtagaaatggtgcattgcttcttgtgagtgatgaacattctgttgtggccatcccatgagtttcatgtggttaatcatactagcataacccctgaatggtaaatttcgatcattgcaacagatgcaggcagagctacaggtgctttctcctcttgtgcctattagagaggtgaagtttctcaggttctccaaacagctggctgatggtgtatgggctgtagtggacgtttcggctgatgaattgatgagggatcagggcattacttctgcatcctcgactgcaaacatgaactgccgaaggctgccttctggttgtgtgctgcaggacactccaaatgggtttgttaaggtactgagactgattatctttgttagctcctgctccttagatattcttaggtaaatgtcttaaaccgtgatatccttgactagttcacttcagggtagtatgtggttttacatctattaattcacactagtcagcatgctatcggttgacgtgaaactcatctaccttgcaaagtcgcagctcggtagtacccacgacgctgccactagaagtctgtcaaaaccagccatattagttgcaaagcttgttagctctactcatatgataatcatacatatggagagtgctttattagttcaggctctctgcaactaacatgacactcatggaaaagagtattcgtgtattctttcgtaatgtttcaaataatgtatgttagtttaatgtgtcatctggtgatcaccatgcaatattttgttcgtattcacaagtcatggcgtaggctcatgtctcctatagatatgttgtggttatgagtccataatccgaagtaaagtattgtattggtcagcggggaggggagtaaataaatgatttaggaatacttaagtggttctgagatccaacacttttccccaagtacgctcccttgcttttgtttagtcctgagttcagttctcctaggggattagatacttcttctactcctgggatggtgccccttgggtaacttcttgtccgcagtttaatcgatgcgtctcctcgttgaaatcttgactgcttcctctattgttttgtctcaatgtaaaagtcctcttcaccttgggttttgtaccagagttttatatagccttgatccaaattgctctggggcgcacacatgcacgaacgattctattcaaaattctaaattggacatctgaatgggacaaatatatctagtctacaatggtagaaacatgatttgatgagttataacgtctcattactatagattacactgtataagttaatctgatgtaaacccacaggttgaaagcaggaagtggttctttattttaagggttcaggaacacaatattttggaacactagtggtgtgccattcttggggcataccataagtcaaaataattaacgatgaagatactgtgatcagaaccatgctttataaaatgtaaacaaagtcaatctcagacagatcagctaatcctagatcaaactagagatactgtcgtctctcaagatttctacttttcttctgtaatttcatttatgtgcttttggtgcttttacagtatttagttcaaatatcagtattttctgaagtctataatctctctattgatcagtttctggatctgcctcctgctttcatggtacttctatggtttattctatgcaaaacagaatagacaaatgtgtaactattatccattagtcctatggcctatggttctcttacaaagtactagttacaatgctggggccccactatgggctaatatttcgaggtagcctctattttaaaacattgtgttgatgtcctttttatgttccattgattgggcaaaaagaaattaaaaaaaaacttagatggaaaaataatattaattgtaccattcagcttgtgtagtagttgcgtactccaggaaaactgcacctcaggcctcttttggtgtattacctctcaagacatttgcattttgtgcgtgcatttaagtcctaacagcagatcttgaatggacgctgtaggtcacatgggttgaacatacagaatatgatgaggcatctgtgcacccgctctaccggcctcttctccggtctggtcttgcccttggtgcagggcgatggatcgcgacattacagcggcagtgcgaatgcttggcccttctcatgtcttctattgcattgccagagaacgactcatcaggtaaagaaattcaatactactgctaactttcaattggatccacccttctaataaagtgctacatttgcaacagctatccatcctgaaggtaaacggagcatgttgaagttggcaaggaggatgacggacaacttctgtgcaggggtgagcacatcatctacccgtgaatggagcaaactggttggattgacaggcaacattggggaggatgtgcatgtaatggcgcggaagagtgtggatgaacctggaacgccgccaggtgtggtgcttagtgctgctacatctgtgtggatgcctgtgatgcctgaacggctcttcaacttcttgcacaacaaggggctgcgtgctgaatgggatatcctcagcaatggtggccctatgcaggaggtgacaagcattgccaaggggcaacagaatggcaataccgtatgtctactgaaggctagtgtgagtattagctaacagtctgccacagttctgttcatagcttgctacttactaaacagcatcattaactgacttgtgggggagactgccatttcaaaattgttgcaaacctaaacacaacattttagaatttgttgggggcaccacatcactaaacactctaaacaatcacatgcttgtctgaaaccagtttaatgtgaaataatttagaatttgtgaaaagagtacccttgcttggccatcttaggtattttatattgctaaaagaaaggaaatgaagccaaggaagtactgcattagctggtggggaaaggataagaactatgtctattcacaactggaattttgtgagtcttaattctgtaacggttgtaccagtgatgatatagttgtacaaatacaaaactatatgtttagtcacacatttggcaattgcctaacaaatacaactctactataatatataagcatgtatagaaattccgctaggtcaatagagattaatggaggttagaaagatgctacacatttccaatcctgcaatctaaatgatgacatcaatgtaagtgcccagatattccattaagaaaaagagaagagtataaggcggaaaaactagtttttgacttatcaaatattgttgggagtcaataatctgcagaacctaactttacacagtatctgaggaagggttgctggtagggccaaaacagaggaacaaatatctactactagaaaaggtattgtgcctgacctattcacagcccaaattttgcagtcaaactaacttcatacataacaaaggtctaaaatctttaacggcttcagtgtaatctcggtcagtcaactgtgcctgtgtaggtcactctggatcatgaaaagcatcactgacagaaattatcaaatcattttctgttttgatctctggtagtcttctgttccccttaccaaaaatttcactgtgcagcccaccaaagacaagcagaacagcatgctgatcctacaggagacgtgtgcagacgcatccggttcaatggttgtgtatgctcctgtagacatcccagcaatgcaccttgtcatgagtggtggggattcgtcatgcgtcgcccttcttccatcaggttttgccatcctgcctgctgggcctagcatcggcgcagatcacaagatgggcggttcattgctcaccgttgcattccagatacttgccaacagccagcccagtgctaagctcacggtggagtcagtcgagaccgtgagcaaccttatctcctgcaccatcaagaagatcaagacggcgctgcattgcgacgtgtgaacccaacaaggggggacttttggcctagtgggagcggctgtggcgatgagcctgagtcaagaacgaaccgcgacataggaagggacctttgctaggtggcaaggaccggacggggcaggtccttagcacagagcaatggtggtggttcgggtattgactcagcctctcccgcctccgttctctcctgtgactggtgcatgttgaagtgaacctgcattttggacgccatgtagcaggccatctttctttctttttcctttttctttttctttttctttttttagggagaagggagtcatctgtgttttttgttggctggctcagggtgttggtgtttctggtttctagcttttgttacagggagatgtgatacattttgtagaagctccgaattgtcgtgctggtatgtgaggttctgatcataggtctgtgtttgatagtctcgagctatcaacgcctggcaaatgcaaaccttgttatgctaaaatatgttttagatcaatctgattctgaaagctgtttacatgtccc</dnaseqindica>|
| + | <references> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060130.1 RefSeq:Os04g0569100]|
| + | * <ref name="ref1"> |
| − | }}
| + | Wei J, Choi H, Jin P, Wu Y, Yoon J, Lee YS, Quan T, An G. GL2-type homeobox |
| − | [[Category:Genes]] | + | gene Roc4 in rice promotes flowering time preferentially under long days by |
| − | [[Category:Japonica mRNA]]
| + | repressing Ghd7. Plant Sci. 2016 Nov;252:133-143. doi: |
| − | [[Category:Oryza Sativa Japonica Group]] | + | 10.1016/j.plantsci.2016.07.012. Epub 2016 Jul 21. PubMed PMID: 27717449. |
| − | [[Category:Japonica Genes]]
| + | </ref> |
| − | [[Category:Japonica Chromosome 4]] | + | </references> |
| − | [[Category:Chromosome 4]]
| + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
