Difference between revisions of "Os03g0694900"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os03g0694900| Description = Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)| Version = NM_001057508.1 GI:115454744 Ge...")
 
 
(One intermediate revision by one other user not shown)
Line 1: Line 1:
−
{{JaponicaGene|
+
Please input one-sentence summary here.
−
GeneName = Os03g0694900|
 
−
Description = Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)|
 
−
Version = NM_001057508.1 GI:115454744 GeneID:4333799|
 
−
Length = 7519 bp|
 
−
Definition = Oryza sativa Japonica Group Os03g0694900, complete gene.|
 
−
Source = Oryza sativa Japonica Group
 
  
−
  ORGANISM  Oryza sativa Japonica Group
+
==Annotated Information==
−
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
===Function===
−
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
Please input function information here.
−
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
 
−
|
+
===Expression===
−
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
+
Please input expression information here.
−
AP = Chromosome 3:28587296..28594814|
+
 
−
CDS = 28587659..28587739,28587921..28587980,28588099..28588268,28588367..28588439,28588562..28588627<br>,28588728..28588811,28589147..28589224,28589475..28589558,28589910..28589989<br>,28590152..28590209,28590301..28590603,28590693..28590863,28591437..28591627<br>,28591750..28592152,28592712..28592963,28593043..28593543,28593647..28593744<br>,28593866..28593965,28594188..28594333,28594439..28594604|
+
===Evolution===
−
GCID = <gbrowseImage1>
+
Please input evolution information here.
−
name=NC_008396:28587296..28594814
+
 
−
source=RiceChromosome03
+
You can also add sub-section(s) at will.
−
preset=GeneLocation
+
 
−
</gbrowseImage1>|
+
==Labs working on this gene==
−
GSID = <gbrowseImage2>
+
Please input related labs here.
−
name=NC_008396:28587296..28594814
+
 
−
source=RiceChromosome03
+
==References==
−
preset=GeneLocation
+
Please input cited references here.
−
</gbrowseImage2>|
+
 
−
CDNA = <cdnaseq>atgtccagcgttacccctgctgccgacgcgcagccactcgatgagaaagagctggagcggaagctgaagaaagatcagaaggcaaaagagaaagaggaaaaaaggcttaaggcgaaggcaaaggaggcggctaggctccaggcacaagcagcttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgagaatcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctcaaatggccaagcagtatagcccaactgctgttgagaaatcatggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagccaccatttgttatagttttgccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagaggattccatgatacgctggcggaggatgtcaggttataacactctgtgggttccaggagttgaccatgcaggaatcgctactcaggttgtagtggagaagaagcttatgcgtgaaaggaatttgacaaggcatgacatagggcgtgaagaatttgtatctgaagttctcaaatggaaagatgaatacgggggtaccatattgaatcaattgcgtaggcttggggcctcacttgattggtcccgcgagtgttttacaatggataaaccaagatcaaaggctgtaactgaagcttttgtcaggttgtacaaacaaggcctgatatatagggattatcgcctcgtgaattgggattgcacccttcgaacagcaatttctgacgtagaggttgattatctagagattaaagaggaaactatgttaaaggttcctggttataatacaactgtacaattcggtgtgttgatctcttttgcatatccacttgaggaaggattgggtgagattattgtcgcaacaacaagaatcgaaacaatgcttggggatacagccattgctgttcaccctgaggatggcagatacaagcatctgcatggtaggtatgcaatccatcccttcaatggccgaaagctcaaaataatctgtgatgctgagttagtggatcccactttcggtactggggctgtcaagattacacctgcccatgatccaaatgattttgaggttggaaagcgacacaaccttgagttcatcaatatcttcacagatgatggaaaaataaacaacaatggaggtgcacaatttgtaggaattccaagatttactgctcgagttgctgttattgaggcactgaaggcaaagggcttgtacaaggagacaaagaagaacgaaatgagtttgggtgtttgttcaagaactaatgatgtggtggagcctatgataaaaccccaatggtttgttaattgcaataccatggcacaagcaggtattgatgctgtaaggtccaaaagaattgagattattccacaacagtatgagcaagactggtatagatggcttgcaaatatacgtgattggtgtatttcgaggcagctttggtggggacatcgcgttcctgcttggtatgttatactagaagatgatcaagagaaaattctgggttctgctaatggccgttggattgttgctagaaacgaaagtgaagcaaacctggaggcacagcaaaagtatcctgggaagaaattcgagttacatcaagatcctgatgtgttggatacatggttttcatctggtctcttcccattaaccgtacttggttggccagatgatacagctgaccttaaagctttctaccctggttcggtgctagaaactggacatgacattatcttcttttgggtagcacggatggtgatgatggggatgcaacttggtggcgatgtgccatttgagaaggtttatttgcaccctatgatacgtgatgctcatggacgcaaaatgtccaagtcgcttggtaatgtcattgatcccgttgatgtgataaatggcatttcactggatggtctcctcaaacgtttgaaagaaggcaatctagatccaaatgaattgaacattgcaacagaagggaagaagaaggattttcctgatggcattgctgaatgtggtaccgatgctctccgttttgcactggtttcttacacttcgcagtctgacaagataaacctggatatcaaacgagttgttggatatcgacagtggtgcaataaattatggaatgccattcgttttgcaatgggcaagcttggcaatcattacactccccctgcaactatttctgtaactacaatgccacccatatgcaaatggatattgtcagtacttaataaagctattggcaaaactgtcacctcgttagaagcatacaaattttctgatgctacatctgctatatactcgtggtggcagtaccaactatgtgatgtgttcatagaagctataaagccttacttcttcaatgactctcaagagtttgaatcagcaagagctgcctctagagatgccttatgggtttgcttagacactggtttgcgcttgctccacccattcatgccttatgttacagaagagctctggcagcgtcttcctcagcctaaagattcttgtcggaaagattccattatggtatcagagtacccatctgttgttaaggaatggacggatgataaacttgaaaatgagatagatattgccttagatactatcaacaaactaagatctctgaagccaccatctgatacaaatgagagacgacctgcttttgcactttgccgaggccaagagattactgccaccattcagtgttatcagtctctagttgtgtctctttcttccacatcatctctaaagatcctgacagagaatgatgaaacgccacctgactgtgcaacagctgttgtaaacaaagatttgtctgtataccttcaactccaaggagctctcaatgcagaagttgagcttgaaaagctgaggaaaaagagagaagaaattcaaaagctccaacacgcactgtcacagaaaatggaagcttctggttacaaagagaaggctccacagaatgtccaggaggaggacatgagaaaactcactagtttttttgaacagctagagattatcagtgaagctgaaaagaagctagatgcaaaaactggcaataattga</cdnaseq>|
+
==Structured Information==
−
AA = <aaseq>MSSVTPAADAQPLDEKELERKLKKDQKAKEKEEKRLKAKAKEAA                    RLQAQAASDGPKKSEKKQRKKAVEDENPEDFIDPDTPHGQKKFLASQMAKQYSPTAVE                    KSWYSWWESSGYFGADAASSKPPFVIVLPPPNVTGALHIGHALTVAIEDSMIRWRRMS                    GYNTLWVPGVDHAGIATQVVVEKKLMRERNLTRHDIGREEFVSEVLKWKDEYGGTILN                    QLRRLGASLDWSRECFTMDKPRSKAVTEAFVRLYKQGLIYRDYRLVNWDCTLRTAISD                    VEVDYLEIKEETMLKVPGYNTTVQFGVLISFAYPLEEGLGEIIVATTRIETMLGDTAI                    AVHPEDGRYKHLHGRYAIHPFNGRKLKIICDAELVDPTFGTGAVKITPAHDPNDFEVG                    KRHNLEFINIFTDDGKINNNGGAQFVGIPRFTARVAVIEALKAKGLYKETKKNEMSLG                    VCSRTNDVVEPMIKPQWFVNCNTMAQAGIDAVRSKRIEIIPQQYEQDWYRWLANIRDW                    CISRQLWWGHRVPAWYVILEDDQEKILGSANGRWIVARNESEANLEAQQKYPGKKFEL                    HQDPDVLDTWFSSGLFPLTVLGWPDDTADLKAFYPGSVLETGHDIIFFWVARMVMMGM                    QLGGDVPFEKVYLHPMIRDAHGRKMSKSLGNVIDPVDVINGISLDGLLKRLKEGNLDP                    NELNIATEGKKKDFPDGIAECGTDALRFALVSYTSQSDKINLDIKRVVGYRQWCNKLW                    NAIRFAMGKLGNHYTPPATISVTTMPPICKWILSVLNKAIGKTVTSLEAYKFSDATSA                    IYSWWQYQLCDVFIEAIKPYFFNDSQEFESARAASRDALWVCLDTGLRLLHPFMPYVT                    EELWQRLPQPKDSCRKDSIMVSEYPSVVKEWTDDKLENEIDIALDTINKLRSLKPPSD                    TNERRPAFALCRGQEITATIQCYQSLVVSLSSTSSLKILTENDETPPDCATAVVNKDL                    SVYLQLQGALNAEVELEKLRKKREEIQKLQHALSQKMEASGYKEKAPQNVQEEDMRKL                    TSFFEQLEIISEAEKKLDAKTGNN</aaseq>|
+
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
−
DNA = <dnaseqindica>364..444#626..685#804..973#1072..1144#1267..1332#1433..1516#1852..1929#2180..2263#2615..2694#2857..2914#3006..3308#3398..3568#4142..4332#4455..4857#5417..5668#5748..6248#6352..6449#6571..6670#6893..7038#7144..7309#acacgttcgctcttaccccaaaacccttcgccctcttgctgctgcgccgccgccgcacgcgattcctcctgctcccgtcggcggaagctaatcccccaccatcgcctgcctgccgcgtgcgccgatctccatccttgagcagcagcgcgcgggcgtcctgctgcttccgccgcatcctcgctctccggtgagcatccgtcctcttcgtcatcccatccctccctacccacacacctttttctcggattcgcgttaaccctagcttctcttctagcaccggaagcttttcaatttgccttaactttactaatgacagtttatttttgttaatcaaaaagtttggggttgttcaagtgaagcaccatgtccagcgttacccctgctgccgacgcgcagccactcgatgagaaagagctggagcggaagctgaagaaagatcagaaggtatttgatcaaacgctatcttcttaattatattcatttctttggcctagattacttctctgtcaccagctggactcaaaatggtcattgattttcacaatgataaaatccaaggtgttcactactattgcacatttgcacatgacaaaagtcactgatgtgtgaactgttctgcgcacaggcaaaagagaaagaggaaaaaaggcttaaggcgaaggcaaaggaggcggctaggctccaggtttgaacatgattagtgaatttctatgtgactgaatgtaaaaccagatatctactcggtgaaatgctctgtagagatgggtcttcttctattttcgtgctgatttacttttatgtaggcacaagcagcttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgagaatcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctcaaatggccaagcagtatagcccaactgctgttgagaaatcgtaagatgctaccatgtttttctctatcttataattcatacaataagaaaggcctactgaacttctgcatgcatttgtttcctcccaccttaatgcagatggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagccaccatttgttatagtaagtggatcatacttcgaagtttagagagctgcttttcatggaatcaattatgtattttctacatgcagcaaattaccccatatatgttgctgccaaacagctaaattatttcttttcaggttttgccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagaggtacatcattattcttgtggagacatatccatagtaacattatcgatgttagctaaacattggataatgattttaacgtccctgcatttaagcaatgcaggattccatgatacgctggcggaggatgtcaggttataacactctgtgggttccaggagttgaccatgcaggaatcgctactcaggtctatatcttcgatttgtttcaccatcatctgaaatttatcttacgaaacattcatctgcagataatatagattacttgatatatctttgtcgctattactttctattaaacatactaacaatttggtcagtcgccaatgggcaaacacatggcagcattggttatattaatttacaaaagctccaaatggaatgctgtcctttttctaaaatatcttttctcaaaataaattgtcaacacatgttgctcaattttgttcaccgtatcgttatttcccctctaaaccaataatcatttttgcctcttaaatttctctgatctcatgtatatcaggttgtagtggagaagaagcttatgcgtgaaaggaatttgacaaggcatgacatagggcgtgaagaatttgtatctgaagtaagcattatttttcctgaacaaaattttatgcctgttaactctgtattcttttgattataaatgagcaatttattaccattatcatatgaatatcgaaatggatccatgttgttagacgttatggaaattgtggtgagcatataatattatgcattcaaaggatagtgttctttacttgtttagtttcactccccatgtgtctacctttctcttgtttattctgttttatctatcatattctggacaggttctcaaatggaaagatgaatacgggggtaccatattgaatcaattgcgtaggcttggggcctcacttgattggtcccgcgaggtacatttactactttctgtagttaggagatagtatgagtatacttatgacaatacttgagcaataagttattttatactacctccatcctagaatataagaagttttagagttggacacggttattaagaaaataagtagaattaaatagaaagagcttgtgattggttaagaagtgaaggtaggtgggaaaagtgaatggtggagggttgtgattggttgggaagggaatgttggtggagaagttgttatattttgggacaaatcctgagtgctaaaagttgttatattttgggacggagggagtagttcttattctgaatattaacttcccctctacctttgcaacagtgttttacaatggataaaccaagatcaaaggctgtaactgaagcttttgtcaggttgtacaaacaaggcctgatatataggtcagttccatcaccttattttgttgttagagttgaacatttgttccttctattgattgcaccattatgtttttacctgtttgcttctatacagttgattttggttgttgtttgccatcttagttttatttttcctcttatggatggcatgcttctatacagggattatcgcctcgtgaattgggattgcacccttcgaacagcaatttctgacgtagaggttgttgagactttttattgtgtatgatggtggttgcaattgcacgcataactaaaattgatctgtttgtttgaaatttctgttttgttaggttgattatctagagattaaagaggaaactatgttaaaggttcctggttataatacaactgtacaattcggtgtgttgatctcttttgcatatccacttgaggaaggattgggtgagattattgtcgcaacaacaagaatcgaaacaatgcttggggatacagccattgctgttcaccctgaggatggcagatacaagcatctgcatggtaggtatgcaatccatcccttcaatggccgaaagctcaaaataatctgtgatgctgagttagtggatcccactttcggtactggggctgtcaaggtaggagctgatgctgacttcttgactatctctgtttaatttaatctacttggatcttctgcatacacgtttgcttatcttatatgcagattacacctgcccatgatccaaatgattttgaggttggaaagcgacacaaccttgagttcatcaatatcttcacagatgatggaaaaataaacaacaatggaggtgcacaatttgtaggaattccaagatttactgctcgagttgctgttattgaggcactgaaggcaaaggtactgctagatttgctaaatcatcctttcccagcatcttgtgatccaatctctaaacatttctttggactattgctggtttgttatggatttatgcaccattgcaaaatagtatcagagtgaaaagcacttaccatgaatgttttagggcattcttgcatatttatatttttctataactcagtccaaagaataaatctgatagtgtaagcgataaggagttagtggaatatagcatgaaggtttcctacttttgacattgtcctgtcccccatcctctctcatttttctattagtgggtctcttagcacagtattacttttatgagaaataagatgtcttggtttctgtagacatcagtggttctattaaatctcgaatcctgcattttgttaatgcttttatggtcgggtatctataacaactatgtgtaaaacagcattgaactgtttatgtaaccggataatctcaccaattttgttctgtcagctttctttccatttggtttgctgtgggttttgttcaagtattattgaagcttgattcttaccactttatgttctgcaatataagggcttgtacaaggagacaaagaagaacgaaatgagtttgggtgtttgttcaagaactaatgatgtggtggagcctatgataaaaccccaatggtttgttaattgcaataccatggcacaagcaggtattgatgctgtaaggtccaaaagaattgagattattccacaacagtatgagcaagactggtataggtaatgtctatcaccttctcatttgtcagttgagaattatctcacctattattgcaaatggcatcatatataggcaatggaattagaaggaaaataatccatccattgtcatgcccttacagatggcttgcaaatatacgtgattggtgtatttcgaggcagctttggtggggacatcgcgttcctgcttggtatgttatactagaagatgatcaagagaaaattctgggttctgctaatggccgttggattgttgctagaaacgaaagtgaagcaaacctggaggcacagcaaaagtatcctgggaagaaattcgagttacatcaagatcctgatgtgttggatacatggttttcatctggtctcttcccattaaccgtacttggttggccagatgatacagctgaccttaaagctttctaccctggttcggtgctagaaactggacatgacattatcttcttttgggtagcacggatggtgatgatggggatgcaacttggtggcgatgtgccatttgagaaggtaatggcaattgcatggatgtgcttcctgtgccattaaaactgtattataacattttagcagttcaatctatacatttcatccagtttttacactattgtctttcatacaacagtataattctgatcgaaattcaaacatgaaaaaatctatcttcaaattgctagctgtggatgttataatgaaggagaagtctatttgagactacttcgttcgtgagcatcattattttctgctctgccatttgtcttcaataggtcacactaatttcatctgaatgtactctagtagcttgttaattttggacatatattacatttttgtcaacatgctacttcgactaggcacaatacatggttgattgggaactatcctcagctgaacacacaagtttaccttttatttcagattttaaaatctattatttttcttagtttgatttttgaattacttcgtaacctaagacgtgtttaactgcaactagaagtattacttacactggtaagtgaggcgattctagctgaacacgcttaaattggggctctgctctcttgctcaggtttatttgcaccctatgatacgtgatgctcatggacgcaaaatgtccaagtcgcttggtaatgtcattgatcccgttgatgtgataaatggcatttcactggatggtctcctcaaacgtttgaaagaaggcaatctagatccaaatgaattgaacattgcaacagaagggaagaagaaggattttcctgatggcattgctgaatgtggtaccgatgctctccgttttgcactggtttcttacacttcgcaggttgtaattacacccatttcagtttctgttgtattatgcttgcaattcatctcctatggatttctctcttggttcacagtctgacaagataaacctggatatcaaacgagttgttggatatcgacagtggtgcaataaattatggaatgccattcgttttgcaatgggcaagcttggcaatcattacactccccctgcaactatttctgtaactacaatgccacccatatgcaaatggatattgtcagtacttaataaagctattggcaaaactgtcacctcgttagaagcatacaaattttctgatgctacatctgctatatactcgtggtggcagtaccaactatgtgatgtgttcatagaagctataaagccttacttcttcaatgactctcaagagtttgaatcagcaagagctgcctctagagatgccttatgggtttgcttagacactggtttgcgcttgctccacccattcatgccttatgttacagaagagctctggcagcgtcttcctcagcctaaagattcttgtcggaaagattccattatggtatcagagtacccatctgttgttaaggtattatcttaaagaagacataatttgtgtttggaaatataattgaaccaatatataagatagcacacatttaccaatggagacatatctttctttatgacaggaatggacggatgataaacttgaaaatgagatagatattgccttagatactatcaacaaactaagatctctgaagccaccatctgatacaaatgagaggtgcgtgtataatcatctatcttaatttgtgctattcctgtaatatacatgatgtgttgtcagattcattttgttcaatacgaaagcgtaatatatctcttgcttatttttccacaaacagacgacctgcttttgcactttgccgaggccaagagattactgccaccattcagtgttatcagtctctagttgtgtctctttcttccacatcatctctaaaggttctgccttaaacttctgtactattatgtatgcatgcatttctctattagcaaaatatttagattgaaatttatactgaaacctgggatggagtattattagtttagtacctcataaaacttatgtttcttaccatccatgcgtttgaaaattccccaaaagtcctgcctgagttgaaagatcttgacagaagaactgatctgatatttgaaaccattcagatcctgacagagaatgatgaaacgccacctgactgtgcaacagctgttgtaaacaaagatttgtctgtataccttcaactccaaggagctctcaatgcagaagttgagcttgaaaagctgaggaaaaagagagaagaaattcaaaagtaagcgtacttatgttatctcaaaatatcttgaatgaagatttgcctatgtttcactgttcccctgcgctagaaggatataacttactattaccatgcacgcaggctccaacacgcactgtcacagaaaatggaagcttctggttacaaagagaaggctccacagaatgtccaggaggaggacatgagaaaactcactagtttttttgaacagctagagattatcagtgaagctgaaaagaagctagatgcaaaaactggcaataattgacccagaaatctctgatgtgattttgaagatgcacatttgttgaagtttatctcaaattttttgcatggttaccttaatcatacctgaatgcccaggtactcatttttatattttgtagcttgaagagtatattcacagcattatacttttgtagtttttggttgtccaatcttccgtttgaaaatattttttgtggtgttgatttttctt</dnaseqindica>|
 
−
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057508.1 RefSeq:Os03g0694900]|
 
−
}}
 
−
[[Category:Genes]]
 
−
[[Category:Japonica mRNA]]
 
−
[[Category:Oryza Sativa Japonica Group]]
 
−
[[Category:Japonica Genes]]
 
−
[[Category:Japonica Chromosome 3]]
 
−
[[Category:Chromosome 3]]
 

Latest revision as of 07:27, 14 May 2015

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information