Difference between revisions of "Os03g0701800"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os03g0701800| Description = Phosphatidylinositol-4-phosphate 5-kinase family protein| Version = NM_001057540.1 GI:115454808 GeneID:4333833| Leng...")
 
(Annotated Information)
 
(7 intermediate revisions by 3 users not shown)
Line 1: Line 1:
{{JaponicaGene|
+
The rice '''Os03g0701800''' was reported as '''OsPIPK1''' in 2004 <ref name="ref1" /> by researchers from the China.
GeneName = Os03g0701800|
+
<br>
Description = Phosphatidylinositol-4-phosphate 5-kinase family protein|
+
==Annotated Information==
Version = NM_001057540.1 GI:115454808 GeneID:4333833|
+
===Gene Symbol===
Length = 5724 bp|
+
*'''Os03g0701800 <=> OsPIPK1'''
Definition = Oryza sativa Japonica Group Os03g0701800, complete gene.|
+
<br>
Source = Oryza sativa Japonica Group
+
===Function===
 +
*OsPIPK1 is involved in rice heading through regulation of floral induction genes, signaling and metabolic pathways.
 +
*Encoding a 792-aa putative phosphatidylinositol 4-phosphate 5-kinase (PIPK)
 +
<br>
  
  ORGANISM  Oryza sativa Japonica Group
+
===Expression===
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
*OsPIPK1 was expressed almost constitutively in roots, shoots, stems, leaves and flowers, and upregulated following treatment with plant hormones or application of various stresses.
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
<br>
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
 
|
+
==Labs working on this gene==
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
+
*National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai;
AP = Chromosome 3:28940657..28946380|
+
*Institutes for Biological Sciences (SiBS), Chinese Academy of Sciences;
CDS = 28940657..28940709,28941099..28941137,28941440..28942489,28943061..28943228,28943563..28943728<br>,28943905..28944015,28944103..28944283,28944801..28944962,28945157..28945325<br>,28946070..28946349|
+
*Partner Group of Max-PlanckInstitute of Molecular Plant Physiology (MPI-MP) on ‘‘Plant Molecular Physiology and Signal Transduction’’, 300 Fenglin Road, 200032 Shanghai, China
GCID = <gbrowseImage1>
+
<br>
name=NC_008396:28940657..28946380
+
==References==
source=RiceChromosome03
+
<references>
preset=GeneLocation
+
<ref name="ref1">
</gbrowseImage1>|
+
OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes
GSID = <gbrowseImage2>
+
</ref>
name=NC_008396:28940657..28946380
+
 
source=RiceChromosome03
+
</references>
preset=GeneLocation
+
<br>
</gbrowseImage2>|
+
==Structured Information==
CDNA = <cdnaseq>atgccggggctccacgtggtctccttcctcgttgtgctactgctgcagctgagatcttctggaatgcatcttgtggcttctgagctattctggggtaatacccttccaaatggggacatctacgtggggagcttcgatgggttagtccctcatggaccgggaaagtatatgtggacagatggagctctttatgatggtgagtgggacaagagtaaaatgaccgggagaggactaattcagtggccttctggtgcatcctatgaaggtgacttccgtggaggtttcattgatggagcaggcactttcaagggagttgatggctcagtttacaaaggttcttggaggatgaacaagaagcatggtatggggacaatggtttactctaactccgacacttatgaaggtttctggaatgaaggtttacctgatgaatttggtaaatacacatgggctgatggcaacgtatacattggaagatggaaatcaggcaaaatgaatggcagcggggtaatgcagtggataaatggtgatactcttgactgtaattggctcaatggcctggctcatggcaaaggttactgcaaatatgcatctggggcttgctacattggtacatgggatagaggactaaaggatggccatggtacattttatcaacctggaagcaaaattccttgtaaccttgaagtttctgactgtctaacaagtcatgatggtacaagtgcttcaagttctagtaatgaaaagatcactattggactgttatttctattgcaaaaactgtgcaagaattggaggttgcgtaggtttcttcatcggcccagacgtatttcaaatggtaccacaccagttttcgatgataattctggaagccatctatgccaagatgtatcaagtaaatcattttcagctgatgatcagtgtctacaagacagtgaagttgataaagattcggtttatgaacgggaatacgtacaaggagtgcttatcatggaacaaccaaaaaacgaagattcaagaatgtcggagagcggtatagcacaagaaaataactgggagaaacaagctaaaggaccaatggagactatttacaagggccataggagctattatctaatgcttaacttgcaacttggcatcaggtatactgtaggtaaaattacccctgtgcctttgcgtgaagttcgttcaaatgattttggacctcgagcacgaataaaaatgtacttcccttgtgagggatcccagtatacccctccgcactactctgtcgatttcttttggaaagactattgtccgatggtcttccggaatcttcgagaaatgtttcatatcgatgctgcagattacatgatgtctatatgtggtggtgatagtctaaaggagctttcttcacctgggaaaagtggcagcattttctatctttctcaagatgaacgttttgttataaaaacattgaggaaaactgagctgaagatactattgaagatgcttccaaagtattacaatcatgtcaaagcttatgataatacgctcattacaaaattctttggcgtgcacaggattactctgaaacctggaagaaaggtccgttttgttgtcatgggaaatatgttttgtactgaactgcgaattcatcgtaagtatgacttaaagggctctacacaaggccgatcaacaaagaagcaaaatataaatgagaacacaacactaaaggaccttgacctatcatatgtttttcacgtggataaaccatggagggaggcacttttcaggcagatagctcttgattgtatgttcctggaatcccaatctataattgactatagcatgctattgggaatccatttccgagctcccaatcacctgaagcgtatcacatcatgtcagaacgctcttgaaagtactggaatttcagctgaaacggaatgtagtgttgcactgcatcatgaggagacaatttcttcaaagggatttctactagttgctgctgatgagccaggtccagcagtacgtggttcgcacataagaggaagcatggttagggcagcagaaggtggttatgaagaagttgatcttgttttgccaggcactggaaggttccgtgttcagctaggggtgaatatgccagctcgagctcggaaagtgcaagaggacgtgaacgtagaagtagaaaacagggacaccattgaagagtatgatgttgtcctataccttggtatcatcgacatactacaagagtataatgtgtccaaaagagttgagcatgctgtcaaatcactaaaattcgaccctctttcgatatcagctgttgatccaaatttgtattcgagacgatttataagtttcttggagaaggttttccccgagcaagattga</cdnaseq>|
+
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
AA = <aaseq>MPGLHVVSFLVVLLLQLRSSGMHLVASELFWGNTLPNGDIYVGS                    FDGLVPHGPGKYMWTDGALYDGEWDKSKMTGRGLIQWPSGASYEGDFRGGFIDGAGTF                    KGVDGSVYKGSWRMNKKHGMGTMVYSNSDTYEGFWNEGLPDEFGKYTWADGNVYIGRW                    KSGKMNGSGVMQWINGDTLDCNWLNGLAHGKGYCKYASGACYIGTWDRGLKDGHGTFY                    QPGSKIPCNLEVSDCLTSHDGTSASSSSNEKITIGLLFLLQKLCKNWRLRRFLHRPRR                    ISNGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVDKDSVYEREYVQGVLIMEQP                    KNEDSRMSESGIAQENNWEKQAKGPMETIYKGHRSYYLMLNLQLGIRYTVGKITPVPL                    REVRSNDFGPRARIKMYFPCEGSQYTPPHYSVDFFWKDYCPMVFRNLREMFHIDAADY                    MMSICGGDSLKELSSPGKSGSIFYLSQDERFVIKTLRKTELKILLKMLPKYYNHVKAY                    DNTLITKFFGVHRITLKPGRKVRFVVMGNMFCTELRIHRKYDLKGSTQGRSTKKQNIN                    ENTTLKDLDLSYVFHVDKPWREALFRQIALDCMFLESQSIIDYSMLLGIHFRAPNHLK                    RITSCQNALESTGISAETECSVALHHEETISSKGFLLVAADEPGPAVRGSHIRGSMVR                    AAEGGYEEVDLVLPGTGRFRVQLGVNMPARARKVQEDVNVEVENRDTIEEYDVVLYLG                    IIDILQEYNVSKRVEHAVKSLKFDPLSISAVDPNLYSRRFISFLEKVFPEQD</aaseq>|
 
DNA = <dnaseqindica>1..53#443..481#784..1833#2405..2572#2907..3072#3249..3359#3447..3627#4145..4306#4501..4669#5414..5693#atgccggggctccacgtggtctccttcctcgttgtgctactgctgcagctgaggtacgttcttgcttgcttggattggcgcggtgatctggaaggccgcttgcgctgtaaccaggagtcgttctgggtagcttgatctgtcttgttgatgcgagctcgagatgatgctcttctgggagcagcgtttatccggtttgcttgaacagtacaagaggatatttagttttctctatttgctttttgtcactttgagctgggctagtgtgattgcaaagtttgcaactgctttcagttgtacgtggtaacggaaatctgctttgctgaaggcattagagttgttatgtctgcgatgtatttcgatgtatctgggagattaaacctgttttcggtcagaattggttatgctcgaatactggatcatagtttttgctgccttgtttcagatcttctggaatgcatcttgtggcttctgagctattctggtaaaatcttgacatggcccgagcagagacaagcaaggggagcatccagaggtgtgataattctcgtgtctatctctgcgtattcttcatttttttttcttggtaggaattacaagtgcttcatcgtgttcttcccacatattgaaaagcacattaaaatcagcgcaaagtttgcaatcatccactgcccccactctccagctgtccagcactaattgcgttgctttacgattgggcaatttagttttgcaagcaccacacaatgtaatttgaatctcatatatattttttattctggctaggggtaatacccttccaaatggggacatctacgtggggagcttcgatgggttagtccctcatggaccgggaaagtatatgtggacagatggagctctttatgatggtgagtgggacaagagtaaaatgaccgggagaggactaattcagtggccttctggtgcatcctatgaaggtgacttccgtggaggtttcattgatggagcaggcactttcaagggagttgatggctcagtttacaaaggttcttggaggatgaacaagaagcatggtatggggacaatggtttactctaactccgacacttatgaaggtttctggaatgaaggtttacctgatgaatttggtaaatacacatgggctgatggcaacgtatacattggaagatggaaatcaggcaaaatgaatggcagcggggtaatgcagtggataaatggtgatactcttgactgtaattggctcaatggcctggctcatggcaaaggttactgcaaatatgcatctggggcttgctacattggtacatgggatagaggactaaaggatggccatggtacattttatcaacctggaagcaaaattccttgtaaccttgaagtttctgactgtctaacaagtcatgatggtacaagtgcttcaagttctagtaatgaaaagatcactattggactgttatttctattgcaaaaactgtgcaagaattggaggttgcgtaggtttcttcatcggcccagacgtatttcaaatggtaccacaccagttttcgatgataattctggaagccatctatgccaagatgtatcaagtaaatcattttcagctgatgatcagtgtctacaagacagtgaagttgataaagattcggtttatgaacgggaatacgtacaaggagtgcttatcatggaacaaccaaaaaacgaagattcaagaatgtcggagagcggtatagcacaagaaaataactgggagaaacaagctaaaggaccaatggagactatttacaagggccataggagctattatctaatgcttaacttgcaacttggcatcaggtaagcttcattgtatgaatgcatcattgtttgctatacaagctttggagggttacactcagtgcttattatattttctggtttgttctggatatatccatttaggacaagggcaccttccatttagatcgatacatacgtgtaaagcaaactcttttttgacaattcaagcataaattagtgactgaagaatcaataatcatttcagtggggaaaaattaaccaccagttagaatgttctcactatgagtgacaacaaaagtagtttcttctttcgggaaaaagtgccttctctttttgaaaaatgacataagtagttgtattttgatatggagggagtatgtcataatgcatctagtcacgagccatctgttaattttttactagcatgttatttgtcttatcataatagtgattggatggtataatagccatattttatgaaaaacatcgattacctcatgaaatataattttttttatgttattttttatgtttacctcacgacatgtaactagttgatgttctttttaatgattaccccatttgactatacagtacttctatgcaggtatactgtaggtaaaattacccctgtgcctttgcgtgaagttcgttcaaatgattttggacctcgagcacgaataaaaatgtacttcccttgtgagggatcccagtatacccctccgcactactctgtcgatttcttttggaaagactattgtccgatggtcttccggtatatctctttccaatcttctcattgtgcgatagtctagtacttcatactgttcttttattatatcatctgattgtattacataggtggttcacgcattctgtactgaacatgggtggttgctcctctgtggttcacccctcccttgttaactgtaggaaattgcaaccatgatcttatgtatatatatgctatcactatcatattttcagataacactgcaggatgatacagacattgtttagaaatgcatcgacttgaaagttcgatcaattctgtcaattgttcttgtaattttctccatatcttattagctcataatttactctaccaggaatcttcgagaaatgtttcatatcgatgctgcagattacatgatgtctatatgtggtggtgatagtctaaaggagctttcttcacctgggaaaagtggcagcattttctatctttctcaagatgaacgttttgttataaaaacattgaggaaaactgagctgaaggtatgacccaccctcaatttttttcttgcaataacaatagtgttatttgttaattaaaaatgactaaaactgagctttacaagaacaacaaagatttgtgctaaaaaccgtgtatatccttgttaagtgataagatatgcctactgcagattggtttgatgtaatacgtgctgcagatactattgaagatgcttccaaagtattacaatcatgtcaaagcttatgataatacgctcattacaaaattctttggcgtgcacaggattactctgaaacctggaagaaaggtacattatcatatcatactgttgtgttgaatgttgttgtctatttgtacacatttgctatattaattctatgtatggtgttaataggtccgttttgttgtcatgggaaatatgttttgtactgaactgcgaattcatcgtaagtatgacttaaagggctctacacaaggccgatcaacaaagaagcaaaatataaatgagaacacaacactaaaggaccttgacctatcatatgtttttcacgtggataaaccatggagggaggcacttttcaggcaaattgctactttcttgctcctcttttttctgaacatcttactgtcgtctttcatggttttgtctatattggcttgaagtccaggttccataacttaccgtttatgatgttacttctggagattgtgttcactgggtagtcccttctggaaaattaaaaagaacagtagatttaaatgacttgtgcagattcctgcttcagtcccatgattggtggacatcaaaattattttctactattttgatattgattcttatcctattcttgagatctgaagaatacttaagatggacaatttttatttatactatagcaataaatagatttttttaaatataaacaactagattaaagaggcaaaccagattttaagcagtgtccgaccatgcatacaagagattgaattccagctgtctagttcagttttgcatattactgctccatttctgctgtgctatttttcttaacatggttgacgatgatatcttgagagccaacagttgtactattttcaggcagatagctcttgattgtatgttcctggaatcccaatctataattgactatagcatgctattgggaatccatttccgagctcccaatcacctgaagcgtatcacatcatgtcagaacgctcttgaaagtactggaatttcagctgaaacggaatgtacgtactaaaccttaagtacatctgagttctctttattatattcctctgaaaatttgtccttttactaaatctgaagtcaggactacaccagattctttatatcattacatcaaccaattgcctatcttcagcttttgacttccatttgttgcctaatggtaatatcttagtctttttttcaccttaatcaggtagtgttgcactgcatcatgaggagacaatttcttcaaagggatttctactagttgctgctgatgagccaggtccagcagtacgtggttcgcacataagaggaagcatggttagggcagcagaaggtggttatgaagaagttgatcttgttttgccaggcactggaaggtagattgacttgtacttaattatttcaaagttcaacttagcattgggtatatttgttgctgcacaatctgaacatgcatagaagaaagaatataaattgcgtagtatagctatcacactcttcaggaaagatttcttagtatatcagtgtgttctaaagtacaaagtacaacgaacttgttggtgacttgatccattatttgattttttgaacttttatatcaaccctttagctttaaaataaacattcacaatacaactcaacgttgggtgaaccatggcagctccaccagacaacacgataattttatgactattcaatgcaacatctacgtttgcaagttgatagttaagtgtgaattctcgaagcattcatagatgtagagcatataatagctcgtgcatttgaataggctgtgtcaaaagaattatcatttttgtgcatggtaaaacaaggtcaagtgtgtgttcatatatttggaaagaaatatcagtaatatacattgcctgtcttctttagtgcacatacggcggtggttttacacttttttgcacctgtgcccctgctatactaacttaaacttaccgttggtgcagttgcatatcataagtgcagaaaatcccaaccacatattcacacgttttacatgccgtcaatgtttttttctgaaactatggtctgcgtggtactttgttttcacaaagatgcattctgtttctgactcatttgttcgttattttcaggttccgtgttcagctaggggtgaatatgccagctcgagctcggaaagtgcaagaggacgtgaacgtagaagtagaaaacagggacaccattgaagagtatgatgttgtcctataccttggtatcatcgacatactacaagagtataatgtgtccaaaagagttgagcatgctgtcaaatcactaaaattcgaccctctttcgatatcagctgttgatccaaatttgtattcgagacgatttataagtttcttggagaaggttttccccgagcaagattgaacagtaaatagatattgcaagtttcttggag</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057540.1 RefSeq:Os03g0701800]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 3]]
 
[[Category:Chromosome 3]]
 

Latest revision as of 13:11, 3 November 2016

The rice Os03g0701800 was reported as OsPIPK1 in 2004 [1] by researchers from the China.

Annotated Information

Gene Symbol

  • Os03g0701800 <=> OsPIPK1


Function

  • OsPIPK1 is involved in rice heading through regulation of floral induction genes, signaling and metabolic pathways.
  • Encoding a 792-aa putative phosphatidylinositol 4-phosphate 5-kinase (PIPK)


Expression

  • OsPIPK1 was expressed almost constitutively in roots, shoots, stems, leaves and flowers, and upregulated following treatment with plant hormones or application of various stresses.


Labs working on this gene

  • National Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai;
  • Institutes for Biological Sciences (SiBS), Chinese Academy of Sciences;
  • Partner Group of Max-PlanckInstitute of Molecular Plant Physiology (MPI-MP) on ‘‘Plant Molecular Physiology and Signal Transduction’’, 300 Fenglin Road, 200032 Shanghai, China


References

  1. OsPIPK1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes


Structured Information