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| − | {{JaponicaGene|
| + | The rice Os02g0177600 was reported as Os4CL in 2011 <ref name="ref1" /> by researchers from the China. |
| − | GeneName = Os02g0177600|
| + | <br> |
| − | Description = Similar to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment)|
| + | ==Annotated Information== |
| − | Version = NM_001052604.1 GI:115444578 GeneID:4328485|
| + | [[File:29-f1.png |right |thumb |10000px |''''''Figure 1. Gene structure and phylogenetic analysis of the rice 4CL family. '''''']] |
| − | Length = 5428 bp|
| + | ===Gene Symbol=== |
| − | Definition = Oryza sativa Japonica Group Os02g0177600, complete gene.|
| + | *'''Os02g0177600 <=> Os4CL''' |
| − | Source = Oryza sativa Japonica Group
| + | <br> |
| | + | ===Function=== |
| | + | *rice 4CLs exhibit different in vitro catalytic properties from those in dicots and that 4CLmediated metabolism in vivo may play important roles in regulating a broad range of biological events over the course of rice growth and development. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ===Expression=== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *Suppression of Os4CL3 expression resulted in significant lignin reduction, shorter plant growth, and other morphological changes. The 4CL-suppressed transgenics also displayed decreased panicle fertility, which may be attributed to abnormal anther development as a result of disrupted lignin synthesis. |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | <br> |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ==Labs working on this gene== |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | *Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology; |
| − | AP = Chromosome 2:4280499..4285926|
| + | *Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China |
| − | CDS = 4280590..4281225,4281749..4282102,4282214..4282412,4284991..4285204,4285299..4285401<br>,4285481..4285639|
| + | <br> |
| − | GCID = <gbrowseImage1>
| + | ==References== |
| − | name=NC_008395:4280499..4285926 | + | <references> |
| − | source=RiceChromosome02
| + | <ref name="ref1"> |
| − | preset=GeneLocation
| + | Allina SM, Pri-Hadash A, Theilmann DA, Ellis BE, Douglas CJ (1998) 4-Coumarate:coenzyme A ligase in hybrid poplar: properties of native enzymes, cDNA cloning, and analysis of recombinant enzymes. Plant Physiol 116: 743–754 |
| − | </gbrowseImage1>| | + | </ref> |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008395:4280499..4285926
| + | </references> |
| − | source=RiceChromosome02
| + | <br> |
| − | preset=GeneLocation
| + | <br> |
| − | </gbrowseImage2>| | + | <br> |
| − | CDNA = <cdnaseq>atggggtcggtggcggcggaggaggtggtggtgttccggtcgaagctgccggacatcgagatcgacaacagcatgacgctgcaggagtactgcttcgcgaggatggcggaggtcggggcgcggccgtgcctgatcgacgggcagaccggggagtcgtacacgtacgcggaggtggagtccgcgtcgcggcgcgccgcggcggggctccggcggatgggggtgggcaagggcgacgtggtgatgagcctcctccgcaactgccccgagttcgccttctccttcctcggcgcggccaggctgggcgccgccaccacgacggcgaacccgttctacacgccgcacgaggtccaccgccaggcggaggccgcgggcgccagggtgatcgtcaccgaggcgtgcgccgtcgagaaggtgcgggagttcgccgcggagaggggcgtccccgtggtcaccgtggacggcgcgttcgacggctgcgtggagttccgcgaggtgctcgccgcggaggagctcgacgccgacgccgacgtccaccccgacgacgtcgtcgccctcccctactcctccggcaccaccggcctccccaagggcgtcatgctcacccaccgcagcctcatcaccagcgtcgcccagcaggtggatggagagaaccctaacctgtacttcagcaaggatgatgttatactatgcctgctgccactgttccacatctactcgctcaactccgtgctgctggctggcctgcgtgccgggtcgaccatcgtgatcatgcggaagtttgatcttggcgcgctcgtcgaccttgtgcgcaagcacaacatcaccatcgcccccttcgtgccccccatcgtggtggagatcgccaagagcccccgcgtcaccgcggaggacctcgcctccatccgcatggtcatgtccggtgccgcgcccatggggaaggaccttcaggatgcattcatggccaagatccccaatgccgtcctcggacagggttacggtatgactgaggctgggccagtgctggcaatgtgcctggcgtttgccaaggagcccttcaaggttaagtccgggtcgtgcggtacagtggtgcgcaacgcggagctgaagatcgtcgaccccgacaccggcacctccctcggccggaaccagtccggcgagatctgcatccgcggagaacagatcatgaaaggctatctgaatgatcctgaggcgaccaagaacaccatcgacgaggacgggtggctgcacaccggagacatcggcttcgtcgacgacgacgacgagatcttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggccgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgtctcgatgaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctcagaaatcaccgaggatgagatcaagaaattcgttgcaaaagaggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaaggacttgagagccaggctcgccgccggcatccccgacgccgtcgccgccgccgccgccgatgcgcccaaaagcagctaa</cdnaseq>|
| + | <br> |
| − | AA = <aaseq>MGSVAAEEVVVFRSKLPDIEIDNSMTLQEYCFARMAEVGARPCL IDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARLGA ATTTANPFYTPHEVHRQAEAAGARVIVTEACAVEKVREFAAERGVPVVTVDGAFDGCV EFREVLAAEELDADADVHPDDVVALPYSSGTTGLPKGVMLTHRSLITSVAQQVDGENP NLYFSKDDVILCLLPLFHIYSLNSVLLAGLRAGSTIVIMRKFDLGALVDLVRKHNITI APFVPPIVVEIAKSPRVTAEDLASIRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGM TEAGPVLAMCLAFAKEPFKVKSGSCGTVVRNAELKIVDPDTGTSLGRNQSGEICIRGE QIMKGYLNDPEATKNTIDEDGWLHTGDIGFVDDDDEIFIVDRLKEIIKYKGFQVPPAE LEALLITHPEIKDAAVVSMKDDLAGEVPVAFIVRTEGSEITEDEIKKFVAKEVVFYKR INKVFFTDSIPKNPSGKILRKDLRARLAAGIPDAVAAAAADAPKSS</aaseq>|
| + | <br> |
| − | DNA = <dnaseqindica>92..727#1251..1604#1716..1914#4493..4706#4801..4903#4983..5141#aggagacctcgccgccgatcgatcaatcgccgccgccgtctcctcgtgtaaccctagcttagtggattagtttaagtgtttgccggagattatggggtcggtggcggcggaggaggtggtggtgttccggtcgaagctgccggacatcgagatcgacaacagcatgacgctgcaggagtactgcttcgcgaggatggcggaggtcggggcgcggccgtgcctgatcgacgggcagaccggggagtcgtacacgtacgcggaggtggagtccgcgtcgcggcgcgccgcggcggggctccggcggatgggggtgggcaagggcgacgtggtgatgagcctcctccgcaactgccccgagttcgccttctccttcctcggcgcggccaggctgggcgccgccaccacgacggcgaacccgttctacacgccgcacgaggtccaccgccaggcggaggccgcgggcgccagggtgatcgtcaccgaggcgtgcgccgtcgagaaggtgcgggagttcgccgcggagaggggcgtccccgtggtcaccgtggacggcgcgttcgacggctgcgtggagttccgcgaggtgctcgccgcggaggagctcgacgccgacgccgacgtccaccccgacgacgtcgtcgccctcccctactcctccggcaccaccggcctccccaagggcgtcatgctcacccaccgcagcctcatcaccagcgtcgcccagcaggtgagccctccatgaatccctctcctccttcttctctgctctactctgcttccatttccgtcgtttccgagtccgggaagctgagctcgcagtagctgacatgtgggccccaccgccagctcggtggggcccacatgtcagactatctgagggatgttctgttcccattttggataactcggtgatcaagcgagcaggggccggctgggttggattattcggatttgtttcgatttggcgttacatatgcgctgtgcttgtgtccgtagatttgttcacttgtgtgcaactgtgagctactactactggtaatagtgttatgctgctcggtgtggggcccacctcccacaggcatcgtcacctaacaacggtgtctggttgtggcccctgcgtcaagattcgtgcatggtcatccatgagttttggcgccaacggccaagctatttcaaacatgagttaatatagtattatcgagtagtaactaaacgtgatcaaattttcattctttttttggttcatgaaggtggatggagagaaccctaacctgtacttcagcaaggatgatgttatactatgcctgctgccactgttccacatctactcgctcaactccgtgctgctggctggcctgcgtgccgggtcgaccatcgtgatcatgcggaagtttgatcttggcgcgctcgtcgaccttgtgcgcaagcacaacatcaccatcgcccccttcgtgccccccatcgtggtggagatcgccaagagcccccgcgtcaccgcggaggacctcgcctccatccgcatggtcatgtccggtgccgcgcccatggggaaggaccttcaggatgcattcatggccaagatccccaatgccgtcctcggacaggtaaattgatgccacattacaatcattgcgcggacgaaaacaaaatctcctctctctctctttttttttgagtcactgacaagttagtccgtcatatcccttcttctttagggttacggtatgactgaggctgggccagtgctggcaatgtgcctggcgtttgccaaggagcccttcaaggttaagtccgggtcgtgcggtacagtggtgcgcaacgcggagctgaagatcgtcgaccccgacaccggcacctccctcggccggaaccagtccggcgagatctgcatccgcggagaacagatcatgaaaggtacacacatcacccacccccacccaggccaaaccctccattgatctctagataggatgtcaataccctgacgctgacgtggcgcaaaacgacacaaggccgttggacactcgcctctcccactgttgggtgggcccggggtggcgacttctctcccgcacacttggctttcaggtcgtacatggcgtcttgctgcgagctgagtgaacaaacttgctgcagcttaatttggtgcataggttggaaaccaactcgtttggtcccctgcgattaggccaaaacacatgtttttacatgcgacgatgagtcgtcgtcgtgattttggattggtctctaccaagccacaaacgtggtagtctagctgccagtaccagtagggtaggttccagtttccaccgactgaatctgaattctttcggagaaattctgtgcaaaaccagctgaaaaatcgatatcgtctccgatttctttgaacagaggaaggttctgattctttttttttttttggcttttgaaacgtggttagtggctgatgttgaggggtcggaatttcccgtactggaaacagttgaggtgttgctgattaggtggttcgttgggagatcctttttattaaaaaagaagtggacagattagtggtttggtccaagctccatggcgatgattgcctgaacagctgagagaggagagaggaatttccgtccactccacgtctttttttctctgatttatttgtggtagcagtgacctcgcgtggttgttggcacgcaccagctcgcatcctagcttgcagccacacaacgacgcacgttgctactgcaaaatcatgctcatcatcatcatcgcagtggcacgatcctggaatccaagttgcgatgcttcttcaagcagatgaaagaatgggggaaaagagagagagagagagagagattagagcaagtgtgtctgccacatggatgatctgaagatcagaaaattcaggaagtgaggttccactaatgtttgttttcgcaatgcgtttttggacaaggcattattgcaattaggaacctggcaggtcaaaggcttttgggtgaggcgaacatgggcattggcaatttaggcttatgcgtctagtatgcgtgtgttcggtagtgggcttatagttggacatgacatcaagcaaaggagaagtggcagcttatcctgaccgtatcttatctcagttctcaccatgtggatgtcatgtccattgttcacaacttattttttctgaagatttcttcttttgaggacttgttctgaacctgtttctctgaagaactgttctgaacttgtttctctgaagaactgttctgaacttgtttctctgaagaactgttctgaacttctaattgattggatatttagttggcatagtcaaacctgtactacttacatggtacacaataaattatgtctactggttttaaaatggttgatgttgtcatgcgggccaggagacagctggtaccggttaattagaacgagatgttttctttttctaagcctttcctttcaagttcctttcagaagtttgttaggttctagtttacctatcaacggatcattggttggtatctgcttggcgtgcaaagtggagatcacatcaatttcagtcgccagccatgcttcagttctcctgcatctttctgttcatcaaccactactataatgaaacccaaaccaaaccaaacacccaaagcttagctagtcttctagtattaatcaataccacaccatcatgtgaagcaagtgtcaccatcacataatgcaggattagcatggacatggcatctcaagtaccaagttgaataaggaggtatccaattagcactgctgcatctcagaaagcattgcacaattcatagttagaacaggccaaatgagtggtccatcaacctaattgctgtcactggcttggaaatgtttggtggcccatcatgtgaaattgtgaacaagaaaagccacagttgggtgactgctccagttgctcaaagtccagcctgaaaatcaatcaaagaaagatggcaatggcgtcacaagtcaatcctaacctttgtcccattaaatttgaagagtctatctgaccaaaccaaactctagttggtacagtaggtacaaatcccaagactctttggtttggttgatggatgcagccgccagcatcctggatatctttgtgaagtttttacctttttttttactttgaataaaacttagaattctaccagtgctgcaaaaacaacagaaaattcagaaaatgattgccacttcaatgctggcaccaaacaagaatcacctgaaaaataagttcagtaccctgccaattgccatgtgcatgtacacatctgaaaaccaatgactctccttgacgttaacagttacagcttagctctgccatgtgcgtgcatgcactgatgcaaagctggatccgatgtttcctttggattatttgatctgcagtacagaattttgtcaccactgaaactgtcttctccttcagaaacagcaggaaatgattcttggccgtactgacgagctgtggggaattttgcaggctatctgaatgatcctgaggcgaccaagaacaccatcgacgaggacgggtggctgcacaccggagacatcggcttcgtcgacgacgacgacgagatcttcatcgtggacaggctcaaggagatcatcaagtacaaggggttccaggtgccaccggccgagctggaggcgctgctcatcactcacccggagatcaaggacgccgccgtcgtctcgtgagtccatctctgatgaaattcgccattgattaatcgcgagagaatgtagtgaactgtcactgattcagttgctggtgaaacttgttttcaggatgaaggatgatcttgccggtgaagtgccagtcgccttcattgtccggacagaaggctcagaaatcaccgaggatgagatcaagaaattcgttgcaaaagaggtactaatcacatgcaaatgacagcaacaaggattctgatttaaatcttgctaaaatttttctgacacgtttgcaacaggtggtgttctacaagaggatcaacaaggtgttcttcaccgattccatccccaagaacccttccggcaagatcctcaggaaggacttgagagccaggctcgccgccggcatccccgacgccgtcgccgccgccgccgccgatgcgcccaaaagcagctaaggccaacgccgacgttttctctattttcagtcacacaaccggtgaaaaaaaaatgcagagatatgatgttgctgtccatgaaaatggaggcagaaatggagcagaggaagtttatagtttggtttgttggttggttgatgctgctgcagcagcttgtgcaatgttcataaaatggcattaataatattattattattattatacatagatgatgtattgtttttgaccataagaacaaggctgattacaaaataatacagtgtattaattacgccctgtttctctct</dnaseqindica>|
| + | <br> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052604.1 RefSeq:Os02g0177600]|
| + | <br> |
| − | }}
| + | <br> |
| − | [[Category:Genes]] | + | <br> |
| − | [[Category:Japonica mRNA]]
| + | <br> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | <br> |
| − | [[Category:Japonica Genes]] | + | <br> |
| − | [[Category:Japonica Chromosome 2]]
| + | <br> |
| − | [[Category:Chromosome 2]]
| + | <br> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
