Difference between revisions of "Os07g0211500"

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Please input one-sentence summary here.
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The rice gene Os07g0211500 was reported as '''''Rc''''' in 2006<ref name="ref1" /> by researchers from USA.
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===characteristic===
 
  
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===Mutation===
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==Annotated Information==
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[[File:clip_image002.jpg]]
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===Gene Symbol===
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*'''''Os07g0211500 <=> Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
  
 
===Function===
 
===Function===
 +
[[File:Os07g0211500-1.png|right|thumb|400px|'''Rc allele phenotypes.''' '' <ref name="ref1" />.'']]
 +
* '''''Rc''''' is a domestication-related gene required for red pericarp in rice (Oryza sativa).
  
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* '''''Rc''''' encodes a basic helix-loop-helix (bHLH) protein that was fine-mapped to an 18.5-kb region on rice chromosome 7 using a cross between Oryza rufipogon (red pericarp) and O. sativa cv Jefferson (white pericarp).
  
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===Expression===
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* '''''Rc''''' is a positive regulator of proanthocyanidin.
  
  
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===Nucleotide Polymorphisms===
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===Expression ===
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* '''''Rc''''' gene was expressed in both red- and white-grained rice but that a shortened transcript was present in white varieties.
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===Allele Distribution===
 
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===Haplotype Diversity===
 
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===Recombination===
 
  
 
===Evolution===
 
===Evolution===
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[[File:Os07g0211500-2.png|center|thumb|400px|'''Figure 5. Phylogenetic Analysis of Rc and Other bHLH Proteins.''' '' <ref name="ref1" />.'']]
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You can also add sub-section(s) at will.
 
==Labs working on this gene==
 
==Labs working on this gene==
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*Department of Biology, Washington University in St. Louis, St. Louis, Missouri, USA
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* Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York 14953-1901
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*Plant Science Department, South Dakota State University, Brookings, South Dakota 57007, †Biosciences Research Laboratory, U.S.
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* Department of Plant Biology, Cornell University, Ithaca, New York 14853
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*Department of Agriculture–Agricultural Research Service, Fargo, North Dakota 58105, ‡Northern Crop Science Laboratory, U.S.
 
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*Department of Agriculture–Agricultural Research Service, Fargo, North Dakota 58102, §National Institute of Agrobiologica
 
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*Sciences, Tsukuba, Ibaraki 305-8602, Japan
 
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*Agricultural College, Yangzhou University, Yangzhou 225008, China
 
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*Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York 14953-1901
 
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*Department of Plant Biology, Cornell University, Ithaca, New York 14853
 
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*Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York, United States of America
 
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*International Rice Research Institute, Los Ban˜ os, Philippines*
 
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*Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development, Bogor, Indonesia
 
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*Department of Agronomy, Chungbuk National University, Chongju, Republic of Korea
 
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*National Institute of Agricultural Biotechnology, Suwon, Republic of Korea
 
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*Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York, United States of America
 
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*Plant Genome Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan
 
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*QTL Genomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan
 
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*Genetic Diversity Department, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan
 
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*Department of Biological Science and Technology, Tokyo University of Science, Noda, Chiba 278-8510, Japan
 
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*Research Institute for Biresources, Okayama University, Kurashiki, Okayama 710-0046, Japan
 
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*National Agricultural Research Center for Kyushu Okinawa Region, National Agriculture and Bio-oriented Research Organization, Nishigoshi, Kikuchi, Kumamoto 861-1192, Japan
 
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*National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan
 
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*Plant Breeding Laboratory, Graduate School of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589, Japan
 
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==References==
 
==References==
 
<references>
 
<references>
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<ref name="ref1">Xing-You Gu; Michael E. Foley; David P. Horvath; James V. Anderson; Jiuhuan Feng; Lihua Zhang; Chase R. Mowry; Heng Ye; Jeffery C. Suttle; Koh-ichi Kadowaki; Zhongxiang Chen.  Association Between Seed Dormancy and Pericarp Color Is Controlled by a Pleiotropic Gene That Regulates Abscisic Acid and Flavonoid Synthesis in Weedy Red Rice;Genetics, 2011, 189(4): 1515-1524.</ref>
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* <ref name="ref1">
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<ref name="ref2">B. L. GROSS, F. T. STEFFEN, K. M. OLSEN The molecular basis of white pericarps in African domesticated rice: novel mutations at the Rc gene.Journal of Evolutionary Biology, 2010, 23(12): 2747-2753.</ref>
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Sweeney M T, Thomson M J, Pfeil B E, et al. Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice[J]. The Plant Cell, 2006, 18(2): 283-294.
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<ref name="ref3">Saeko Konishi, Kaworu Ebana and Takeshi Izawa Inference of the japonica Rice Domestication Process from the Distribution of Six Functional Nucleotide Polymorphisms of Domestication-Related Genes in Various Landraces and Modern Cultivars Plant and Cell Physiology, 2008, 49(9): 1283-1293.</ref>
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</ref>
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<ref name="ref4">Megan T. Sweeney; Michael J. Thomson; Yong Gu Cho; Yong Jin Park; Scott H. Williamson; Carlos D. Bustamante; Susan R. McCouch Global Dissemination of a Single Mutation Conferring White Pericarp in Rice PLoS Genetics, 2007, 3(8): 1418-1424.</ref>
 
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<ref name="ref5">Tsutomu Furukawa, Masahiko Maekawa, Tomoyuki Oki, Ikuo Suda, Shigeru Iida, Hiroaki Shimada, Itsuro Takamure, Koh-ichi Kadowaki The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp The Plant Journal, 2006, 49(1): 91-102.</ref>
 
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<ref name="ref6">Megan T. Sweeney, Michael J. Thomson, Bernard E. Pfeil, Susan McCouch Caught Red-Handed: Rc Encodes a Basic Helix-Loop-Helix Protein Conditioning Red Pericarp in Rice The Plant Cell, 2006, 18(2): 283-294.</ref>
 
 
</references>
 
</references>
 +
  
 
==Structured Information==
 
==Structured Information==
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{{JaponicaGene|
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 07]]
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GeneName = Os07g0211500|
 
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Description = Pericarp Color;red grain color gene|
 
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Version = DQ204735.1  GI:78057266|
 
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Length = 833bp|
 
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Definition = Oryza sativa (japonica cultivar-group) cultivar H75 brown pericarp
 
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            and seed coat (Rc) gene, complete cds.|
 
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Source = Oryza sativa Japonica Group (Japanese rice)
 
−
 
 
−
  ORGANISM  Oryza sativa Japonica Group
 
−
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
−
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
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            clade; Ehrhartoideae; Oryzeae; Oryza.|
 
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Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
 
−
AP = Chromosome 7|
 
−
source=RiceChromosome07
 
−
preset=GeneLocation
 
−
</gbrowseImage1>|
 
−
GSID = <gbrowseImage2>
 
−
name=NC_008397:19856181..19857859
 
−
source=RiceChromosome07
 
−
preset=GeneLocation
 
−
</gbrowseImage2>|
 
−
CDNA = <cdnaseq> 1 atggccggcg gcgaggcgca tgcggcgctg caggcggtgg cgcagagcct ccggtggacc
 
−
      61 tacagcctcc tctggcagct ctgcccccac caagggagctcg
 
−
      421 ctggtgtggg gggaggggca ctacaacggc gccgtcaaga cgcggaagtc gacggtgatg
 
−
      481 cagccgccgc cggcggagga ggaggacgac gccgaccacg cggcgcgcca ccggagccgg
 
−
      541 cagctgaggg agctctacga ctggctgcag caggccgggg agaactccag cggcggcgtg
 
−
      601 cagacgtcgt cgacgacggc gagccggcgg ccgggggcgg ctctgtcgcc ggaggacctg
 
−
      661 acggagacgg agtggttctt cctcatgtcg gcatcctact ccttccctcc cggcatcgggtta
 
−
    3421 cctggaaggg catttgcaag gagaggccat gtatggctca ctggagcaaa tgaagttgac
 
−
    3481 agcaaagtat tcctaagagc aattcttgcc aagacagttgtg tgcattcctg ttgtcgatgg cgtcctggaa attggaacta cggaaaaggtggaggaag atatgggcct gattcagtat gcaaggggca
 
−
    4201 tcttcatgga tcaacatggc atccacatga agcctaccct ctcacagcac tcaacatcca
 
−
    4261 acccagtcac ccactgtact catcagcatc caatccaggt tcagatgcaa ctaggtatca
 
−
    4321 ccagccaaac aaagtttgat tattcagatg agctcaatgc agatgaggag aatgatgaca
 
−
    4381 cagaagaaga gggcatgtca ggttcagaca ctaacaacac tgacactgaa aggaattcag
 
−
    4441 gccagctgca acttcaaatg caagaccaac tgaacatggt gagcaatgac caccagacaa
 
−
    4501 taccaaataa tgcagtttcc agtgagctaa tgcagtgtga gatgtcagaa gtggtaagag
 
−
    4561 atggctgctc aaataatatt ttagaggatg aaatccaaat gctgatggat tgccaaaaca
 
−
    4621 gtaattgtca gttaaatttg caagggccag atgagccttg tcactcttgg cattttctct
 
−
    4681 gcgaggagtt acaaaatgat taccagccagctactgaaga tcaagtggca tcacctgaaa atacccatta
 
−
    4921 cccaaaaaca ctcatgacaa tcctacatta caacacgctg cgacagcaag agatgaacat
 
−
    4981 caagaactac ttgccagttt cagagaaatc atcattctcc agatggacta ctcctgaagg
 
−
    5041 aagtgatgac aacaagacca tgatcagtcc aggcaccaca cagagaatgc tcaagagcat
 
−
    5101 cctgatgatt gttcccagta gtcactgcag ttacagggga gcagaaacac ctgaatcaag
 
−
    5161 gggcgggaaa ggcgcaagtg gaacgcgaaa agtcggtgcc atccaaggtg atttcagtgc
 
−
    5221 caaccatgtg ctgaaagaga ggagaagaag agagaagctc aatgagaagt tcataattct
 
−
    5281 gcgatctttg gtacctttca tgacaaagatggac aaggcgtcga tactaggcga
 
−
    6001 cacgatcgag tacgtgaagc agctaaggaa ccgcatacaa gagctcgagt cgtcgtcgtc
 
−
    6061 gtcgtcacga gcagccgccc gggcgccatc ggcggcggcc gccgggaggc ggaggaagag
 
−
    6121 atccgccgcc gccgccactg ccacggcggc ggaagggatg agcagcagca atggccgcaa
 
−
    6181 tggcggcgag gcggcggagg tggtgcaggt gtccatcatc gagagcgacg cgctgctgga
 
−
    6241 gctccggtgc ggttgcggcg gcggcggcgg cggtgtggtg ctgctccggg tgatgcaggc
 
−
    6301 gatgcaggag ctccagctgg aggtcaccgc cgtccaggcc tcgtgcgccg gtggcgagct
 
−
    6361 gctcgccgag ctgcgcgcca aggtcgtcgt tatgatcctg atctgcatga aaatgcaaat
 
−
    6421 gcaaatgcaa atgcagaatt aa</cdnaseq>|
 
−
AA = <aaseq>MAGGEAHAALQAVAQSLRWTYSLLWQLCPHQGSSLVWGEGHYNG
 
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                    AVKTRKSTVMQPPPAEEEDDADHAARHRSRQLRELYDWLQQAGENSSGGVQTSSTTAS
 
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                    RRPGAALSPEDLTETEWFFLMSASYSFPPGIGLPGRAFARRGHVWLTGANEVDSKVFL
 
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                    RAILAKTVVCIPVVDGVLEIGTTEKVEEDMGLIQYARGIFMDQHGIHMKPTLSQHSTS
 
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                    NPVTHCTHQHPIQVQMQLGITSQTKFDYSDELNADEENDDTEEEGMSGSDTNNTDTER
 
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                    NSGQLQLQMQDQLNMVSNDHQTIPNNAVSSELMQCEMSEVVRDGCSNNILEDEIQMLM
 
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                    DCQNSNCQLNLQGPDEPCHSWHFLCEELQNDYQPATEDQVASPENTHYPKTLMTILHY
 
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                    NTLRQQEMNIKNYLPVSEKSSFSRWTTPEGSDDNKTMISPGTTQRMLKSILMIVPSSH
 
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                    CSYRGAETPESRGGKGASGTRKVGAIQGDFSANHVLKERRRREKLNEKFIILRSLVPF
 
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                    MTKMDKASILGDTIEYVKQLRNRIQELESSSSSSRAAARAPSAAAAGRRRKRSAAAAT
 
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                    ATAAEGMSSSNGRNGGEAAEVVQVSIIESDALLELRCGCGGGGGGVVLLRVMQAMQEL
 
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                    QLEVTAVQASCAGGELLAELRAKVVVMILICMKMQMQMQMQN"</aaseq>|
 
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DNA = <dnaseqindica>1321..1386#668..1152#450..531# 1 atggccggcg gcgaggcgca tgcggcgctg caggcggtgg cgcagagcct ccggtggacc
 
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      61 tacagcctcc tctggcagct ctgcccccac caagggtacc taccctacct acctacgaca
 
−
      121 cgatgcacag tgttcatcca tggccggcca tggcggatcg tcgtcgttgt cgatgatcat
 
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      181 cgaaggaagc tagaggatat ggctcaatac tttgataata tatatactga tctctccgta
 
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      241 caacaaaaat ataaaaattc tagctagtat cgaatgagac atatgctatg ctagtactac
 
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      301 gaatctaaaa agatgtacat attttgattc gtattattag gatatatcac gagtttttat
 
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      361 attttgagac ggatgtaata attctgaatt tagttgtgat ccatggcatg caggagctcg
 
−
      421 ctggtgtggg gggaggggca ctacaacggc gccgtcaaga cgcggaagtc gacggtgatg
 
−
      481 cagccgccgc cggcggagga ggaggacgac gccgaccacg cggcgcgcca ccggagccgg
 
−
      541 cagctgaggg agctctacga ctggctgcag caggccgggg agaactccag cggcggcgtg
 
−
      601 cagacgtcgt cgacgacggc gagccggcgg ccgggggcgg ctctgtcgcc ggaggacctg
 
−
      661 acggagacgg agtggttctt cctcatgtcg gcatcctact ccttccctcc cggcatcggg
 
−
      721 tatataataa aaaatataga tataaatatt taagcatgca tgcataaatt aaaccacact
 
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      781 tcttgttacg tgttcttggc aaaatgatga acaattacca ctaattaatt ggagccagaa
 
−
      841 accctaaaga tttacccacc tggttaatta atcggtgtgt tgatccacgc atgcatgcat
 
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      901 gcagaaaatc aagatcagga tagctccttt tcttttgcag gttaattagc tagatcttca
 
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      961 cgtataatta gctagctaga ttttaaaata taatttattc aatttgattt atgattttta
 
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    1021 ttttttattt caaatagata caactgtata caaaatttta ttttggtaca tacctccgat
 
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    1081 ccaactacat cagaggtaaa aaaaaaatta aaccgttgga attgattaga acaagatcgt
 
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    1141 gcggtcaaat tatatcataa ctaacttttc tgattctcta aagcatagag atgtatatat
 
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    1201 acatcgtatt attaggctct atatttcctg attaacacta gatgcatata taattttgat
 
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    1261 agtcaaaata tacttttgat aggctctaaa gaaaaactta ataacatgta ctccctccat
 
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    1321 atacttttga tagtcatatt tcatcttgac acacagatca agtataagta attctactta
 
−
    1381 tcatccattt aaacacgcta ctagttattc ctcataaaca agcgattcat taatatttac
 
−
    1441 atttctcgat gcttgtgtag ccaatattgt gtggaagaat ggaatgtcat taagaggata
 
−
    1501 ggttgttgga ttgaaatatg cctatcaaaa ataaattttt agatttgaaa atatgcctat
 
−
    1561 caaaagtaga tggagggagt attaattaat gtgaatttcc aatcctactg ttgtgatatt
 
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    1621 aggctttgta ccttcttgtc caggaggtat atatatggct cttttaagga tgggagaaaa
 
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    1681 tatcatcttt aatacaacta tatatggctt ttgtttgata aatacaactt ttattttgta
 
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    1741 tgaatacaaa tatattgata aatatccacc attataatcc taacccatta ggatcatatg
 
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    1801 gtgtatattt ttttaactat ttgtttttta taaattaata ttaagagatc acaataaaaa
 
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    1861 tatagtatta tgaaagtact cttaacaaca tatccaatga taaaattatt attattacaa
 
−
    1921 aatatagtgg tcaaattgta tagaattcaa tagcctgatt ttatgacgtc aagtaaatta
 
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    1981 aataaagaat gaaggtagtg ctagagtgat caaacaatat ctctcctaaa atatgtccta
 
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    2041 taagttttac tccataaatc caagggtcaa aagttgttgg gttatttttt tagataataa
 
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    2101 catactaccc cttttcaaaa tgtatgattc tattgacttt ttgcacaaca tttaaccatt
 
−
    2161 tgtcatatta aaaattagta taaacatcta aaaatataag ttacaattat attttatttg
 
−
    2221 atgataaaac aactcacaac aaaataaata atatttatat aatctttttg gaataaaacg
 
−
    2281 aatgatcaaa cattattcaa aaagtcaatg gtatagtacg ttttgaaatt gatagactat
 
−
    2341 gagagcaaaa ttttgagata acatggaaaa ttatcctctt agacattgca ctgtgtaata
 
−
    2401 attaataata atgaatgaaa ggctaagact tttcttccac cttatataag tggttgaata
 
−
    2461 tatagcaatc acatcattac atgattttgt aaccaaccgt ctctatagct ccgatacagt
 
−
    2521 gctagtttca catcgtaata attaaagagt ataataataa atcgaggtgt acttctcatc
 
−
    2581 gatgaagtga tgtgccgctt agctaaatta aactcgtatg cgaaaaatca gtatatgtcc
 
−
    2641 ggttaatttc taagagagag attgagagag aataattgcg cccctccaaa tccccctctt
 
−
    2701 ggacgttagg gagctatata gacggtattg ctaagtgcga tgtgtacata acgtacctgt
 
−
    2761 cgtaggaaca tttctcatcc aaattaagta gtaatgcatg gcatgaaatc catttttgta
 
−
    2821 ttttgcatgg caaagaatga caacaaggaa tacactagct agccctgccc tttttcaatt
 
−
    2881 taatttaaca tcaaacttag ttattgtatt tcttttgtca gaatagcatg cattgcatac
 
−
    2941 tctttaaaaa taattaatta gtgtatttta ctagtcttac aaaagtatca agagagacaa
 
−
    3001 ctaattatag ttgggagaca ccaaacttgt ttttaataat gacaattaaa accctacctc
 
−
    3061 tacatccaac atagacgtac atagtccgaa ggcgccaaat atttgtacat ttagctacca
 
−
    3121 gatttcagta cgagttctca cattataatt ttgatttttt tatttttttt ataaacaatc
 
−
    3181 tggtaccctt ttatgtctgg aaggaaaaaa aaaatctaaa ttgcaacatt ttagtcggtg
 
−
    3241 agaatggtac tctgtcctag ctactttcta cacatgagag agagagagag agagagagag
 
−
    3301 agagccttta attgcccttg cccatgcatc tttctttgca cacatgtatg cttttcacat
 
−
    3361 tgtcatgagg agagaacttg ttaagttgca cacatgtgtg ctttgcatgt cttcaggtta
 
−
    3421 cctggaaggg catttgcaag gagaggccat gtatggctca ctggagcaaa tgaagttgac
 
−
    3481 agcaaagtat tcctaagagc aattcttgcc aaggttcagc catcaccttc tcttacctat
 
−
    3541 ttttcactct gaatgccaac agtgctttgc acattgtagt ctgtttgcag actgcaaatg
 
−
    3601 atgaccataa tcagatcaga aaataaaata atattatata ctttttgagc cagctagcaa
 
−
    3661 gaatatgtaa caataattct cctttttttt tcttgttctt ttccctgatg tggtgcataa
 
−
    3721 caaataacca aactgatgaa tggcagagtg ctggtatcca ggtatttgcc tctaaaagta
 
−
    3781 gctacacgtt tactatgaaa ttttgtggct tttgttcatc tttggatgca gtggccatta
 
−
    3841 tctaaaaact atgaatttcc agactgcagt ttttatctaa ttttgtgact ttgtacatca
 
−
    3901 gacagttgtg tgcattcctg ttgtcgatgg cgtcctggaa attggaacta cggaaaaggt
 
−
    3961 gatttcgtat attatcagct gacaatctaa ttatatgggc catataatta agtataaatc
 
−
    4021 aaaatacctc ataatatatt ataaagtatc taatgtgatt atgtgaatat tggctatttc
 
−
    4081 aatgtaattt gatatatgaa actgataatc ctctgaaact ccgtaaggat caaactaatc
 
−
    4141 aaaatgtata tattttcaag gtggaggaag atatgggcct gattcagtat gcaaggggca
 
−
    4201 tcttcatgga tcaacatggc atccacatga agcctaccct ctcacagcac tcaacatcca
 
−
    4261 acccagtcac ccactgtact catcagcatc caatccaggt tcagatgcaa ctaggtatca
 
−
    4321 ccagccaaac aaagtttgat tattcagatg agctcaatgc agatgaggag aatgatgaca
 
−
    4381 cagaagaaga gggcatgtca ggttcagaca ctaacaacac tgacactgaa aggaattcag
 
−
    4441 gccagctgca acttcaaatg caagaccaac tgaacatggt gagcaatgac caccagacaa
 
−
    4501 taccaaataa tgcagtttcc agtgagctaa tgcagtgtga gatgtcagaa gtggtaagag
 
−
    4561 atggctgctc aaataatatt ttagaggatg aaatccaaat gctgatggat tgccaaaaca
 
−
    4621 gtaattgtca gttaaatttg caagggccag atgagccttg tcactcttgg cattttctct
 
−
    4681 gcgaggagtt acaaaatgat taccagccag gtattacatt tgagaagata atccttcaaa
 
−
    4741 agcacccttg ttccaaaaat atatatttgt actcttcaca caagcactgc catttttttt
 
−
    4801 cttttttgca tacatcctca attcttgcat ttcttttcca tatatttgat acaactgtct
 
−
    4861 ccatttccct tctgtcacag ctactgaaga tcaagtggca tcacctgaaa atacccatta
 
−
    4921 cccaaaaaca ctcatgacaa tcctacatta caacacgctg cgacagcaag agatgaacat
 
−
    4981 caagaactac ttgccagttt cagagaaatc atcattctcc agatggacta ctcctgaagg
 
−
    5041 aagtgatgac aacaagacca tgatcagtcc aggcaccaca cagagaatgc tcaagagcat
 
−
    5101 cctgatgatt gttcccagta gtcactgcag ttacagggga gcagaaacac ctgaatcaag
 
−
    5161 gggcgggaaa ggcgcaagtg gaacgcgaaa agtcggtgcc atccaaggtg atttcagtgc
 
−
    5221 caaccatgtg ctgaaagaga ggagaagaag agagaagctc aatgagaagt tcataattct
 
−
    5281 gcgatctttg gtacctttca tgacaaaggt aattaagtac tccctctatt tctataaagc
 
−
    5341 cgtatttgac tagttatctt atttagaaag tatgtgcaaa tatgtaaaat ataagtcata
 
−
    5401 cttaaagaac ttttaatgtt attaaataat aagtcacacc aaaaataaaa catatatatt
 
−
    5461 tttaataaga caaatgatta aatgtatata taaaaattaa tagcgtcaca tattttaaaa
 
−
    5521 tagaggggta tttaagtacc cacaggatca tcaaaattca gttatctttt cttaagcctc
 
−
    5581 taacgaacat tggaagatcc tcactaatgg cagcatgaat ctagggttca ctatttcgga
 
−
    5641 atgcaaaata tgttttaccg ggcatccgat ttttaaaaaa ttcagaatga agaaaattga
 
−
    5701 atctttttta tggatttgaa taaatcttga taaattcgaa aaaatttccg aacttttggc
 
−
    5761 cagaagtgaa tcctacccgt atccaccggt aataaaccta aatttttggg agtaatgaat
 
−
    5821 taatgttata tataatccat gaattatata gttccaaact actccgtaac aaattttcag
 
−
    5881 gagtagtgaa attaatatta ttacaatctc agaaaaaaat ggcagaaaca attaatctgt
 
−
    5941 tttcaattat taattaattt gtttttgtgt ccagatggac aaggcgtcga tactaggcga
 
−
    6001 cacgatcgag tacgtgaagc agctaaggaa ccgcatacaa gagctcgagt cgtcgtcgtc
 
−
    6061 gtcgtcacga gcagccgccc gggcgccatc ggcggcggcc gccgggaggc ggaggaagag
 
−
    6121 atccgccgcc gccgccactg ccacggcggc ggaagggatg agcagcagca atggccgcaa
 
−
    6181 tggcggcgag gcggcggagg tggtgcaggt gtccatcatc gagagcgacg cgctgctgga
 
−
    6241 gctccggtgc ggttgcggcg gcggcggcgg cggtgtggtg ctgctccggg tgatgcaggc
 
−
    6301 gatgcaggag ctccagctgg aggtcaccgc cgtccaggcc tcgtgcgccg gtggcgagct
 
−
    6361 gctcgccgag ctgcgcgcca aggtcgtcgt tatgatcctg atctgcatga aaatgcaaat
 
−
    6421 gcaaatgcaa atgcagaatt aa
 
−
</dnaseqindica>|
 
−
Link = [http://www.ncbi.nlm.nih.gov/nuccore/78057269]|
 
−
}}
 
−
[[Category:Genes]]
 
−
[[Category:Oryza Sativa Japonica Group]]
 
−
[[Category:Japonica Genes]]
 
−
[[Category:Japonica Chromosome 7]]
 
−
[[Category:Chromosome 7]]
 

Latest revision as of 15:25, 21 December 2016

The rice gene Os07g0211500 was reported as Rc in 2006[1] by researchers from USA.

Annotated Information

Gene Symbol

  • Os07g0211500 <=> Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C

Function

Rc allele phenotypes. [1].
  • Rc is a domestication-related gene required for red pericarp in rice (Oryza sativa).
  • Rc encodes a basic helix-loop-helix (bHLH) protein that was fine-mapped to an 18.5-kb region on rice chromosome 7 using a cross between Oryza rufipogon (red pericarp) and O. sativa cv Jefferson (white pericarp).
  • Rc is a positive regulator of proanthocyanidin.


Expression

  • Rc gene was expressed in both red- and white-grained rice but that a shortened transcript was present in white varieties.

Evolution

Figure 5. Phylogenetic Analysis of Rc and Other bHLH Proteins. [1].

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Labs working on this gene

  • Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York 14953-1901
  • Department of Plant Biology, Cornell University, Ithaca, New York 14853

References

  1. ↑ 1.0 1.1 1.2 Sweeney M T, Thomson M J, Pfeil B E, et al. Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice[J]. The Plant Cell, 2006, 18(2): 283-294.


Structured Information