|
|
| (4 intermediate revisions by one other user not shown) |
| Line 3: |
Line 3: |
| | ==Annotated Information== | | ==Annotated Information== |
| | ===Function=== | | ===Function=== |
| − | expression of an ERDJ3-like
| |
| − | gene (Os05g0156500) that also functions with BiP as a
| |
| − | co-chaperone to assist nascent protein folding was not
| |
| − | different between the wild-type and transgenic seeds.
| |
| − | Stt3a (Os04g0675500) and UDP-glucose transporter
| |
| − | (Os06g0593100), the products of which are involved in a
| |
| − | renewed association with calnexin and calreticulin, and
| |
| − | the ERAD-related Derlin gene (Os03g0852200) were
| |
| − | up-regulated in BiP1 OEmax and BiP1 KD transgenic seeds.
| |
| − | Expression of the cell death marker gene, Hsr203j
| |
| − | (Os01g0155000), was induced in both the over-expression
| |
| − | and suppression lines.
| |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Os05g0156500 (OsERdj3B) encodes a polypeptide with 347
| |
| − | amino acid residues, which contains an N-terminal J-domain,
| |
| − | a zinc finger motif, and a DnaJ C-terminal domain (CTD;
| |
| − | Supplementary Fig. S2 at JXB online).
| |
| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | Please input evolution information here.
| |
| − |
| |
| − | You can also add sub-section(s) at will.
| |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| Line 34: |
Line 15: |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| |
| − | GeneName = Os05g0156500|
| |
| − | Description = Similar to Apobec-1 binding protein 2|
| |
| − | Version = NM_001061232.1 GI:115462194 GeneID:4337860|
| |
| − | Length = 1994 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os05g0156500, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
| |
| − | AP = Chromosome 5:3283758..3285751|
| |
| − | CDS = 3283760..3283831,3284383..3284442,3284539..3284616,3285029..3285100,3285209..3285367<br>|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008398:3283758..3285751
| |
| − | source=RiceChromosome05
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008398:3283758..3285751
| |
| − | source=RiceChromosome05
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>gcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctgctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataa</cdnaseq>|
| |
| − | AA = <aaseq>ANVKYVREGDFLTVDIEKGMQDGQEVSFFEEGEPKIDGEPGDLK FRIRTAPHERFRREGNDLHTTVTISLLQALVGFEKTIKHLDNHMVEIGTKGITKPKEV RKFKGEGMPLYQSNKKGDLYVTFEVLFPKTLTDDQKSKLKSILT</aaseq>|
| |
| − | DNA = <dnaseqindica>3..74#626..685#782..859#1272..1343#1452..1610#gtgcaaatgtgaagtatgtgcgagaaggtgattttttgactgttgatattgagaaaggaatgcaagatgggcaggtacagagcaactgttctgttcactttctagacatttgtgcgatgcgctgtgatttagtgtgtgccttcctccattattttgtcaacattagataagattatatgtactatggttgtaagtgtaccacatgctattgctacttctagatgctaaactgctaaactaataagctgtcatttatgatcagcacttcattgtttactattagaatttgaaaccttcagtcaaactggctgattcatggatcacaacactaatcagtggcttgttaattggtattgtttgctttttttatgttaaagccaatcaatgcttctttttacctggtaattggcaaattactagcagcttttggaatttggcctgatacaggaaagagatcttgatctttcatgtgaactattgaatttatgtggtggcctttaatttcctcaggctactaacatgatcagagacagttgtttgtcatgaacattatattctattcatcactataagttctactttacagtttggatgttgatttggccgcaccattttatatttgcaggaagtttcattctttgaggaaggagagcctaagattgatggtgaacctggagatttgaaggtttgcttagcacctttttctggttggttaaagtttattgtgagggggtgatctgttttactaatatttatcatcaaatgaatgcttcatgagcagtttaggatccgaacagcaccacatgagcgattcagaagagaaggcaatgacctgcacacaactgttacaatctccctggtactgctcacccccgtctgttatgcatgttctaattaactctctttaaaggtgtagttatcctgtgaaaattagcctgatgacaaccttgcgtgaaaaacttggtcacattataaggaccaaagtcccaagatgacaaagaagtttatcatcttatatggataaaaaaaaatccaaatatgtttccggcttttcagccactgtggatgggaggagttccatgtccagccacctcagtaacttgataaaatccaagatctggcaaaacccaaatcttggagtgccaatctagcagtggaaaccatgaaatcccttactactaatcattgtaactaactgtagagcttgggctgttcttttagtttgttcatcactttagcctgtatttcctgaccatcctttggtcctgcagctccaagctctggtcggcttcgagaagaccattaagcatctggacaatcatatggtggaaattggcaccaaggtttaatccaccccccacaccatcaagaattcttgtacactgtagtcattctcattcatcacctgcaatactgcaactgatcatcacaatttcgtcgtgaatatttaggggatcaccaaacccaaggaggttaggaagttcaaaggggaaggaatgccattgtaccagagcaacaagaaaggcgacctatatgtaactttcgaggttttattcccgaaaaccctaaccgacgaccagaagtccaagctgaagagcattctcacataaccgaaggcccaggttttcgcttttatgctgcagctagttcgttctcatttgaggtgggaaggaaaactgcctcaaaaaaggaaattttcccagcttacaagcaccagcagctgccttttctgtgggtgtgattttgcgttggtaattgttagcagttcagcagtttaatttctcttttaccttattttgtttctcatgtcattaacaaccgggtgtagcatttaggaagttggatgatcatgagctgtaccaaaatatttgtattgctggaagaatatattgatggtagaattgtagcttacacttcccaaaaatgtatttactggttgtacaacagtcagcagtaaaattaaatggaatttaagtcagggtcattcgttgtcc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061232.1 RefSeq:Os05g0156500]|
| |
| − | }}
| |
| | [[Category:Genes]] | | [[Category:Genes]] |
| | [[Category:Japonica mRNA]] | | [[Category:Japonica mRNA]] |
