Difference between revisions of "Os02g0190600"

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(Created page with "{{JaponicaGene| GeneName = Os02g0190600| Description = Lycopene cyclase, beta and epsilon family protein| Version = NM_001052686.2 GI:297598739 GeneID:4328572| Length = 11...")
 
 
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{{JaponicaGene|
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The rice '''Os02g0190600''' was reported as ''' b-OsLCY''' in 2008 <ref name="ref1" /> by researchers from the China.
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GeneName = Os02g0190600|
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<br>
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Description = Lycopene cyclase, beta and epsilon family protein|
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==Annotated Information==
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Version = NM_001052686.2 GI:297598739 GeneID:4328572|
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===Gene Symbol===
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Length = 1106 bp|
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*'''Os02g0190600 <=> b-OsLCY'''
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Definition = Oryza sativa Japonica Group Os02g0190600, complete gene.|
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<br>
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Source = Oryza sativa Japonica Group
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===Function===
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*Lycopene b-cyclase ('''b-OsLCY'''), which are essential for the biosynthesis of carotenoid precursors of ABA.
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*The impairment of carotenoid biosynthesis causes photo-oxidation and ABA-deficiency phenotypes, of which the latter is a major factor controlling the PHS trait in rice.
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<br>
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===Mutant===
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*'''OsLCY''' RNAi transgenic rice indicated that photo-oxidative damage occurred in PS II, consistent with the accumulation of ROS in these plants.
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<br>
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==Labs working on this gene==
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*State Key Laboratory of Plant Genomics and National Centre for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences (CAS), Beijing 100101, China,
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*Graduate University of the CAS, Beijing 100039, China,
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*State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou 310006, China,
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*Centre for Biological Electron Microscopy, Institute of Biophysics, CAS, Beijing 100101, China,
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*State Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Institute of Botany, CAS, Beijing 100093, China,
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*National Centre for Gene Research, CAS, Shanghai 200233, China, and
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*Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, CAS, Beijing 100101,China
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<br>
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==References==
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<references>
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<ref name="ref1">
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Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice
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</ref>
  
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  ORGANISM  Oryza sativa Japonica Group
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</references>
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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<br>
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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==Structured Information==
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
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|
 
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Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
 
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AP = Chromosome 2:5028608..5029713|
 
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CDS = 5028910..5029713|
 
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GCID = <gbrowseImage1>
 
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name=NC_008395:5028608..5029713
 
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source=RiceChromosome02
 
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preset=GeneLocation
 
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</gbrowseImage1>|
 
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GSID = <gbrowseImage2>
 
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name=NC_008395:5028608..5029713
 
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source=RiceChromosome02
 
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preset=GeneLocation
 
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</gbrowseImage2>|
 
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CDNA = <cdnaseq>caggtcgcctatggcatcctcgccgaggtggacggacacccgttcgacatcgacaagatgctgttcatggactggcgcgacgcgcacctccccgaggggtccgagatcagggagcgcaaccgccgcatcccgacgttcctctacgccatgcccttctccccgacgaggatcttcctcgaggagacctccctcgtggcgcgcccgggcctcgccatggacgacatccaggagcgcatggcggcgaggctgcgccacctcgggatacgcgtccgcgccgtggaggaggacgagcggtgcgtcatccccatgggcggcccgctcccggtgctcccgcagcgggtcgtcggcatcggcggcaccgccgggatggtgcacccgtccacgggctacatggtggcgcgcaccctcgccactgcgcccatcgtggcggacgccatcgtgcgcttcctcgacaccggcagcggcgacagcgcgttcgccggcgacgcgctgtcggcggaggtgtggagggagctgtggccggcgcagaggaggaggcagagggagttcttctgcttcggcatggacatcctcctcaagctcgacctcgacggcacgcggcgattcttcgacgccttcttcgacctggagccgcgctactggcacggcttcctgtcgtcgaggctcttcttgccggagctcgccatgttcggcctctccctcttcgccaaggcctccaacacgtcgcgcctcgagatcatggccaagggcaccgcccctctcgccaagatgatcggcaacctcatccaggacagagataggtga</cdnaseq>|
 
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AA = <aaseq>QVAYGILAEVDGHPFDIDKMLFMDWRDAHLPEGSEIRERNRRIP                    TFLYAMPFSPTRIFLEETSLVARPGLAMDDIQERMAARLRHLGIRVRAVEEDERCVIP                    MGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLATAPIVADAIVRFLDTGSGDSAFA                    GDALSAEVWRELWPAQRRRQREFFCFGMDILLKLDLDGTRRFFDAFFDLEPRYWHGFL                    SSRLFLPELAMFGLSLFAKASNTSRLEIMAKGTAPLAKMIGNLIQDRDR</aaseq>|
 
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DNA = <dnaseqindica>1..804#caggtcgcctatggcatcctcgccgaggtggacggacacccgttcgacatcgacaagatgctgttcatggactggcgcgacgcgcacctccccgaggggtccgagatcagggagcgcaaccgccgcatcccgacgttcctctacgccatgcccttctccccgacgaggatcttcctcgaggagacctccctcgtggcgcgcccgggcctcgccatggacgacatccaggagcgcatggcggcgaggctgcgccacctcgggatacgcgtccgcgccgtggaggaggacgagcggtgcgtcatccccatgggcggcccgctcccggtgctcccgcagcgggtcgtcggcatcggcggcaccgccgggatggtgcacccgtccacgggctacatggtggcgcgcaccctcgccactgcgcccatcgtggcggacgccatcgtgcgcttcctcgacaccggcagcggcgacagcgcgttcgccggcgacgcgctgtcggcggaggtgtggagggagctgtggccggcgcagaggaggaggcagagggagttcttctgcttcggcatggacatcctcctcaagctcgacctcgacggcacgcggcgattcttcgacgccttcttcgacctggagccgcgctactggcacggcttcctgtcgtcgaggctcttcttgccggagctcgccatgttcggcctctccctcttcgccaaggcctccaacacgtcgcgcctcgagatcatggccaagggcaccgcccctctcgccaagatgatcggcaacctcatccaggacagagataggtgaggtgaggatctgcatcatctctcatctcaagatctgcatttggatcactgaattttgctgctgctgctgctgctgctgctgctgaatgtatccaagatttgcaaagatgagaacaccattagcagcagcaagctaggagacaatccatccaggagatgaagtgtgtgagttgagtaacaattgctgctgcaaaacacactcttttttaagcctggtgattacaaaatttgagctgtatagttcatatttgaggtatgatgatgtgcctctcaatgtactgtataaatgtcatgatgtcaaac</dnaseqindica>|
 
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052686.2 RefSeq:Os02g0190600]|
 
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}}
 
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[[Category:Genes]]
 
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[[Category:Japonica mRNA]]
 
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[[Category:Oryza Sativa Japonica Group]]
 
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[[Category:Japonica Genes]]
 
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[[Category:Japonica Chromosome 2]]
 
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[[Category:Chromosome 2]]
 

Latest revision as of 02:33, 13 December 2016

The rice Os02g0190600 was reported as b-OsLCY in 2008 [1] by researchers from the China.

Annotated Information

Gene Symbol

  • Os02g0190600 <=> b-OsLCY


Function

  • Lycopene b-cyclase (b-OsLCY), which are essential for the biosynthesis of carotenoid precursors of ABA.
  • The impairment of carotenoid biosynthesis causes photo-oxidation and ABA-deficiency phenotypes, of which the latter is a major factor controlling the PHS trait in rice.


Mutant

  • OsLCY RNAi transgenic rice indicated that photo-oxidative damage occurred in PS II, consistent with the accumulation of ROS in these plants.


Labs working on this gene

  • State Key Laboratory of Plant Genomics and National Centre for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences (CAS), Beijing 100101, China,
  • Graduate University of the CAS, Beijing 100039, China,
  • State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou 310006, China,
  • Centre for Biological Electron Microscopy, Institute of Biophysics, CAS, Beijing 100101, China,
  • State Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Institute of Botany, CAS, Beijing 100093, China,
  • National Centre for Gene Research, CAS, Shanghai 200233, China, and
  • Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, CAS, Beijing 100101,China


References

  1. ↑ Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice


Structured Information