Difference between revisions of "LTN1"
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==Structured Information== | ==Structured Information== | ||
{{IndicaGene| | {{IndicaGene| | ||
| − | GeneName = | + | GeneName = LTN1| |
| − | Description = | + | Description = Leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue.| |
Definition = Oryza sativa Indica Group BGIOSGA000062, complete gene.| | Definition = Oryza sativa Indica Group BGIOSGA000062, complete gene.| | ||
| − | tag = | + | tag = LOC_Os05g48390| |
| − | + | Length = 2631| | |
| − | |||
| − | Length = | ||
Source = Oryza sativa Indica Group | Source = Oryza sativa Indica Group | ||
| Line 35: | Line 33: | ||
clade; Ehrhartoideae; Oryzeae; Oryza. | clade; Ehrhartoideae; Oryzeae; Oryza. | ||
| | | | ||
| − | Chromosome = [[:category:Indica Chromosome 1|Chromosome | + | Chromosome = [[:category:Indica Chromosome 1|Chromosome 5]]| |
| − | AP = Chromosome | + | AP = Chromosome 5:27740476..27744607| |
| − | CDS = | + | CDS = 27740476 ..27744607| |
GCID = <gbrowseImage1> | GCID = <gbrowseImage1> | ||
| − | name= | + | name=IndicaChromosome05:27740476 ..27744607 |
source=RiceIndica01 | source=RiceIndica01 | ||
preset=GeneLocation | preset=GeneLocation | ||
| − | </ | + | </gbrowseImage| |
GSID = <gbrowseImage2> | GSID = <gbrowseImage2> | ||
| − | name= | + | name=IndicaChromosome05:27740476 ..27744607 |
source=RiceIndica01 | source=RiceIndica01 | ||
preset=GeneLocation | preset=GeneLocation | ||
| Line 58: | Line 56: | ||
[[Category:Indica Genes]] | [[Category:Indica Genes]] | ||
[[Category:Indica Chromosome 1]] | [[Category:Indica Chromosome 1]] | ||
| − | [[Category:Chromosome | + | [[Category:Chromosome 5]] |
Latest revision as of 15:56, 5 June 2014
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Contents
Annotated Information
Function
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Expression
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Evolution
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Labs working on this gene
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Structured Information
| Gene Name |
LTN1 |
|---|---|
| Description |
Leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue. |
| Definition |
Oryza sativa Indica Group BGIOSGA000062, complete gene. |
| LocusTag |
LOC_Os05g48390 |
| Ensembl Transcript ID |
{{{tid}}} |
| Ensembl Protein ID |
{{{pid}}} |
| Length |
2631 |
| Source |
Oryza sativa Indica Group ORGANISM Oryza sativa Indica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:27740476..27744607 |
| Sequence Coding Region |
27740476 ..27744607 |
| Genome Context |
<gbrowseImage1> name=IndicaChromosome05:27740476 ..27744607 source=RiceIndica01 preset=GeneLocation </gbrowseImage |
| Gene Structure |
<gbrowseImage2> name=IndicaChromosome05:27740476 ..27744607 source=RiceIndica01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>ATGGCGGCGGCGGGCGGCGGCGGCGCGGGGGCGGCCGGAGGCGGGAAGGTGTCGTTCAAGATCATCCTCACCTCCGACCCCAAGCTCCCCTTCAAAGTGTTTAGCGTGCCCGAGGCGGCGCCGTTCACCGCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCCAGACCAGCGCCATCATCACCAACGATGGAGTTGGCATCAACCCACAGCAAAGTGCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAGTTGGAGCATTGGCTGCGCCTTTCTAG</cdnaseq> |
| Protein Sequence |
<aaseq>MAAAGGGGAGAAGGGKVSFKIILTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGALAAPF</aaseq> |
| Gene Sequence |
<dnaseqindica>1..98#224..321#1089..1121#1611..1690#ATGGCGGCGGCGGGCGGCGGCGGCGCGGGGGCGGCCGGAGGCGGGAAGGTGTCGTTCAAGATCATCCTCACCTCCGACCCCAAGCTCCCCTTCAAAGTGTGAGTAGCAGCACCCCCGCGATCTCAGATCAGATCTCTCTCTCGCTCTCGATTGATAGGGGTGTTTGCGGTGGCCGTCTCTGCTTGTTCTGATCTGCGGGGTTGGTTTGCCCTGTCTCCTGCAGGTTTAGCGTGCCCGAGGCGGCGCCGTTCACCGCGGTGCTCAAGTTCGCCGCCGAGGAGTTCAAGGTCCCGCCCCAGACCAGCGCCATCATCACCAACGGTGAGTCCGTGTTCGCGTGTTCCCCCTCCGTTCCGTGCTGCGGCCTCTGTCATGAGTTTTCTCTCGTTTCGCCGAACCATAATTTTTGTTTCCGCTACCGCGATTGGGAAGAGGATCTATGTCTCGATGTTATGTTCTGTTGCCTGGTGATTTGATGCGTCGCGCAATGATAATTCATAGCTTTTCTGGGCTGCTTCTCATGAATCGAGTCTGCTAAGTATATGGTCTAGTGATTGGAAGGGAAAATTGGTGTGGAATTCAGTTCGAAATTTAGGTTCGTTCAAACCTGCATTCAATATTCATTACTACATGATATTTGATTTAAACATACAGTATGCCATGTTGAACTTCAATGCCAAGGATTGCATCTCTAGTAAAAAGGTGTACTGATTTATTGGTGCTGTGTCAATCTGATTTGGGGGTTCCAAGAGTGACTTGATGATTTGTGTGGAAGGCTTGCACCATTAGTGATGTATGGACGGCTGCCAATGGCAATGTTGCAGCTTGTAATTTTCTCATTGCCCTAATAGATTTCTCTTGTTGGTTGCATTTACTTTGCAAGTTGTAATTTAGACGATACATTTATGCTGTGTTATACTACAGTGATTGATGGATTATCCTTGAACTTATTAGGCTAGCCATCCTCATAACATATTATTGACCTGAGTGATGGATGGCTGATCCTTAAGCCTTATGGTTTTCTCATAGTGAAGCAGTGATTCTGAATGCCATATATTGAAAATAATGTTGTGTCCCTTCTTTTGCAGATGGAGTTGGCATCAACCCACAGCAAAGTGCAGGTACAGTTTCCGGATTCTGTTTTCTACTACTATGTATAAGGCTATCAATTCTTTAAATTTGAAACATTATTTTGTTTTAGAGAACAACCTGCTTCGCTGTCCCAGGCTCCCAGCATAGTTTAGTAGACTGTAGAAGATTACATTGCTTATTGATGCACTTGAATTGTCCATTTGATTTGTGCTGACATTGTAGTAACTAGAATTTTACAGTTGTATCAGCGCAATTGTAAAAGAACTACTTGAGTTTGATATGGGCTGTGGCACAAAGCAAACACAATTGCAGATACTTTACCCAAACATGCATGTCCTTTTTGCTGGGTTATGGATGAGCCTAAAATGCAGTCGTGCAGTAATCTTATTTCTCAAATTAGGTTTCAGTAACATAAGAAAGATCTATCTTAAGCATATGCAGTACCATGAATTTTTTAAACTTAAGTTTTACACATTCTCTTTTCTACTCGCTGATGTGAGCTGCTTTCTTTCGTTCAGGCAATGTGTTTCTAAAGCATGGCTCAGAGTTGCGCCTCATTCCCCGCGATAGAGTTGGAGCATTGGCTGCGCCTTTCTAG</dnaseqindica> |
| External Link(s) |
