Difference between revisions of "Os03g0356900"

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(Created page with "{{JaponicaGene| GeneName = Os03g0356900| Description = contains InterPro domain(s): IPR002627, IPR011593| Version = NM_001056676.2 GI:297600940 GeneID:4332870| Length = 34...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os03g0356900''''' was reported as '''''OsIPT2''''' in 2006 <ref name="ref1" /> by researchers from Japan.  
GeneName = Os03g0356900|
 
Description = contains InterPro domain(s): IPR002627, IPR011593|
 
Version = NM_001056676.2 GI:297600940 GeneID:4332870|
 
Length = 3401 bp|
 
Definition = Oryza sativa Japonica Group Os03g0356900, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os03g0356900''''' '''''<=>''''' '''''OsIPT2''''','''''IPT2'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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* Some phytohormones such as gibberellins (GAs) and cytokinins (CKs) are potential targets of the KNOTTED1-like homeobox (KNOX) protein.
AP = Chromosome 3:14347253..14350653|
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* The rice (Oryza sativa) genes for adenosine phosphate isopentenyltransferase (IPT), can catalyze the rate-limiting step of CK biosynthesis.
CDS = 14349473..14350450|
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* KNOX protein simultaneously decreases GA biosynthesis and increases de novo CK biosynthesis through the induction of OsIPT2 and OsIPT3 expression, and the resulting high-CK and low-GA condition is required for formation and maintenance of the meristem.
GCID = <gbrowseImage1>
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name=NC_008396:14347253..14350653
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===Phenotypic analysis===
source=RiceChromosome03
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* Phenotypes of '''''OsIPT''''' overexpressers resembled those of KNOX-overproducing transgenic rice, although '''''OsIPT''''' overexpressers did not form roots or ectopic meristems, both of which are observed in KNOX overproducers.
preset=GeneLocation
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</gbrowseImage1>|
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You can also add sub-section(s) at will.
GSID = <gbrowseImage2>
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name=NC_008396:14347253..14350653
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==Labs working on this gene==
source=RiceChromosome03
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* Field Production Science Center, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishi-Tokyo, Tokyo 188–0002, Japan (T.S.);
preset=GeneLocation
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* Institute of Physical and Chemical Research Plant Science Center, Yokohama, Kanagawa 230–0045, Japan (H.S., M.K.); 
</gbrowseImage2>|
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* Graduate School of Bioagricultural Sciences (H.N., Y.I., Y.S.)
CDNA = <cdnaseq>atggagtaccacgtcggcggtgtcatcggacagtcacccaagcccaaggtcgtcttcgtgctcggcgccaccgccaccggcaagtccaagctcgccatctccatcgccgagcggttcggcggcgaggtgatcaactccgacaagatccaggtgcacgacgggttccccatcatcacgaacaaggtcaccgaggaggagcgcgccggcgtcccccaccacctcctcggcgtcctccacccggacgccgacttcaccgccgaggacttccggcgcgaggcggccgccgccgtcgcccgcgtcctcgcggcgggccgcctccccgtcgtggccggcgggtcgaacacctacgtcgaggcgctggtggagggcggcggcggcgcgttccgcgcggcgcacgactgcctcttcctgtggaccgacgtcgcgccgggcctgctgcggtggtacaccgcggcgcgcgtggacgacatggtgcggcgcgggctggtgggcgaggcgcgcgccgggttcgtcgacggcgccggcgccgcggactactacacccgcggcgtgcgccgcgccatcgggatcccggagatgcacgggtacctcctggccgagcgctcgggcggcgaggcggccgacgacggcgagctcgccgccatgctcgacggcgccgtgcgcgagatcaaggccaacacctaccgcctcgccgcgacgcaggtggcgaagatccggcggctgagcgcgctggacgggtgggacgtgcggcgcgtggacgcgacggtggtggtggcgcgcatggcggagggggcgccgcacagggagacgtgggaggcggtggtgtggaagccgtgcgaggagatggtcggccgcttcctcgaggcgtccgccgccgtggatgacgatgacaatgccgccgccggttcgccggcggcgttggcaccgatgacggcggcgtgtcgcctgagggcgcagctggtgcagctgcaatactaa</cdnaseq>|
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* Bioscience and Biotechnology Center (Y.Y., M.M.), Nagoya University, Nagoya, Aichi 464–8601, Japan
AA = <aaseq>MEYHVGGVIGQSPKPKVVFVLGATATGKSKLAISIAERFGGEVI                    NSDKIQVHDGFPIITNKVTEEERAGVPHHLLGVLHPDADFTAEDFRREAAAAVARVLA                    AGRLPVVAGGSNTYVEALVEGGGGAFRAAHDCLFLWTDVAPGLLRWYTAARVDDMVRR                    GLVGEARAGFVDGAGAADYYTRGVRRAIGIPEMHGYLLAERSGGEAADDGELAAMLDG                    AVREIKANTYRLAATQVAKIRRLSALDGWDVRRVDATVVVARMAEGAPHRETWEAVVW                    KPCEEMVGRFLEASAAVDDDDNAAAGSPAALAPMTAACRLRAQLVQLQY</aaseq>|
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DNA = <dnaseqindica>2221..3198#tcgtcggaataaacctcacccctgtacaactccggccaccgattccggcgaccaagttggtacttgataaactccggcagctatcgattccgttccggcggccggctagcagctagctctgtggtcgatctcctcgcggtaggtgttaccctcttggttaatcaccgtccatttttcgtaatccagcttgaactgataagatgagtatagatgctttttgcttgcaaggttttgtgtcgcaatgctagtttctttttcttttttcttgttaatatccatttttctttttcttttatcaaaaaaaatatgtgggtgtaggggtggatctaggggggaaaaaagcaggggctaaaaaaaactagacaaagctccaacttatttttggcctttctgtatctatgtcggaaaattttggaggctcaagggtctctaataatccatatattagtagcgggcgctcaaaccccgtctccgtgatagatccatatatatgggtggtttttgtttgatctaaaaagatttttttttctttgtaatccttatgttgagcgatagatattttatttttatgtaagatatattagatatctaagttgaggctttttttaagggctaatatttttcattcacatagatctcaatgttattataatttttccatgtcatatataaacttaagaccgaactaatgcatcttgtttttacctttgacttttcattacttttcaataggacctaaaagggattagggagtcctaattgccctaggctttgtctttaccccttgtatgatgtgaacaccagacataggttcaataggaatgaatagtttgcggatacatatgagataatgttttgcgctatatgtcaaagttagaaggtggtgaacataaaacaaagttaaagtttcactgaataataactagcgacgatgaacataaagaaattattgaagtttaccctcaagaagtagtaatattaatgattgattttgttaattttgctagctagaatatgcatacaacagcagatgttatcatcctttttatttatacgtactgtcatccttttctcctttggtatagattggttttatgaagttgatggaaaattgaccacagatgagtttattattcattcatgaaccgtgaacttctcttaaaaaaagtaaaataaggaagttcaatgcgaataatctatatgggggattaattacttgtcaatgcttttcatgatatttaatgttttcgactgtaagattaacaaattgtgcagagatgtatttttcatgcatgataatttggaagtgcacccacattgttccatgaacttgcattgctagttttatgttaaattctcgttcacaacaaattaactagagacaattaattatcatgatatataggtaatttagcatcaaactgatcatttacaatcagcattactgtttttgaaaacaaaaaaaataaaaaaaaatgctatatcgttacaacggtggtttattttactaacatcatcatgacatcagcatgggatctaggtaccaaatactgttacctatgagtatcatgtatgataccccgatattagatatggttcctatgtttatcatgtctaatgctagtatcatataagtaccaaatttgtgccatgctggcgttatggtgatgccagaaataaagtattccattctggaatggtatagtgtcttctggtaatccttatttagaaaatgtattataaccatttaaatatagtatatgttccccttccatctcaaaatgtaaatgattttgggtagatgtaatctatagtccttaaaatgttagtagttctggtggtgtccattcccacaccatctctactactaccgtgtgagccccacaatctataccattacattatcttttaacgagtcctcccccgtttcaccgttggctctcagtacttggactaaataagtgtttgttaattgatttaataaattagaaactcaatttgttgtccgttacaaagcacaagctcttagctatcctaatattattaatctgaacaaacttatatcacatccatctaaaatctcgtatattatattttgggacgggggagtaagaatgatcgagtgcacgtacattttaggtcgtaaatttactatctttgcaaaaagtaattaacgatggcttatatacctcttctccggtgagcagctcaccttcatcaatggagtaccacgtcggcggtgtcatcggacagtcacccaagcccaaggtcgtcttcgtgctcggcgccaccgccaccggcaagtccaagctcgccatctccatcgccgagcggttcggcggcgaggtgatcaactccgacaagatccaggtgcacgacgggttccccatcatcacgaacaaggtcaccgaggaggagcgcgccggcgtcccccaccacctcctcggcgtcctccacccggacgccgacttcaccgccgaggacttccggcgcgaggcggccgccgccgtcgcccgcgtcctcgcggcgggccgcctccccgtcgtggccggcgggtcgaacacctacgtcgaggcgctggtggagggcggcggcggcgcgttccgcgcggcgcacgactgcctcttcctgtggaccgacgtcgcgccgggcctgctgcggtggtacaccgcggcgcgcgtggacgacatggtgcggcgcgggctggtgggcgaggcgcgcgccgggttcgtcgacggcgccggcgccgcggactactacacccgcggcgtgcgccgcgccatcgggatcccggagatgcacgggtacctcctggccgagcgctcgggcggcgaggcggccgacgacggcgagctcgccgccatgctcgacggcgccgtgcgcgagatcaaggccaacacctaccgcctcgccgcgacgcaggtggcgaagatccggcggctgagcgcgctggacgggtgggacgtgcggcgcgtggacgcgacggtggtggtggcgcgcatggcggagggggcgccgcacagggagacgtgggaggcggtggtgtggaagccgtgcgaggagatggtcggccgcttcctcgaggcgtccgccgccgtggatgacgatgacaatgccgccgccggttcgccggcggcgttggcaccgatgacggcggcgtgtcgcctgagggcgcagctggtgcagctgcaatactaattagaatggagtggcttggcgttggctagcgttagtgctactactataattaatatatatagtgcaagcagatcgcgtttgattagagtgacaattatatgtcgtcgaaagtacgttttgtgatggaagtaacatcatccagtcactataagtgggacccatatgtcatcagtttaattaaagagatgattttttttgcgggg</dnaseqindica>|
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==References==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001056676.2 RefSeq:Os03g0356900]|
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<references>
}}
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* <ref name="ref1">
[[Category:Genes]]
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Sakamoto T, Sakakibara H, Kojima M, Yamamoto Y, Nagasaki H, Inukai Y, Sato Y,
[[Category:Japonica mRNA]]
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Matsuoka M. Ectopic expression of KNOTTED1-like homeobox protein induces
[[Category:Oryza Sativa Japonica Group]]
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expression of cytokinin biosynthesis genes in rice. Plant Physiol. 2006
[[Category:Japonica Genes]]
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Sep;142(1):54-62. PubMed PMID: 16861569; PubMed Central PMCID: PMC1557621.
[[Category:Japonica Chromosome 3]]
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[[Category:Chromosome 3]]
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</ref>
 +
</references>
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

Latest revision as of 10:52, 2 March 2017

The rice Os03g0356900 was reported as OsIPT2 in 2006 [1] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os03g0356900 <=> OsIPT2,IPT2

Function

  • Some phytohormones such as gibberellins (GAs) and cytokinins (CKs) are potential targets of the KNOTTED1-like homeobox (KNOX) protein.
  • The rice (Oryza sativa) genes for adenosine phosphate isopentenyltransferase (IPT), can catalyze the rate-limiting step of CK biosynthesis.
  • KNOX protein simultaneously decreases GA biosynthesis and increases de novo CK biosynthesis through the induction of OsIPT2 and OsIPT3 expression, and the resulting high-CK and low-GA condition is required for formation and maintenance of the meristem.

Phenotypic analysis

  • Phenotypes of OsIPT overexpressers resembled those of KNOX-overproducing transgenic rice, although OsIPT overexpressers did not form roots or ectopic meristems, both of which are observed in KNOX overproducers.

You can also add sub-section(s) at will.

Labs working on this gene

  • Field Production Science Center, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishi-Tokyo, Tokyo 188–0002, Japan (T.S.);
  • Institute of Physical and Chemical Research Plant Science Center, Yokohama, Kanagawa 230–0045, Japan (H.S., M.K.);
  • Graduate School of Bioagricultural Sciences (H.N., Y.I., Y.S.)
  • Bioscience and Biotechnology Center (Y.Y., M.M.), Nagoya University, Nagoya, Aichi 464–8601, Japan

References

  1. Sakamoto T, Sakakibara H, Kojima M, Yamamoto Y, Nagasaki H, Inukai Y, Sato Y, Matsuoka M. Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice. Plant Physiol. 2006 Sep;142(1):54-62. PubMed PMID: 16861569; PubMed Central PMCID: PMC1557621.

Structured Information