Difference between revisions of "Os02g0198300"

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(Created page with "{{JaponicaGene| GeneName = Os02g0198300| Description = Arf GTPase activating protein family protein| Version = NM_001052741.2 GI:297598777 GeneID:4328629| Length = 3339 bp...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os02g0198300''''' was reported as '''''OsAGAP,''''' in 206 <ref name="ref1" /> by researchers from China.  
GeneName = Os02g0198300|
 
Description = Arf GTPase activating protein family protein|
 
Version = NM_001052741.2 GI:297598777 GeneID:4328629|
 
Length = 3339 bp|
 
Definition = Oryza sativa Japonica Group Os02g0198300, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Function===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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* Development and organogenesis in both dicot and monocot plants are highly dependent on polar auxin transport (PAT), which requires the proper asymmetric localization of both auxin influx and efflux carriers.
            clade; Ehrhartoideae; Oryzeae; Oryza.
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* The rice '''''OsAGAP''''' is an ARF-GTPase-activating protein (ARF-GAP) in rice, impaired PAT and interfered with both primary and lateral root development.
|
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* '''''OsAGAP''''' has a specific role in regulating vesicle trafficking pathways such as the auxin influx pathway, which in turn controls auxin-dependent root growth in plants.
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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AP = Chromosome 2:5505087..5508425|
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===Phenotypic analysis===
CDS = 5505630..5505654,5505965..5506049,5506444..5506519,5506694..5506857,5507059..5507176<br>,5507283..5507399,5507543..5507638,5507905..5508186|
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* The lateral root phenotype could be rescued by the membrane-permeable auxin 1-naphthyl acetic acid, but not by indole 3-acetic acid (IAA) or by 2,4-dichloro-phenoxyacetic acid, which require influx facilitators to enter the cells.
GCID = <gbrowseImage1>
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* OsAGAP-over-expressing plants had alterations in vesicle trafficking and localization of the presumptive A. thaliana auxin-influx carrier AUX1, but not in the localization of the auxin efflux facilitators.
name=NC_008395:5505087..5508425
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source=RiceChromosome02
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preset=GeneLocation
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You can also add sub-section(s) at will.
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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==Labs working on this gene==
name=NC_008395:5505087..5508425
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* Key Laboratory of Photosynthesis and Molecular Environmental Physiology, Institute of Botany, Chinese Academy of Sciences,
source=RiceChromosome02
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Beijing 100093, China,
preset=GeneLocation
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* Graduate School of the Chinese Academy of Sciences, Beijing 100093, China,
</gbrowseImage2>|
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* Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of
CDNA = <cdnaseq>atgagtggaagacgtgatgattcagctaagatggcaaaactgaaggagctattgcacagaagtgaaaaccgtatctgtgctgactgcagcgcgcctgaccccaaatgggcatcagctaatataggagtattcatatgcctcaagtgttccggtgttcacagaagtcttggcacacacatttcaaaggttctgtcagtcacactagatcagtggagtgacaatgaaattgataacgtgatcgaagtcggtggaaattctcacgccaatgctatatatgaaaccttcctgccgcagaaccacagcaagccacatccagattctacccaggaagagcgagaaaaattcatcaggtcaaaatatgagttacaagagtttcttgagccaagcctacggattgtttctcatcagtctagcgactccgggaaacatgcaggcagtgcctcccattctgtcagttccaagagcgaagtaggcatgattgagttcatcggaatattgaatgtcaaggtgaaaggaggcaccaacctagccatcagagacatgtcaagcagtgatccttatgtagtcctgacccttgggcaacagaaagcgcaaacctcggtgatcaaagccaacctgaaccctgtctggaacgaagaactcaagctctctgttcctcagcaatacggccctctcaaactgcaagtgttcgaccacgacatgctgtccaaggacgacctgatgggggaggccgagatcgacctgcagccgatgatcaacgcggcggcggcgttcggcgacccggggctgctcggcgaccggcagatcggccggtggctcaagtccggcgacaacgcgctcgtcagggacagcgccgtcgtggtcgccggcggcgaggtgaggcaggagctggccctcaagctgcagttcaccgagtccggcgaggtggagctggagatgcagtggtttccactcaacatgtag</cdnaseq>|
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Sciences, Beijing 100086, China, and
AA = <aaseq>MSGRRDDSAKMAKLKELLHRSENRICADCSAPDPKWASANIGVF                    ICLKCSGVHRSLGTHISKVLSVTLDQWSDNEIDNVIEVGGNSHANAIYETFLPQNHSK                    PHPDSTQEEREKFIRSKYELQEFLEPSLRIVSHQSSDSGKHAGSASHSVSSKSEVGMI                    EFIGILNVKVKGGTNLAIRDMSSSDPYVVLTLGQQKAQTSVIKANLNPVWNEELKLSV                    PQQYGPLKLQVFDHDMLSKDDLMGEAEIDLQPMINAAAAFGDPGLLGDRQIGRWLKSG                    DNALVRDSAVVVAGGEVRQELALKLQFTESGEVELEMQWFPLNM</aaseq>|
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* National Plant Gene Research Center, Beijing 100093, China
DNA = <dnaseqindica>544..568#879..963#1358..1433#1608..1771#1973..2090#2197..2313#2457..2552#2819..3100#accgaccaatccccatggagctgctgctgtaatccacacgacagagtcagagatctggggactaagtcccaagaacatccctccctcccctcccagccaggagaaatccaaggtaatccagaatctcccttgagcattcctgcaaatcctgggttttttttttcaattcttggtttcttgatgtctctcaagtataggcgatatcctgaattcctttcatcatggttaggctgttcttagcgctttgctgaattgcatttcttcgaattcatttcatcgcgctgcaccgattgctgttcttctatggatttgacactgaaaaagggggacagcgtgattcactcgagttgagatttctcaggtgtcaaaaggcaaaacgacattgatgcatgagtgttcttggatgcttctttacatatgtagcaggaaactataggatgaggaaaaggaactccttgaagttcagtatttctgtttggttgatgcatatttgcaggactgaaaacattggaaagtgtaactaagcagtaagaagatctgaatatgagtggaagacgtgatgattcaggtacttttaccatcaggcactgagcattcactttctttatcactgcattgaattgcataatatgctcctgctgccctcaaaagagcaaattggagaatcagtcatattgcacagtgaagtgaataatgtgtggtgatcatgcacaaattggtgaccaaaaacaaaattctgcaacttcttggagtacttcagatttggtcattttcaatgggtgtgcatttactagtttgctctttagtgctgacagataagattttgccggtggagaaggtcttgcatgatgaattcatatttcatttttctcatgcagctaagatggcaaaactgaaggagctattgcacagaagtgaaaaccgtatctgtgctgactgcagcgcgcctgaccccaaatgggcgtaagtattttcaacctgattcaaactatctgcagagcatctgattcccagtggctgtaagactttgtagaacctgattgttcaatttgaatcagttggtggtttaagtgatcactagtaattagtttgttttcatatccttgctgtgtttttgtttgtatcctcttctcttctatttattttctctggcaatggtatttgcacaagaaaaaaaccaggcagcatgtattgaggaaaaatgaatgatgcacacacagccttaaatctgaagaatcccttccattttgccccatacctgtcattatgagcataatcaggctattgtacactgattttagttaggggcttctcttgactgatagttccttgcaattaattgtttttttccttacagatcagctaatataggagtattcatatgcctcaagtgttccggtgttcacagaagtcttggcacacacatttcaaaggtttcttcaattgcaatatagatagtgctataaatcttttttcatctttcttatccaattgaattcagcaagtttttctgtatttacagcataggcaaagtttgcactgacaattatggcatattatacatcatgttttgagcataatcaccattcagtatttgttttgagcaggttctgtcagtcacactagatcagtggagtgacaatgaaattgataacgtgatcgaagtcggtggaaattctcacgccaatgctatatatgaaaccttcctgccgcagaaccacagcaagccacatccagattctacccaggaagagcgagaaaaattcatcaggtattttattcctctgttagttcgcagcactttcaagtgcagggtatgccattctctcatctgaattcccagatacaggtcaatactttggagcttcccttttgttctgcaaattgaactgaagaaatagcttaaaaaaatgttctcctatggtgtttcagttatatcaaatgacacatacagttaattacaattcttcaggtcaaaatatgagttacaagagtttcttgagccaagcctacggattgtttctcatcagtctagcgactccgggaaacatgcaggcagtgcctcccattctgtcagttccaagagcgaagtaggcagcactgtcctaaaactgcaaattgcattttgttctaccttacttagcatgttctgcgactcttagattcaaatttagtaatccccgatttgatttgcaggtaggcatgattgagttcatcggaatattgaatgtcaaggtgaaaggaggcaccaacctagccatcagagacatgtcaagcagtgatccttatgtagtcctgacccttgggcaacaggtagtattatgaaatcctaattttctgatggtttctgggcaactaattcaagatcgaattcatcgttttgtaccacattgtctctcattcagaacatgcagaaattcttgttctaaatttcaccatatcttcgctgtgtgcagaaagcgcaaacctcggtgatcaaagccaacctgaaccctgtctggaacgaagaactcaagctctctgttcctcagcaatacggccctctcaaactggtaaatcccctcacagaatcacaaccaaaccttcgaaaatcttctaatctgtttcttccatctgatagtcaaaatagctaattgttcaccactgaaattttccggtgtgttcttccatctgacaattaattttctggtttgttcatacatctgataattagtttttctgattagtgttcatccatctgataattgtgacaattagtttctctgatccgagtgttcatccatctgataattgtgatctttgcttttcttggatgcagcaagtgttcgaccacgacatgctgtccaaggacgacctgatgggggaggccgagatcgacctgcagccgatgatcaacgcggcggcggcgttcggcgacccggggctgctcggcgaccggcagatcggccggtggctcaagtccggcgacaacgcgctcgtcagggacagcgccgtcgtggtcgccggcggcgaggtgaggcaggagctggccctcaagctgcagttcaccgagtccggcgaggtggagctggagatgcagtggtttccactcaacatgtagaacaaatcacgctgtcacttcggatttcaagctggagaattttagaaaaagaaaagatgggttttgataatgaagttcattgcatgaactgtttcagcaagtttttgcgttgtttacatggcaaattttgctgcgttcagaaattttaaatttttggtttggcacgagccattgccctgttaacttggttcatttgtgattccaataaaaaggattcttttgtgctctgggttaaattc</dnaseqindica>|
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==References==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052741.2 RefSeq:Os02g0198300]|
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<references>
}}
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* <ref name="ref1">
[[Category:Genes]]
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Zhuang X, Jiang J, Li J, Ma Q, Xu Y, Xue Y, Xu Z, Chong K. Over-expression of
[[Category:Japonica mRNA]]
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OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root
[[Category:Oryza Sativa Japonica Group]]
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development. Plant J. 2006 Nov;48(4):581-91. PubMed PMID: 17059407.
[[Category:Japonica Genes]]
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[[Category:Japonica Chromosome 2]]
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</ref>
[[Category:Chromosome 2]]
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</references>
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Latest revision as of 08:30, 6 March 2017

The rice Os02g0198300 was reported as OsAGAP, in 206 [1] by researchers from China.

Annotated Information

Function

  • Development and organogenesis in both dicot and monocot plants are highly dependent on polar auxin transport (PAT), which requires the proper asymmetric localization of both auxin influx and efflux carriers.
  • The rice OsAGAP is an ARF-GTPase-activating protein (ARF-GAP) in rice, impaired PAT and interfered with both primary and lateral root development.
  • OsAGAP has a specific role in regulating vesicle trafficking pathways such as the auxin influx pathway, which in turn controls auxin-dependent root growth in plants.

Phenotypic analysis

  • The lateral root phenotype could be rescued by the membrane-permeable auxin 1-naphthyl acetic acid, but not by indole 3-acetic acid (IAA) or by 2,4-dichloro-phenoxyacetic acid, which require influx facilitators to enter the cells.
  • OsAGAP-over-expressing plants had alterations in vesicle trafficking and localization of the presumptive A. thaliana auxin-influx carrier AUX1, but not in the localization of the auxin efflux facilitators.


You can also add sub-section(s) at will.

Labs working on this gene

  • Key Laboratory of Photosynthesis and Molecular Environmental Physiology, Institute of Botany, Chinese Academy of Sciences,

Beijing 100093, China,

  • Graduate School of the Chinese Academy of Sciences, Beijing 100093, China,
  • Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of

Sciences, Beijing 100086, China, and

  • National Plant Gene Research Center, Beijing 100093, China

References

  1. Zhuang X, Jiang J, Li J, Ma Q, Xu Y, Xue Y, Xu Z, Chong K. Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development. Plant J. 2006 Nov;48(4):581-91. PubMed PMID: 17059407.

Structured Information