|
|
| (2 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''''Os03g0318600''''' was reported as '''''OsbZIP28''''' in 2008 <ref name="ref1" /> by researchers from India. |
| − | GeneName = Os03g0318600|
| |
| − | Description = Similar to Transcription factor HBP-1b(C38) (Fragment)|
| |
| − | Version = NM_001056480.1 GI:115452688 GeneID:4332660|
| |
| − | Length = 5022 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os03g0318600, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os03g0318600''''' '''<=>''' '''''OsbZIP28,OsbZIP, bZIP28''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | * The basic leucine (Leu) zipper (bZIP) proteins compose a family of transcriptional regulators present exclusively in eukaryotes. |
| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
| + | * The '''''OsbZIP''''' proteins characteristically harbor a bZIP domain composed of two structural features: a DNA-binding basic region and the Leu zipper dimerization region. |
| − | AP = Chromosome 3:11526895..11531916|
| + | * bZIP proteins have been shown to regulate diverse plant-specific phenomena, including seed maturation and germination, floral induction and development, and photomorphogenesis, and are also involved in stress and hormone signaling. |
| − | CDS = 11527145..11527291,11527557..11527802,11527947..11528218,11528319..11528370,11528475..11528552<br>,11529635..11529694,11529781..11529861,11530893..11530958|
| + | |
| − | GCID = <gbrowseImage1>
| + | ===Expression=== |
| − | name=NC_008396:11526895..11531916
| + | * The researchers from India find specific or coexpression patterns of rice bZIP transcription factors starting from floral transition to various stages of panicle and seed development. |
| − | source=RiceChromosome03
| + | * bZIP transcription factor-encoding genes in rice also displayed differential expression patterns in rice seedlings in response to abiotic stress and light irradiation. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | ===Evolution=== |
| − | GSID = <gbrowseImage2>
| + | * The phylogenetic relationship among rice bZIP domains as well as with bZIP domains from other plant bZIP factors suggests that homologous bZIP domains exist in plants. |
| − | name=NC_008396:11526895..11531916
| + | * Similar intron/exon structural patterns were observed in the basic and hinge regions of their bZIP domains. |
| − | source=RiceChromosome03
| + | * Detailed sequence analysis has been done to identify additional conserved motifs outside the bZIP domain and to predict their DNA-binding site specificity as well as dimerization properties, which has helped classify them into different groups and subfamilies, respectively. |
| − | preset=GeneLocation
| + | <br> |
| − | </gbrowseImage2>| | + | '''''You can also add sub-section(s) at will.''''' |
| − | CDNA = <cdnaseq>atggcagatgctagttcgaggactgacacatcaacagtcctggataccgacgataagaatcagatggtagacgggcaaagtggagctattgtgccttctaattcatctgatcggtctgacagatctgacaagcccatggaccaaaaggtgttacgccggcttgctcaaaatcgtgaggctgcaagaaaaagtcggctgagaaaaaaggcatatgtacaacaattagagagcagtaagctgaaacttgcaagcttggagcaagagatcaataaagctcgccaacaaggaatttacatttcgagctcaggagaccaaactcatgctatgagtggaaatggagctatgacttttgatttagaatatgcccgttggttggaggaacaaaacaagcagataaatgagctgaggactgcagtaaatgctcatgcaagtgacagcgacctccgtctcattgtagatgggataatggcgcattacgatgagatattcaggctgaagggtgttgccgcaaaggctgatgtgtttcatatactttcaggcatgtggaaaacacctgctgaaaggtgcttcttgtggcttgggggttttcgttcctctgagcttctaaagcttcttgtgaatcagctcgagccattaactgagcagcagttgttgggactatcgaacctccaacagtcctctcagcaggctgaagatgctctatcacagggaatggaagcgttgcaacaatccttggcagatacgttggccgggtcccttggtccatcaggatcttcagggaacgtggcaaactacatgggtcaaatggctatggccatgggcaaacttgggacccttgagaatttcctccgtcaggctgacaatttgcggcagcagactttacatcaaatgcagcgaattctgacaatccgacaagctgcccgtgctctacttgcaatacatgattacttctcacgtttgcgtgccctgagttctctctggcttgctaggccacgggagtaa</cdnaseq>|
| + | |
| − | AA = <aaseq>MADASSRTDTSTVLDTDDKNQMVDGQSGAIVPSNSSDRSDRSDK PMDQKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQEINKARQQGIYISSS GDQTHAMSGNGAMTFDLEYARWLEEQNKQINELRTAVNAHASDSDLRLIVDGIMAHYD EIFRLKGVAAKADVFHILSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLL GLSNLQQSSQQAEDALSQGMEALQQSLADTLAGSLGPSGSSGNVANYMGQMAMAMGKL GTLENFLRQADNLRQQTLHQMQRILTIRQAARALLAIHDYFSRLRALSSLWLARPRE</aaseq>|
| + | ==Labs working on this gene== |
| − | DNA = <dnaseqindica>4626..4772#4115..4360#3699..3970#3547..3598#3365..3442#2223..2282#2056..2136#959..1024#tcgcctcgcctctctctcttccttctgaccaacccgacctcggcgcctccccccatttctctctctctctcttcgcgttgccgtctcgaccccgcctccaccgccgaagccgcccgaggcggcggccgccggcagctgggctcctccgaatccgaacacggcgggggctctcccctcgctccccacggcggttggcacctgctggctctcggtaagacctagttcccgctgatgagttagttgcttggagctagctagcgcggtctgcccgatcgattccgtccaattcccgcgcgcgtggtttgattgctcgcgaattcgatgtccgtagggcttgttttgatctcgcgctgtcgttgtagacgcctttggcttggggaggttggccgcgcggctgctttccgtagaagcttcgcaagctgttgtgtgagctacaccagctgggaggaggaggaggagggtagccctgagcttaggaactgacgctacgagctcggagatagctgtacttttttctttttttggttttgccttaaatcctctctcgtccttacttgtgtcgccctgtacttgggtagctgttgccgtcggaattattatctgctatatactgtttttaaggaaggtgctgtttggcatgctgcttgattttaattatttgatgaaccctggctgaatactatcatttgtttgattctttcgcagatccaacgtgtacagctaatttgatctgttggcgccttagctagaagtaaggatacggctgtattagttgggatattggttttgtcattgctggatgcacagccttttacggtgcgtttgctttgatgtagaggtggcgactctggcatctcagtgatcatagggcatttgaaggtggcctgcatccctgttacaagtaagggacaacaaagcaatttgttgtctctttatttggagctgggaagaacccggcatggcagatgctagttcgaggactgacacatcaacagtcctggataccgacgataagaatcagatggtaacttctcttttctctgtcactctgtttatgctcctggtgattgatcatttatgcaagctaggtacaaaagccaaaacaacataggcactgtatctagctgactgatagtctaataataggtcatggatagcaccataggtgcatatgatgagttgaacttcagttctatgataggattacttttattacaagatacaaagttctttttctatggttatttgaccctctcaagatgattgtacaaaaggaaacagtacagaaaatttattatgaacctctaaagttaacaggacaactactgttggacaatcagtaactactaatctggagtgccttgaaatgttatgtccatgcagcacctggttattctaaaatatttttatcaaataaaaggatgatacatgatttggtgctaaactgcctgggagtttcagaacttttgttgacatgtaacatgggttgacactaggcacatcattttgatatcaattttgtgaagaatttgattgttaaggtaaaaacttttaaaaagttgactttctaactatagaggcatcaggtactataaccaataatctactttggttactactacttccattaaactggccaactgtccatgccaatttctctgatttatacaaaaattatcccactttaatggagaaggcttgtcctattcagttgaaattggttgagcacctatgagtgatggttattgaattttgttatcttggttttgtgtgaggtgctattttggatgttttctatttaggtgtgacaagtacatggaaaaattccatctttgtaattttatagatgaacaaacatttattaaatttcacatgtaaagagttttatttttcgtatgtcctgctgaaatgcctataaatttcttgagtcgcctaaacaattatcagatatcatcaatccagcttctgtgtactgctactctaaagttctcattacactgcatgtgtgatacactgagatgtttgttctaattttgtcctaacaaatctttgcaggtagacgggcaaagtggagctattgtgccttctaattcatctgatcggtctgacagatctgacaagcccatggaccaaaaggtgttaatttatctcctatttcttgtgcagtgctacttatcctttcttaatgatggtatttaggaagtatgtttgttattctgtaggtgttacgccggcttgctcaaaatcgtgaggctgcaagaaaaagtcggctgagaaaaaaggtactataaccacaactttttgtcatattacctgtccttttttggacaatggaattatgacttctggtctccgcaccaactaaggatgcacatccatattatctctgtctaatgtctatgtgtgtgcatgcgagtatttttttttttgccttaaatttatttaggtgactttgggttgtttaatcagggaactgtaattgtatgatggtgcagttatgtgaaaatgccatggatgagcttatgggtgcacccgacggagagtcatgggtgtacagatgcacacccaactctactttttggttgcaaaatggtcattatatagcaggctagcagggatatttatattgtatgctaatagctattgaaaatactccatattcatgaccccaaataattttccttttcttttgggatgccggctctagtaggaatagtttctagaccttgattactcttctactctgtacaagtgtacagctgtcttagatatcgtgggtccaccactgggtgagttggtggatggctattatgcatatgcatgcttaagtaagcaactagctgacaatcatgttttcagtagcaatttagataagtccatgtttgtaattttgtaaatcagggagctaatactggtgcaactaatgggttggcctacaaatatgttttatttagcacttaaactgcctctttttttaatcgttttatgatattatgggaattacaaaagaattccagaaggtacttcccttccaagaaataactaacctgcaagggtctttgttttctttgatgtctttcttgttgaatgttctgggcattgaattactatgggctaactgggccaacaggtatacaagggtaactatacagatatgtagaaaacaccctctagaatagagtaaatacacaggtagctatgcagtacatgtaacatctataaccttgagaacttacattctaggcataagcaattgaatttcatgaattgaagcaaatgcattgtccttatccactattaatttctgtccacttcttgatttacccattgttattaaaaaacatacttcttattccttttcaaggcatatgtacaacaattagagagcagtaagctgaaacttgcaagcttggagcaagagatcaataaagctcgccaacaagtaagtttttcgtgcttgatgttgttaagtttcagtcgactgcatttttttgcttcactgtcttagatggtagctataaatgtcacctggatattgtactgcagggaatttacatttcgagctcaggagaccaaactcatgctatgagtggaaatggtaagatttgtgtacgcacagttgcacgcgtacctgctcacttgtgtgtactttagtgtttgttaggggttgaactgataagagtaagttttctctgcaggagctatgacttttgatttagaatatgcccgttggttggaggaacaaaacaagcagataaatgagctgaggactgcagtaaatgctcatgcaagtgacagcgacctccgtctcattgtagatgggataatggcgcattacgatgagatattcaggctgaagggtgttgccgcaaaggctgatgtgtttcatatactttcaggcatgtggaaaacacctgctgaaaggtgcttcttgtggcttgggggttttcgttcctctgagcttctaaaggtgcataagccgtgtgctgcatataagaaaattataaaagcacacctcagggatactttagtcctaaagaaaaaagtcatctaatatcttgttttaatgggtattgcatcgtaacactaatttcaatctcctgtaaaatttcagcttcttgtgaatcagctcgagccattaactgagcagcagttgttgggactatcgaacctccaacagtcctctcagcaggctgaagatgctctatcacagggaatggaagcgttgcaacaatccttggcagatacgttggccgggtcccttggtccatcaggatcttcagggaacgtggcaaactacatgggtcaaatggctatggccatgggcaaacttgggacccttgagaatttcctccgtcaggtaagcgtctttcaaaatcatgtggcatatttcaaactgtttcgaaattttctgttatctctgattctggcaagcatgcactcttgttattgctgtaacaggcaaaatatttttttgaaacctgatactagtttgctgatgacttgacgagttactgaaattttttgtgttccctttcttatttgtgcttttgatcccgagcaagttctgcaagttttagatgaccctttttttttctgaagagttctaatcttctttctgccaggctgacaatttgcggcagcagactttacatcaaatgcagcgaattctgacaatccgacaagctgcccgtgctctacttgcaatacatgattacttctcacgtttgcgtgccctgagttctctctggcttgctaggccacgggagtaacaacacatagggtgcatcaccgttaatgcttcatgaactgatctgggaggaacggcggagcgggactgattgcggatgcatttgcagaagattggtggctcagttccctcggcacaagttgtattgacaccttttggtttcatgttgtacctgatgttgtacaagtagggtaaagcttgtaacttgtaagttatggtgaatttatgattggcagattgtacaattgtattagcaataaaataaaaggtag</dnaseqindica>|
| + | * Interdisciplinary Centre for Plant Genomics and Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi 110021, India |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056480.1 RefSeq:Os03g0318600]|
| + | |
| − | }}
| + | ==References== |
| − | [[Category:Genes]] | + | <references> |
| − | [[Category:Japonica mRNA]]
| + | * <ref name="ref1"> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | Nijhawan A, Jain M, Tyagi AK, Khurana JP. Genomic survey and gene expression |
| − | [[Category:Japonica Genes]] | + | analysis of the basic leucine zipper transcription factor family in rice. Plant |
| − | [[Category:Japonica Chromosome 3]]
| + | Physiol. 2008 Feb;146(2):333-50. PubMed PMID: 18065552; PubMed Central PMCID: |
| − | [[Category:Chromosome 3]]
| + | PMC2245831. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
