Difference between revisions of "User:Jieomlong"
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| − | + | F-box proteins play diverse roles in regulating numerous physiological processes in plants. This study isolated a gene (OsFbx352) from rice encoding an F-box domain protein and characterized its role in seed germination. Expression of OsFbx352 was upregulated by abscisic acid (ABA). | |
==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
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===Evolution=== | ===Evolution=== | ||
Please input evolution information here. | Please input evolution information here. | ||
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==Labs working on this gene== | ==Labs working on this gene== | ||
Latest revision as of 11:32, 3 June 2014
Please input one-sentence summary here. F-box proteins play diverse roles in regulating numerous physiological processes in plants. This study isolated a gene (OsFbx352) from rice encoding an F-box domain protein and characterized its role in seed germination. Expression of OsFbx352 was upregulated by abscisic acid (ABA).
Contents
Annotated Information
Function
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Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
BGIOSGA000063 |
|---|---|
| Description |
Putative uncharacterized protein |
| Definition |
Oryza sativa Indica Group BGIOSGA000063, complete gene. |
| LocusTag |
P0483G10.23 |
| Ensembl Transcript ID |
BGIOSGA000063-TA |
| Ensembl Protein ID |
BGIOSGA000063-PA |
| Length |
2809 |
| Source |
Oryza sativa Indica Group ORGANISM Oryza sativa Indica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:46486990..46489798 |
| Sequence Coding Region |
46489660..46489798,46489009..46489108,46488808..46488928,46488319..46488431,46488095..46488216 |
| Genome Context |
<gbrowseImage1> name=IndicaChromosome01:46486990..46489798 source=RiceIndica01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=IndicaChromosome01:46486990..46489798 source=RiceIndica01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>ATGGATGTGAGCAGGAGGAAGAAGTGGGTGGCGTGGGTGGCGGCGGTCACCATCTTCGTCGTGCTCATGCTCGTCACCCCGGCCATCCCGCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGGTGTCGTTGGGCTCGTCTTGTGCCATTACAAAAACTACTTCAGGCTAAACTCGCAAGGGGAGCTCTGGAGTTGGACACTGTTCTTTGCTGGTGTGACTGCTGTTGCTTTTGGTTCATCCTATTATCATCTCAAACCGAATGATGCCACACTAGTTTGGGACAGATTGCCGATGACAATTGCTTTCACATCTGTCATGGCCATTTTCATTATTGAGAGGGTTGATGATAGGGCAGGAACAAAGTCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATTGCAATACCTGTGATGGCTATTGTAATTCCACCAATGTATACACATTCGAGCTATTGGCTGTGGGCAGCAGGATTTTACCTCCTTGCTAAGGTAGAAGAGGCCGCAGATAAACCTATATATAAATGGACCCATCAAATTGTTAGCGGTCATACTCTTAAGCATCTAGCTGCTGCAATGGTGCCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACTCGATTCAACAAGGACAGGAATACAGTCGACTACAACTATATTGCAGTTTCCACTACACCTGAACCATAG</cdnaseq> |
| Protein Sequence |
<aaseq>MDVSRRKKWVAWVAAVTIFVVLMLVTPAIPQNEEYHDFADQRRLFLGIPNTLNVISNIPFFFVGVVGLVLCHYKNYFRLNSQGELWSWTLFFAGVTAVAFGSSYYHLKPNDATLVWDRLPMTIAFTSVMAIFIIERVDDRAGTKSLAPLVIAGALSIMFFDDLRPYAVIQFVPCIAIPVMAIVIPPMYTHSSYWLWAAGFYLLAKVEEAADKPIYKWTHQIVSGHTLKHLAAAMVPVFLALMLAKRTVEPERVSLFQRWKVKLVAVRETRFNKDRNTVDYNYIAVSTTPEP</aaseq> |
| Gene Sequence |
<dnaseqindica>1..139#691..790#871..991#1368..1480#1583..1704#1994..2153#2689..2809#ATGGATGTGAGCAGGAGGAAGAAGTGGGTGGCGTGGGTGGCGGCGGTCACCATCTTCGTCGTGCTCATGCTCGTCACCCCGGCCATCCCGCAGAACGAGGAGTACCACGACTTCGCCGACCAGCGCCGCCTCTTCCTCGGTATGCCACAAACCAACCCTCCCTCCCCGCCGCAAACCTAGGGCGGACCTTCCCTTGCGGCCGCCATAGCTCGCCGTCCGCGGTATTGAGCTCCCGTCTCTCCGAGCTATTGAGCTCTCGGGGTAGCCTCCACCCGGCGCCGGCAAGACGATCCGCGAGCAGGAGAGCAGCGATTGTGCCAGTGCTTGTCCCTGACGGCGCAATGGCCAACGTTGAGTGACGAGTTGACTCGAAATCGCGAATTCGAGGTCGCTTGCATCGCCTAAATCGATCCCCTTTGTATTCACTACAAAAATTGATTGCCCTTTGTTTGCGCTGGGTTCAGCAAGATTAGCTTGTTAGGAAGGATTTTGCAGGCTATACCAGTTTCCTGTTTATTTCACGAACCCAAAATAAACATGAATATAGTATAATTGAGGGGGAATTTGAGGCGCAAACGAATAGAGTTTAAATTTTGCTTATATGTTCAATAAGAGGGTTGCAATGCTTGTAATCACTACTTGATGCACTAAGTTTGCAAAATCATGTGGATTTTTTTTTTTGTTTTGCAGGGATCCCCAATACGCTGAATGTGATTTCAAACATCCCCTTCTTTTTTGTGGGTGTCGTTGGGCTCGTCTTGTGCCATTACAAAAACTACTTCAGGCTAAAGTTAGACCATTACTGGTTCATCTTCTAATTCTAGTTAAGATTTTGATGCACTCTGTTGTTAACCTTCCCCTTCCTGGCAGCTCGCAAGGGGAGCTCTGGAGTTGGACACTGTTCTTTGCTGGTGTGACTGCTGTTGCTTTTGGTTCATCCTATTATCATCTCAAACCGAATGATGCCACACTAGTTTGGGACAGATTGCCGGTGAGTTGTTTCTAGACTTACATTGCCTTGCTCTAGGATTTGTACACACCCCATTATGTTGAAGCTGTCTCAGAATGTCAATGCATACATTTTTTTTGGTGGGATAGAATTCAACTCAGATCCTTGTGTAGTATAATCTGAATATGCTATGGCCCTGTTTAGATAGTGTTGTTCTGTTGGGTGTGATCTGCTTGAATCAAAACAGGGTAACTAATCCACTTGGATCTTTTGCCTGATACGCTCTAGTATATTTGGCTTGTTTTCTTCAGAATTGCCTGTCAGAGACATAAAGCATGTCATCAGTTCATAATTTTCACCCTTGCTTTTATCAATATTTAATATGTTAAAGGATGGCATATTTGCTTGTTCTATGTAGATGACAATTGCTTTCACATCTGTCATGGCCATTTTCATTATTGAGAGGGTTGATGATAGGGCAGGAACAAAGTCCCTAGCACCTCTTGTTATTGCTGGTGCACTAAGCATCATGTATTGGAGGCAAGCTTCTCCAATTGTTTAACCATCCTTCCTCAGAAATATTTTCTGTACTTCTTTCACACCTTCCATTTTGCTGCCTTAACTCTTATGTAGGTTCTTTGACGATCTTCGCCCATATGCAGTAATTCAGTTTGTTCCATGCATTGCAATACCTGTGATGGCTATTGTAATTCCACCAATGTATACACATTCGAGCTATTGGCTGTGGGCAGCAGGTTAGTGTTATTCTTGATCAATAGTATTTGATCTATGTACCTTCATTAGCATTTAGGTTGAAAAATGTGGTATTTGTGGTTCACCTATATATTATGAATCATTCAATTGATCATTTCTCTGCACCTAATAACTGTTGATGATACTTAAATGGTTTTCATTTTAATCTATTTCTACATATCATAAATTGATTCGCAGTGACCAAGTTAATTGATTGGTTTTCTGGAAATTCATACACAATCAGCACCTCACCATATTTTTCTGTTTTCTGATTTCTCAAAACAATTCCAGGATTTTACCTCCTTGCTAAGGTAGAAGAGGCCGCAGATAAACCTATATATAAATGGACCCATCAAATTGTTAGCGGTCATACTCTTAAGCATCTAGCTGCTGCAATGGTGCCTGTGTTCTTGGCACTCATGCTGGCCAAAAGGACTGTTGAACCAGAAAGGTATGCTTTATATACTGGCGTTTTAAGAACCACGTCTTTACTTCGATAAGTGCATCATTGGGTTCAACTCTTGAACTGTTCTTCTATTTAAGCTGTTGAATGGACCTTGGTCAGAATTCAGAAGATATACTTGCGTTGGCATTGTTACTTTGTCTTAAGGAATTATTCCATCATAAATTATTGAGCTATCTGTTCTATTAATTTTGCAAATGCAATCACTATTTGTTTTTGGGAAAAGAATGAAGTTTGTTTTCCTTCGGTTAGAATAAATTCATAAATGCCGTTGTAACTTTTGAATTAGTGTGTTGTTTGTTTCGCCAGTAATTCCATGGTGGTTCTCCCATAGTCCCATATCTTTGCTTCTTAGGATGAGCATATTTCAAATAATTTTATCCCCTCCATTGCAAACGATATCTGTTGTCTGTTGATTGATTTGTCAGCCTTTTTTTTAGCTCTGTTAATATCATGATTAAATTTATGAAGTCTTGCATAACTCTACCCCGTGTCTCATGATATTTTTTTTTCTGGAATGCAGGGTAAGTTTATTCCAGCGGTGGAAGGTCAAGTTGGTTGCAGTGAGAGAGACTCGATTCAACAAGGACAGGAATACAGTCGACTACAACTATATTGCAGTTTCCACTACACCTGAACCATAG</dnaseqindica> |
| External Link(s) |
