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| − | Please input one-sentence summary here.
| + | The rice gene Os07g0211500 was reported as '''''Rc''''' in 2006<ref name="ref1" /> by researchers from USA. |
| − | ===characteristic=== | + | |
| | + | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os07g0211500 <=> Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C |
| | | | |
| | ===Function=== | | ===Function=== |
| | + | [[File:Os07g0211500-1.png|right|thumb|400px|'''Rc allele phenotypes.''' '' <ref name="ref1" />.'']] |
| | + | * '''''Rc''''' is a domestication-related gene required for red pericarp in rice (Oryza sativa). |
| | | | |
| | + | * '''''Rc''''' encodes a basic helix-loop-helix (bHLH) protein that was fine-mapped to an 18.5-kb region on rice chromosome 7 using a cross between Oryza rufipogon (red pericarp) and O. sativa cv Jefferson (white pericarp). |
| | | | |
| − | ===Expression===
| + | * '''''Rc''''' is a positive regulator of proanthocyanidin. |
| − | | |
| − | | |
| − | ===Nucleotide Polymorphisms===
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| − | | |
| − | ===Allele Distribution===
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| | | | |
| | | | |
| − | ===Haplotype Diversity=== | + | ===Expression === |
| − | | + | * '''''Rc''''' gene was expressed in both red- and white-grained rice but that a shortened transcript was present in white varieties. |
| − | | |
| − | ===Recombination===
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| | | | |
| | ===Evolution=== | | ===Evolution=== |
| − | | + | [[File:Os07g0211500-2.png|center|thumb|400px|'''Figure 5. Phylogenetic Analysis of Rc and Other bHLH Proteins.''' '' <ref name="ref1" />.'']] |
| − | | + | You can also add sub-section(s) at will. |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | | + | * Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York 14953-1901 |
| | + | * Department of Plant Biology, Cornell University, Ithaca, New York 14853 |
| | ==References== | | ==References== |
| | <references> | | <references> |
| − | <ref name="ref1">Sasaki A, Ashikari M, Ueguchi-Tanaka M, Itoh H, Nishimura A, et al. (2002) Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416: 701-702.</ref> | + | * <ref name="ref1"> |
| | + | Sweeney M T, Thomson M J, Pfeil B E, et al. Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice[J]. The Plant Cell, 2006, 18(2): 283-294. |
| | + | </ref> |
| | </references> | | </references> |
| | + | |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 07]] |
| − | GeneName = Os07g0211500|
| |
| − | Description = Pericarp Color；red grain color gene
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| − | Length = 833bp|
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| − | Definition = Oryza sativa (japonica cultivar-group) cultivar H75 brown pericarp
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| − | and seed coat (Rc) gene, complete cds.|
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| − | Source = Oryza sativa Japonica Group (Japanese rice)
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.|
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| − | Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
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| − | source=RiceChromosome07
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008397:19856181..19857859
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| − | source=RiceChromosome07
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq> 1 atggccggcg gcgaggcgca tgcggcgctg caggcggtgg cgcagagcct ccggtggacc
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| − | 61 tacagcctcc tctggcagct ctgcccccac caagggagctcg
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| − | 421 ctggtgtggg gggaggggca ctacaacggc gccgtcaaga cgcggaagtc gacggtgatg
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| − | 481 cagccgccgc cggcggagga ggaggacgac gccgaccacg cggcgcgcca ccggagccgg
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| − | 541 cagctgaggg agctctacga ctggctgcag caggccgggg agaactccag cggcggcgtg
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| − | 601 cagacgtcgt cgacgacggc gagccggcgg ccgggggcgg ctctgtcgcc ggaggacctg
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| − | 661 acggagacgg agtggttctt cctcatgtcg gcatcctact ccttccctcc cggcatcgggtta
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| − | 3421 cctggaaggg catttgcaag gagaggccat gtatggctca ctggagcaaa tgaagttgac
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| − | 3481 agcaaagtat tcctaagagc aattcttgcc aagacagttgtg tgcattcctg ttgtcgatgg cgtcctggaa attggaacta cggaaaaggtggaggaag atatgggcct gattcagtat gcaaggggca
| |
| − | 4201 tcttcatgga tcaacatggc atccacatga agcctaccct ctcacagcac tcaacatcca
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| − | 4261 acccagtcac ccactgtact catcagcatc caatccaggt tcagatgcaa ctaggtatca
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| − | 4321 ccagccaaac aaagtttgat tattcagatg agctcaatgc agatgaggag aatgatgaca
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| − | 4381 cagaagaaga gggcatgtca ggttcagaca ctaacaacac tgacactgaa aggaattcag
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| − | 4441 gccagctgca acttcaaatg caagaccaac tgaacatggt gagcaatgac caccagacaa
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| − | 4501 taccaaataa tgcagtttcc agtgagctaa tgcagtgtga gatgtcagaa gtggtaagag
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| − | 4561 atggctgctc aaataatatt ttagaggatg aaatccaaat gctgatggat tgccaaaaca
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| − | 4621 gtaattgtca gttaaatttg caagggccag atgagccttg tcactcttgg cattttctct
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| − | 4681 gcgaggagtt acaaaatgat taccagccagctactgaaga tcaagtggca tcacctgaaa atacccatta
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| − | 4921 cccaaaaaca ctcatgacaa tcctacatta caacacgctg cgacagcaag agatgaacat
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| − | 4981 caagaactac ttgccagttt cagagaaatc atcattctcc agatggacta ctcctgaagg
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| − | 5041 aagtgatgac aacaagacca tgatcagtcc aggcaccaca cagagaatgc tcaagagcat
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| − | 5101 cctgatgatt gttcccagta gtcactgcag ttacagggga gcagaaacac ctgaatcaag
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| − | 5161 gggcgggaaa ggcgcaagtg gaacgcgaaa agtcggtgcc atccaaggtg atttcagtgc
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| − | 5221 caaccatgtg ctgaaagaga ggagaagaag agagaagctc aatgagaagt tcataattct
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| − | 5281 gcgatctttg gtacctttca tgacaaagatggac aaggcgtcga tactaggcga
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| − | 6001 cacgatcgag tacgtgaagc agctaaggaa ccgcatacaa gagctcgagt cgtcgtcgtc
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| − | 6061 gtcgtcacga gcagccgccc gggcgccatc ggcggcggcc gccgggaggc ggaggaagag
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| − | 6121 atccgccgcc gccgccactg ccacggcggc ggaagggatg agcagcagca atggccgcaa
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| − | 6181 tggcggcgag gcggcggagg tggtgcaggt gtccatcatc gagagcgacg cgctgctgga
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| − | 6241 gctccggtgc ggttgcggcg gcggcggcgg cggtgtggtg ctgctccggg tgatgcaggc
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| − | 6301 gatgcaggag ctccagctgg aggtcaccgc cgtccaggcc tcgtgcgccg gtggcgagct
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| − | 6361 gctcgccgag ctgcgcgcca aggtcgtcgt tatgatcctg atctgcatga aaatgcaaat
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| − | 6421 gcaaatgcaa atgcagaatt aa</cdnaseq>|
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| − | AA = <aaseq>MAGGEAHAALQAVAQSLRWTYSLLWQLCPHQGSSLVWGEGHYNG
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| − | AVKTRKSTVMQPPPAEEEDDADHAARHRSRQLRELYDWLQQAGENSSGGVQTSSTTAS
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| − | RRPGAALSPEDLTETEWFFLMSASYSFPPGIGLPGRAFARRGHVWLTGANEVDSKVFL
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| − | RAILAKTVVCIPVVDGVLEIGTTEKVEEDMGLIQYARGIFMDQHGIHMKPTLSQHSTS
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| − | NPVTHCTHQHPIQVQMQLGITSQTKFDYSDELNADEENDDTEEEGMSGSDTNNTDTER
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| − | NSGQLQLQMQDQLNMVSNDHQTIPNNAVSSELMQCEMSEVVRDGCSNNILEDEIQMLM
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| − | DCQNSNCQLNLQGPDEPCHSWHFLCEELQNDYQPATEDQVASPENTHYPKTLMTILHY
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| − | NTLRQQEMNIKNYLPVSEKSSFSRWTTPEGSDDNKTMISPGTTQRMLKSILMIVPSSH
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| − | CSYRGAETPESRGGKGASGTRKVGAIQGDFSANHVLKERRRREKLNEKFIILRSLVPF
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| − | MTKMDKASILGDTIEYVKQLRNRIQELESSSSSSRAAARAPSAAAAGRRRKRSAAAAT
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| − | ATAAEGMSSSNGRNGGEAAEVVQVSIIESDALLELRCGCGGGGGGVVLLRVMQAMQEL
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| − | QLEVTAVQASCAGGELLAELRAKVVVMILICMKMQMQMQMQN"</aaseq>|
| |
| − | DNA = <dnaseqindica>1321..1386#668..1152#450..531# 1 atggccggcg gcgaggcgca tgcggcgctg caggcggtgg cgcagagcct ccggtggacc
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| − | 61 tacagcctcc tctggcagct ctgcccccac caagggtacc taccctacct acctacgaca
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| − | 121 cgatgcacag tgttcatcca tggccggcca tggcggatcg tcgtcgttgt cgatgatcat
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| − | 181 cgaaggaagc tagaggatat ggctcaatac tttgataata tatatactga tctctccgta
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| − | 241 caacaaaaat ataaaaattc tagctagtat cgaatgagac atatgctatg ctagtactac
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| − | 301 gaatctaaaa agatgtacat attttgattc gtattattag gatatatcac gagtttttat
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| − | 361 attttgagac ggatgtaata attctgaatt tagttgtgat ccatggcatg caggagctcg
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| − | 421 ctggtgtggg gggaggggca ctacaacggc gccgtcaaga cgcggaagtc gacggtgatg
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| − | 481 cagccgccgc cggcggagga ggaggacgac gccgaccacg cggcgcgcca ccggagccgg
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| − | 541 cagctgaggg agctctacga ctggctgcag caggccgggg agaactccag cggcggcgtg
| |
| − | 601 cagacgtcgt cgacgacggc gagccggcgg ccgggggcgg ctctgtcgcc ggaggacctg
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| − | 661 acggagacgg agtggttctt cctcatgtcg gcatcctact ccttccctcc cggcatcggg
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| − | 721 tatataataa aaaatataga tataaatatt taagcatgca tgcataaatt aaaccacact
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| − | 781 tcttgttacg tgttcttggc aaaatgatga acaattacca ctaattaatt ggagccagaa
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| − | 841 accctaaaga tttacccacc tggttaatta atcggtgtgt tgatccacgc atgcatgcat
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| − | 901 gcagaaaatc aagatcagga tagctccttt tcttttgcag gttaattagc tagatcttca
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| − | 961 cgtataatta gctagctaga ttttaaaata taatttattc aatttgattt atgattttta
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| − | 1021 ttttttattt caaatagata caactgtata caaaatttta ttttggtaca tacctccgat
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| − | 1081 ccaactacat cagaggtaaa aaaaaaatta aaccgttgga attgattaga acaagatcgt
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| − | 1141 gcggtcaaat tatatcataa ctaacttttc tgattctcta aagcatagag atgtatatat
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| − | 1201 acatcgtatt attaggctct atatttcctg attaacacta gatgcatata taattttgat
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| − | 1261 agtcaaaata tacttttgat aggctctaaa gaaaaactta ataacatgta ctccctccat
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| − | 1321 atacttttga tagtcatatt tcatcttgac acacagatca agtataagta attctactta
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| − | 1381 tcatccattt aaacacgcta ctagttattc ctcataaaca agcgattcat taatatttac
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| − | 1441 atttctcgat gcttgtgtag ccaatattgt gtggaagaat ggaatgtcat taagaggata
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| − | 1501 ggttgttgga ttgaaatatg cctatcaaaa ataaattttt agatttgaaa atatgcctat
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| − | 1561 caaaagtaga tggagggagt attaattaat gtgaatttcc aatcctactg ttgtgatatt
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| − | 1621 aggctttgta ccttcttgtc caggaggtat atatatggct cttttaagga tgggagaaaa
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| − | 1681 tatcatcttt aatacaacta tatatggctt ttgtttgata aatacaactt ttattttgta
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| − | 1741 tgaatacaaa tatattgata aatatccacc attataatcc taacccatta ggatcatatg
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| − | 1801 gtgtatattt ttttaactat ttgtttttta taaattaata ttaagagatc acaataaaaa
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| − | 1861 tatagtatta tgaaagtact cttaacaaca tatccaatga taaaattatt attattacaa
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| − | 1921 aatatagtgg tcaaattgta tagaattcaa tagcctgatt ttatgacgtc aagtaaatta
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| − | 1981 aataaagaat gaaggtagtg ctagagtgat caaacaatat ctctcctaaa atatgtccta
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| − | 2041 taagttttac tccataaatc caagggtcaa aagttgttgg gttatttttt tagataataa
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| − | 2101 catactaccc cttttcaaaa tgtatgattc tattgacttt ttgcacaaca tttaaccatt
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| − | 2161 tgtcatatta aaaattagta taaacatcta aaaatataag ttacaattat attttatttg
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| − | 2221 atgataaaac aactcacaac aaaataaata atatttatat aatctttttg gaataaaacg
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| − | 2281 aatgatcaaa cattattcaa aaagtcaatg gtatagtacg ttttgaaatt gatagactat
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| − | 2341 gagagcaaaa ttttgagata acatggaaaa ttatcctctt agacattgca ctgtgtaata
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| − | 2401 attaataata atgaatgaaa ggctaagact tttcttccac cttatataag tggttgaata
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| − | 2461 tatagcaatc acatcattac atgattttgt aaccaaccgt ctctatagct ccgatacagt
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| − | 2521 gctagtttca catcgtaata attaaagagt ataataataa atcgaggtgt acttctcatc
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| − | 2581 gatgaagtga tgtgccgctt agctaaatta aactcgtatg cgaaaaatca gtatatgtcc
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| − | 2641 ggttaatttc taagagagag attgagagag aataattgcg cccctccaaa tccccctctt
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| − | 2701 ggacgttagg gagctatata gacggtattg ctaagtgcga tgtgtacata acgtacctgt
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| − | 2761 cgtaggaaca tttctcatcc aaattaagta gtaatgcatg gcatgaaatc catttttgta
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| − | 2821 ttttgcatgg caaagaatga caacaaggaa tacactagct agccctgccc tttttcaatt
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| − | 2881 taatttaaca tcaaacttag ttattgtatt tcttttgtca gaatagcatg cattgcatac
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| − | 2941 tctttaaaaa taattaatta gtgtatttta ctagtcttac aaaagtatca agagagacaa
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| − | 3001 ctaattatag ttgggagaca ccaaacttgt ttttaataat gacaattaaa accctacctc
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| − | 3061 tacatccaac atagacgtac atagtccgaa ggcgccaaat atttgtacat ttagctacca
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| − | 3121 gatttcagta cgagttctca cattataatt ttgatttttt tatttttttt ataaacaatc
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| − | 3181 tggtaccctt ttatgtctgg aaggaaaaaa aaaatctaaa ttgcaacatt ttagtcggtg
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| − | 3241 agaatggtac tctgtcctag ctactttcta cacatgagag agagagagag agagagagag
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| − | 3301 agagccttta attgcccttg cccatgcatc tttctttgca cacatgtatg cttttcacat
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| − | 3361 tgtcatgagg agagaacttg ttaagttgca cacatgtgtg ctttgcatgt cttcaggtta
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| − | 3421 cctggaaggg catttgcaag gagaggccat gtatggctca ctggagcaaa tgaagttgac
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| − | 3481 agcaaagtat tcctaagagc aattcttgcc aaggttcagc catcaccttc tcttacctat
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| − | 3541 ttttcactct gaatgccaac agtgctttgc acattgtagt ctgtttgcag actgcaaatg
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| − | 3601 atgaccataa tcagatcaga aaataaaata atattatata ctttttgagc cagctagcaa
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| − | 3661 gaatatgtaa caataattct cctttttttt tcttgttctt ttccctgatg tggtgcataa
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| − | 3721 caaataacca aactgatgaa tggcagagtg ctggtatcca ggtatttgcc tctaaaagta
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| − | 3781 gctacacgtt tactatgaaa ttttgtggct tttgttcatc tttggatgca gtggccatta
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| − | 3841 tctaaaaact atgaatttcc agactgcagt ttttatctaa ttttgtgact ttgtacatca
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| − | 3901 gacagttgtg tgcattcctg ttgtcgatgg cgtcctggaa attggaacta cggaaaaggt
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| − | 3961 gatttcgtat attatcagct gacaatctaa ttatatgggc catataatta agtataaatc
| |
| − | 4021 aaaatacctc ataatatatt ataaagtatc taatgtgatt atgtgaatat tggctatttc
| |
| − | 4081 aatgtaattt gatatatgaa actgataatc ctctgaaact ccgtaaggat caaactaatc
| |
| − | 4141 aaaatgtata tattttcaag gtggaggaag atatgggcct gattcagtat gcaaggggca
| |
| − | 4201 tcttcatgga tcaacatggc atccacatga agcctaccct ctcacagcac tcaacatcca
| |
| − | 4261 acccagtcac ccactgtact catcagcatc caatccaggt tcagatgcaa ctaggtatca
| |
| − | 4321 ccagccaaac aaagtttgat tattcagatg agctcaatgc agatgaggag aatgatgaca
| |
| − | 4381 cagaagaaga gggcatgtca ggttcagaca ctaacaacac tgacactgaa aggaattcag
| |
| − | 4441 gccagctgca acttcaaatg caagaccaac tgaacatggt gagcaatgac caccagacaa
| |
| − | 4501 taccaaataa tgcagtttcc agtgagctaa tgcagtgtga gatgtcagaa gtggtaagag
| |
| − | 4561 atggctgctc aaataatatt ttagaggatg aaatccaaat gctgatggat tgccaaaaca
| |
| − | 4621 gtaattgtca gttaaatttg caagggccag atgagccttg tcactcttgg cattttctct
| |
| − | 4681 gcgaggagtt acaaaatgat taccagccag gtattacatt tgagaagata atccttcaaa
| |
| − | 4741 agcacccttg ttccaaaaat atatatttgt actcttcaca caagcactgc catttttttt
| |
| − | 4801 cttttttgca tacatcctca attcttgcat ttcttttcca tatatttgat acaactgtct
| |
| − | 4861 ccatttccct tctgtcacag ctactgaaga tcaagtggca tcacctgaaa atacccatta
| |
| − | 4921 cccaaaaaca ctcatgacaa tcctacatta caacacgctg cgacagcaag agatgaacat
| |
| − | 4981 caagaactac ttgccagttt cagagaaatc atcattctcc agatggacta ctcctgaagg
| |
| − | 5041 aagtgatgac aacaagacca tgatcagtcc aggcaccaca cagagaatgc tcaagagcat
| |
| − | 5101 cctgatgatt gttcccagta gtcactgcag ttacagggga gcagaaacac ctgaatcaag
| |
| − | 5161 gggcgggaaa ggcgcaagtg gaacgcgaaa agtcggtgcc atccaaggtg atttcagtgc
| |
| − | 5221 caaccatgtg ctgaaagaga ggagaagaag agagaagctc aatgagaagt tcataattct
| |
| − | 5281 gcgatctttg gtacctttca tgacaaaggt aattaagtac tccctctatt tctataaagc
| |
| − | 5341 cgtatttgac tagttatctt atttagaaag tatgtgcaaa tatgtaaaat ataagtcata
| |
| − | 5401 cttaaagaac ttttaatgtt attaaataat aagtcacacc aaaaataaaa catatatatt
| |
| − | 5461 tttaataaga caaatgatta aatgtatata taaaaattaa tagcgtcaca tattttaaaa
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| − | 5521 tagaggggta tttaagtacc cacaggatca tcaaaattca gttatctttt cttaagcctc
| |
| − | 5581 taacgaacat tggaagatcc tcactaatgg cagcatgaat ctagggttca ctatttcgga
| |
| − | 5641 atgcaaaata tgttttaccg ggcatccgat ttttaaaaaa ttcagaatga agaaaattga
| |
| − | 5701 atctttttta tggatttgaa taaatcttga taaattcgaa aaaatttccg aacttttggc
| |
| − | 5761 cagaagtgaa tcctacccgt atccaccggt aataaaccta aatttttggg agtaatgaat
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| − | 5821 taatgttata tataatccat gaattatata gttccaaact actccgtaac aaattttcag
| |
| − | 5881 gagtagtgaa attaatatta ttacaatctc agaaaaaaat ggcagaaaca attaatctgt
| |
| − | 5941 tttcaattat taattaattt gtttttgtgt ccagatggac aaggcgtcga tactaggcga
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| − | 6001 cacgatcgag tacgtgaagc agctaaggaa ccgcatacaa gagctcgagt cgtcgtcgtc
| |
| − | 6061 gtcgtcacga gcagccgccc gggcgccatc ggcggcggcc gccgggaggc ggaggaagag
| |
| − | 6121 atccgccgcc gccgccactg ccacggcggc ggaagggatg agcagcagca atggccgcaa
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| − | 6181 tggcggcgag gcggcggagg tggtgcaggt gtccatcatc gagagcgacg cgctgctgga
| |
| − | 6241 gctccggtgc ggttgcggcg gcggcggcgg cggtgtggtg ctgctccggg tgatgcaggc
| |
| − | 6301 gatgcaggag ctccagctgg aggtcaccgc cgtccaggcc tcgtgcgccg gtggcgagct
| |
| − | 6361 gctcgccgag ctgcgcgcca aggtcgtcgt tatgatcctg atctgcatga aaatgcaaat
| |
| − | 6421 gcaaatgcaa atgcagaatt aa
| |
| − | </dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/78057269]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 7]] | |
| − | [[Category:Chromosome 7]]
| |
