Difference between revisions of "Main Page"

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<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to RiceWiki</div>
 
<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to RiceWiki</div>
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<div style="padding:0em; font-size:100%">[[:Category:Genes |66,390]] rice genes inside</div>
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<div style="padding:0em; font-size:100%">[[:Category:Genes |86,216]] rice genes inside</div>
 
<div style="padding:0em; font-size:100%; color:#492;">'''Contribute your efforts, further our knowledge.'''</div>
 
<div style="padding:0em; font-size:100%; color:#492;">'''Contribute your efforts, further our knowledge.'''</div>
  
 
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*<span class=plainlinks>[[:Category:Genes|Genes]]</span>
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*<span class=plainlinks>[[Special:CuratedGenes|'''Genes''']]</span>
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*[[RiceWiki:GeneFamilies|Gene Families]]
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*[[RiceWiki:Omics Knowledge Portal for Rice|'''Omics Knowledge''']]
 
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*[[RiceWiki:Chromosomes|Chromosomes]]
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*[[Special:BLAST|'''BLAST''']]
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*[[RiceWiki:Databases|Databases]]
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*[[RiceWiki:Templates|'''Templates''']]
 
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*[[RiceWiki:Genome_Browser|Genome Browser]]
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*[# '''Genome Browser''']
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*[[RiceWiki:Templates|Templates]]
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*[http://ngdc.cncb.ac.cn/databasecommons/search?term=Oryza%20sativa '''Databases''']
 
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{|
 
{|
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*More than [[Special:CuratedGenes|'''1000 manually curated genes''']] are validated as high quality in RiceWiki.
 +
*Gene Expression Profiles retrieved from the [https://ngdc.cncb.ac.cn/red '''''IC4R-RED'''''] are integrated in RiceWiki.
 +
*[[Special:AuthorReward |'''Quantified contributions''']] of all curators are calculated by: [http://www.ncbi.nlm.nih.gov/pubmed/23732274 ''AuthorReward'']
 +
*[# '''35,717 Scientific Articles'''] associated with rice are provided for curators.
 +
*Here, is a [[RiceWiki:TBC|'''List of genes ''']]to be curated for the next season. If you are interested, just [[RiceWiki:Joining|'''contact us''']].
 
|
 
|
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*Featured genes: [[Os01g0883800]], [[Os02g0170300]], [[Os03g0149100]], [[Os08g0162100]]
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'''      |*******Recently Curated Genes*******|'''<br>'''    [[Os06g0683400]]''', '''[[Os03g0125100]]''', '''[[Os01g0192000]]'''    <br>'''    [[Os01g0848400]]''', '''[[Os06g0107700]]''', '''[[Os10g0563600]]''' <br>'''    [[Os01g0919400]]''', '''[[Os03g0180800]]''', '''[[Os12g0583700]]'''<br>'''    [[Os09g0306400]]''', '''[[Os10g0553300]]''', '''[[Os09g0286400]]'''
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*Genes to be curated: [[RiceWiki:TBC|a list of genes to be curated]]
 
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*[[Media:CommunityCuration-RiceWiki.pptx]] [[File:Ppt_ico.gif | link=File:CommunityCuration-RiceWiki.pptx]]
 
 
|
 
|
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*Curated genes: [[Special:CuratedGenes | {{StatisticsActivity:type=curatedgenecount}} curated genes]]
 
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*User list: [[Special:ListUsers| {{StatisticsActivity:type=usercount}} registered users]]
 
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*Contribution score: [[Special:AuthorReward |quantified contributions]] by [http://www.ncbi.nlm.nih.gov/pubmed/23732274 ''AuthorReward'']
 
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*Literature: 31527 rice-related publications associated with rice genes
 
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*Transcriptome: gene expression profiles at 22 developmental stages and tissue types based on RNA-Seq
 
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*Variations: SNPs and INDELs (under collection)
 
 
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<!--------------main part one---------------->
 
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{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
|-
 
|-
 
<!-----------Rice Genome Overview------------>
 
<!-----------Rice Genome Overview------------>
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Rice Genome Overview</div>
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:120%; font-weight:bold;">Omics Knowledge Portal for Rice (OKP4R)</div>
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<div style="padding:1em 0em 0em 0em; text-align:center;">[[image:RiceG.jpg]]</div>
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<div style="width:515px;padding:0.5em 0.5em;font-size:100%;">
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== ==
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* '''OKP4R''': a multidisciplinary portal to share omics knowledge for rice. [[RiceWiki:Omics_Knowledge_Portal_for_Rice|'''(More...)''']]<br>
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<div style="padding:0.2em 0.5em;">
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[[File:IC4R_Omics_Pic_Jian.png|right|505px|'''Figure 1. Omics Knowledge Portal for Rice'''|link=RiceWiki:Omics_Knowledge_Portal_for_Rice]]
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====[[:Category:Japonica Genes | ''Oryza sativa Japonica'' Group]]====
 
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'''Chromosome'''
 
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[[:category:Japonica Chromosome 1|'''1''']].
 
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[[:category:Japonica Chromosome 2|'''2''']].
 
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[[:category:Japonica Chromosome 3|'''3''']].
 
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[[:category:Japonica Chromosome 4|'''4''']].
 
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[[:category:Japonica Chromosome 5|'''5''']].
 
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[[:category:Japonica Chromosome 6|'''6''']].
 
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[[:category:Japonica Chromosome 7|'''7''']].
 
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[[:category:Japonica Chromosome 8|'''8''']].
 
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[[:category:Japonica Chromosome 9|'''9''']].
 
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[[:category:Japonica Chromosome 10|'''10''']].
 
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[[:category:Japonica Chromosome 11|'''11''']].
 
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[[:category:Japonica Chromosome 12|'''12''']].
 
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[[:category:Japonica_Mitochondrion|'''Mt''']].
 
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[[:category:Japonica_Plastid|'''Pd''']]
 
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====[[:Category:Indica Genes | ''Oryza sativa Indica'' Group]]====
 
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'''Chromosome'''
 
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[[:category:Indica Chromosome 1|'''1''']].
 
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[[:category:Indica Chromosome 2|'''2''']].
 
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[[:category:Indica Chromosome 3|'''3''']].
 
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[[:category:Indica Chromosome 4|'''4''']].
 
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[[:category:Indica Chromosome 5|'''5''']].
 
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[[:category:Indica Chromosome 6|'''6''']].
 
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[[:category:Indica Chromosome 7|'''7''']].
 
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[[:category:Indica Chromosome 8|'''8''']].
 
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[[:category:Indica Chromosome 9|'''9''']].
 
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[[:category:Indica Chromosome 10|'''10''']].
 
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[[:category:Indica Chromosome 11|'''11''']].
 
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[[:category:Indica Chromosome 12|'''12''']]
 
 
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<!-----------------Rice---------------------->
 
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Rice Story</div>
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<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:120%; font-weight:bold;">Rice Story</div>
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[[File:Damifan.jpg|right|120px|margin: 5px|]]
 
 
*As an important food
 
*As an important food
 
:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
 
:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
 
*As a biological model
 
*As a biological model
 
:Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, ''indica'' and ''japonica'', were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.</div>
 
:Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, ''indica'' and ''japonica'', were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.</div>
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|<div style="font-size:110%; font-weight:bold;">Recent Modified Genes</div> {{StatisticsActivity:type=edits|count = 10}}
 
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|<div style="font-size:110%; font-weight:bold;">Highly Accessed Genes</div> {{StatisticsActivity:type=visits|count = 10}}
 
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|<div style="font-size:110%; font-weight:bold;">Most Annotated Genes</div> {{StatisticsActivity:type=contributes|count = 10}}
 
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<!---------------Omics Knowledge Portal for Rice----------------->
 
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<div style="background:#f4f4f4; border-bottom:1px solid #c6c6c6; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Publications</div>
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* [http://www.ncbi.nlm.nih.gov/pubmed/24136999 RiceWiki: a wiki-based database for community curation of rice genes] (2014) ''Nucleic Acids Research'', 42(D1),D1222-D1228.
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Featured Research</div>
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* [http://www.ncbi.nlm.nih.gov/pubmed/23732274 AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification] (2013) ''Bioinformatics'', 29(14):1837-1839.
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<div style="width: 527px; height: 300px; padding-bottom: 30px;text-align:center">
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<script src="http://cdn.tagul.com/embed/tc86pr9cqqh1"></script>
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<!-- Please don't remove attribution to Tagul.com -->
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<a href="http://tagul.com/">Created with Tagul.com</a>
 
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;"> Latest News </div>
 +
<div style="padding:0.5em 0.5em;font-size:100%;">
 +
* '''Sep 04th, 2017''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/bdf2017 The 2017 Big Data Forum for Life and Health Sciences] will be held in Beijing China from October 13th to 17th.
 +
* '''Jun 07th, 2017''': The Upcoming Conference Note: [http://www.ibc2017.cn/ The XIX International Botanical Congress in 2017] will be held in Shenzhen China from July 10th to 13th.
 +
* '''May 20th, 2017''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/dpd The Workshop on DNA Methylation and Precision Medicine] will be held in Beijing China from June 08th to 10th.
 +
* '''Nov 05th, 2016''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/bdf The 2016 Big Data Forum for Life and Health Sciences] will be held in Beijing China from December 05th to 08th.
 +
* '''Jun 22th, 2016''': [[Omics Knowledge Portal for Rice| The Omics Knowledge Portal for Rice]] was launched at RiceWiki.
 +
 +
 +
</div>
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|}
 
<!--------------main part two---------------->
 
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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Joining RiceWiki</div>
 
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<div style="padding:0.5em 1em;">
 
−
* RiceWiki allows any user to view and search but only registered users can add and edit content.
 
−
* To become a registered user, please email the RiceWiki Team at [mailto:ricewiki@big.ac.cn ricewiki@big.ac.cn] to tell us your preferred login name, real name, research interests, etc., and we will set up an account for you.
 
−
* Please also spread this news to any one who might be of interest. [[File:Ppt_ico.gif | link=File:CommunityCuration-RiceWiki.pptx]]</div>
 
  
 
<!-------------Lab Information-------------->
 
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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Publications</div>
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<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">About Us</div>
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<div style="padding:0.5em 1em;font-size:100%">
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<div style="padding:0.5em 1em;">Our group works in the field of [http://cbb.big.ac.cn Computational Biology and Bioinformatics] (CBB), currently with a particular focus on building biological knowledge wikis in aid of community curation of massive biological knowledge.
+
'''Primary publication:'''<br>
 +
*'''RiceWiki: a wiki-based database for community curation of rice genes.''' ''Nucleic Acids Research'' (2014), 42(Database issue):D1222-1228. [http://www.ncbi.nlm.nih.gov/pubmed/24136999 PMID=24136999]
 +
'''Related publications:'''
 +
*'''Information Commons for Rice (IC4R).''' ''Nucleic Acids Research'' (2016), 44(D1):D1172-1180. [http://www.ncbi.nlm.nih.gov/pubmed/26519466 PMID=26519466]
 +
*'''Bringing biocuration to China.''' ''Genomics Proteomics Bioinformatics'' (2014), 12(4):153-155.[http://www.ncbi.nlm.nih.gov/pubmed/25042682 PMID=25042682]
 +
*'''AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.''' ''Bioinformatics'' (2013), 29(14):1837-1839.[http://www.ncbi.nlm.nih.gov/pubmed/23732274 PMID=23732274]]
 
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">2014年度RiceWiki群体审编（Community Curation）奖励条例</div>
 
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<div style="padding:0.5em 0.5em;">{{:RiceWiki:2014Award}}</div>
 
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">致全体参与者</div>
 
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<div style="padding:0.5em 0.5em;">
 
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*群体审编（Community Curation）是生物大数据整合和相关文献信息集成的重要方法之一（相关信息：[http://www.biocurator.org/what.shtml 国际生物审编协会]；[http://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18769432/ Big data: The future of biocuration]）。
 
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*水稻是我国最重要的经济农作物之一，其数据知识库的建立可有利推动我国水稻的科学研究与应用转化，并影响国内其它相关领域的基础研究。
 
−
*我国长期缺乏一个在国际上有一定影响力的数据库/中心，美国有NCBI，欧洲有EBI......
 
−
*但是，你们现在所作的一点一滴正在改变这个现状，我们正在朝向建立面向我国重大需求且不同于现今国际生物数据中心的方向前进！
 
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">注册 & 编辑</div>
 
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* 请发送电子邮件至ricewiki(AT)big.ac.cn，并提供您的注册用户名（英文）、邮件地址(确保邮箱名正确)和真实姓名。
 
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* 您查收来自ricewiki(AT)big.ac.cn的邮件，里面有您的密码，请尽快登录并修改个人密码。如果两天内没有收到邮件，请检查垃圾邮箱。
 
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* 如果您确实没收到来自ricewiki(AT)big.ac.cn的邮件，请再次发送邮件联系ricewiki(AT)big.ac.cn。
 
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* 当多人在同一时间编辑同一页面时，会发生编辑冲突。建议每次编辑一小段内容并查看编辑历史。详细信息请查看：http://en.wikipedia.org/wiki/Help:Edit_conflict
 
 
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Latest revision as of 02:37, 25 November 2025


Welcome to RiceWiki
86,216 rice genes inside
Contribute your efforts, further our knowledge.
Introduction
RiceWiki, a project of IC4R (Information Commmons for Rice) as well as a component of ScienceWikis, is a wiki-based, publicly editable and open-content platform for community curation of genes and Omics Knowledge in rice, viz., a community-curated resource of rice knowledge. Unlike conventional biological databases based on expert curation, RiceWiki harnesses collective intelligence to collect, edit and annotate information about rice, quantifies users' contributions in each annotated gene and provides explicit authorship for each contributor to encourage more participation from the whole scientific community. Welcome to join us !
Nothing great is ever accomplished in isolation. – Yo-Yo Ma
      |*******Recently Curated Genes*******|
     Os06g0683400, Os03g0125100, Os01g0192000     
     Os01g0848400, Os06g0107700, Os10g0563600 
     Os01g0919400, Os03g0180800, Os12g0583700
     Os09g0306400, Os10g0553300, Os09g0286400
Omics Knowledge Portal for Rice (OKP4R)
  • OKP4R: a multidisciplinary portal to share omics knowledge for rice. (More...)
Figure 1. Omics Knowledge Portal for Rice
Rice Story
  • As an important food
Rice is the seed of the monocot plants Oryza sativa (Asian rice) or Oryza glaberrima (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 (Full article...).
  • As a biological model
Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, indica and japonica, were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.
Featured Research

<html>

<script src="http://cdn.tagul.com/embed/tc86pr9cqqh1"></script> <a href="http://tagul.com/">Created with Tagul.com</a>

</html>

Latest News


Publications

Primary publication:

  • RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Research (2014), 42(Database issue):D1222-1228. PMID=24136999

Related publications:

  • Information Commons for Rice (IC4R). Nucleic Acids Research (2016), 44(D1):D1172-1180. PMID=26519466
  • Bringing biocuration to China. Genomics Proteomics Bioinformatics (2014), 12(4):153-155.PMID=25042682
  • AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification. Bioinformatics (2013), 29(14):1837-1839.PMID=23732274]
Visitor Statistics

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Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Main_Page&oldid=278178"