Difference between revisions of "Os02g0202400"

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(Created page with "{{JaponicaGene| GeneName = Os02g0202400| Description = Similar to Plastidial ADP-glucose transporter| Version = NM_001052765.1 GI:115444900 GeneID:4328656| Length = 2185 b...")
 
 
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{{JaponicaGene|
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The rice '''''Os02g0202400''''' was reported as '''''OsBT1''''' in 2016 <ref name="ref1" /> by researchers from India and Japan.  
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GeneName = Os02g0202400|
 
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Description = Similar to Plastidial ADP-glucose transporter|
 
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Version = NM_001052765.1 GI:115444900 GeneID:4328656|
 
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Length = 2185 bp|
 
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Definition = Oryza sativa Japonica Group Os02g0202400, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os02g0202400''''' '''''<=>''''' '''''OsBT1''''' '''''BT1'''''
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
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|
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*Major ADPglc transporter by studying the shrunken3 locus of the EM1093 rice line, which harbors a mutation in the '''''BRITTLE1(BT1)''''' adenylate transporter(OsBt1) gene.
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Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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AP = Chromosome 2:5736608..5738792|
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===Phenotypic analysis===
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CDS = 5736778..5737372,5737449..5737612,5737986..5738504|
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*ADPglc transport assays indicated that transgenic lines expressing ZmBT1 alone or combined with GlgC exhibited higher rates of transport (approximately 2-fold), with the GlgC (CS8) and GlgC/ZmBT1 (CS8/AT5) lines showing elevated ADPglc levels in amyloplasts.
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GCID = <gbrowseImage1>
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name=NC_008395:5736608..5738792
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source=RiceChromosome02
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You can also add sub-section(s) at will.
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preset=GeneLocation
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</gbrowseImage1>|
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==Labs working on this gene==
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GSID = <gbrowseImage2>
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*Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164 (B.C., A.T., S.-K.H.,T.W.O.); Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan (S.Sh., H.M., R.S., H.S.);
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name=NC_008395:5736608..5738792
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*Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat–785013, Assam, India (S.Si.);
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source=RiceChromosome02
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*Department of Biological Production, Akita Prefectural University, Akita City, Akita 010–01195, Japan(N.C., Y.H., N.F.)
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preset=GeneLocation
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</gbrowseImage2>|
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CDNA = <cdnaseq>atggcggcgatgatggcggtgacgacgatggtgacgaggaacaacgccgtcggcggcggcgcggtggcggtggtggacaggaaggggtggttcgtcccggaggtgtcgttcccgtggagctcggtggaaggggagtgcatcaacagcagcagcaagaggttggagttccctcgccggacggctgcgccgccgctgttcgccagcgtcgggctcagcttgccgtctgcggcgaagggccgggacaactgcgacgtcgcgcggcagctcgccgccgcggaggccgaggaggcggcggggaagaagaggcagggcaggaagatgaagggcggcggcgggctgctgtcgctgaggaaggtgagggtgaagatcgggaacccgcaccttcgccggctggtgagcggcgccatcgccggcgccgtgtcgcgcaccttcgtggcgccgctggagaccatccgcacccacctcatggtcggcagctgcggcgccggctccatggccgaggtcttccgctggatcatgcgcaccgagggctggaccggcctcttccgcggcaacgccgtcaacgtcctccgcgtcgcccccagcaaggccatcgagcatttcacctacgacacggccaagaagtacctcaccccggaggacggcgagcctgccaagatccccatccccgtccccctcgtcgccggcgccctcgccggtgtcgcctccaccctctgcacctaccccatggagctcgtcaagacccgcctcaccatcgagaaggacgtgtacgacaacgtgctgcacgcgttcgtgaagatcgtgcgggagggcgggccgggggagctgtaccgcggcctggcgccgagcctgatcggcgtggtgccctacgcggccaccaacttctacgcctacgagacgctgcgccgcctgtaccgccgcgccacggggcgcgccgacgtcggcccggccgcgacgctgctcatcgggtcggcggcgggcgccatcgccagcacggccaccttcccgctcgaggtcgcccgcaagcagatgcaggtcggcgccgtcggcggccggcaggtgtaccgccacgtgctccacgccatgtactgcatcctccgcggcgagggcgccgcgggcctctaccgcggcctcggccccagctgcatcaagctcatgcccgccgccggcatctccttcatgtgctacgaggcgctcaagaaggtactcgtcgaggaggaggcggcgccggagctggaggcggagtgcgcggaggagatcaaggagaaggttgcgtga</cdnaseq>|
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==References==
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AA = <aaseq>MAAMMAVTTMVTRNNAVGGGAVAVVDRKGWFVPEVSFPWSSVEG                    ECINSSSKRLEFPRRTAAPPLFASVGLSLPSAAKGRDNCDVARQLAAAEAEEAAGKKR                    QGRKMKGGGGLLSLRKVRVKIGNPHLRRLVSGAIAGAVSRTFVAPLETIRTHLMVGSC                    GAGSMAEVFRWIMRTEGWTGLFRGNAVNVLRVAPSKAIEHFTYDTAKKYLTPEDGEPA                    KIPIPVPLVAGALAGVASTLCTYPMELVKTRLTIEKDVYDNVLHAFVKIVREGGPGEL                    YRGLAPSLIGVVPYAATNFYAYETLRRLYRRATGRADVGPAATLLIGSAAGAIASTAT                    FPLEVARKQMQVGAVGGRQVYRHVLHAMYCILRGEGAAGLYRGLGPSCIKLMPAAGIS                    FMCYEALKKVLVEEEAAPELEAECAEEIKEKVA</aaseq>|
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<references>
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DNA = <dnaseqindica>171..765#842..1005#1379..1897#acaccagccaggaatcagaagccagaagcagcaacgctcgctctgattctttctttcctcctcgagctaggtgcgtagttgtcatatttgatcgatcggttttagttcttcttgtttaattttgattgcgcttgtagcagcaggaagtagttttaattttggtgtgatcgatggcggcgatgatggcggtgacgacgatggtgacgaggaacaacgccgtcggcggcggcgcggtggcggtggtggacaggaaggggtggttcgtcccggaggtgtcgttcccgtggagctcggtggaaggggagtgcatcaacagcagcagcaagaggttggagttccctcgccggacggctgcgccgccgctgttcgccagcgtcgggctcagcttgccgtctgcggcgaagggccgggacaactgcgacgtcgcgcggcagctcgccgccgcggaggccgaggaggcggcggggaagaagaggcagggcaggaagatgaagggcggcggcgggctgctgtcgctgaggaaggtgagggtgaagatcgggaacccgcaccttcgccggctggtgagcggcgccatcgccggcgccgtgtcgcgcaccttcgtggcgccgctggagaccatccgcacccacctcatggtcggcagctgcggcgccggctccatggccgaggtcttccgctggatcatgcgcaccgagggctggaccggcctcttccgcggcaacgccgtcaacgtcctccgcgtcgcccccagcaaggccatcgaggcaaccaactcaacctcacaccctccactttgtttttctttgaatttctcgtgatcgaatccatggcgtcctgcagcatttcacctacgacacggccaagaagtacctcaccccggaggacggcgagcctgccaagatccccatccccgtccccctcgtcgccggcgccctcgccggtgtcgcctccaccctctgcacctaccccatggagctcgtcaagacccgcctcaccatcgaggtaaacacaaacacacacaaacccccatcaaaaccttcaaaatcgatcaaactaatcacgaaagtggatttttttccccctccagatgacatcccctagttttgtgtatgcgattcaatacatgatatatcttttgcaaatatgcaagttaaaattcaacttatacaattcgaaacaaaaataacaaatttgacccataaattacgcgttctactcgtacaagttaaatttaaatttgcatgtttgtgaagtgacatatctctattctactaaaattttttaatgatcttttaagtgacatgtaaaaatgaggagatatcccaaattgagttttccaactaatcaccaccgccattgttgcgttttcttgcagaaggacgtgtacgacaacgtgctgcacgcgttcgtgaagatcgtgcgggagggcgggccgggggagctgtaccgcggcctggcgccgagcctgatcggcgtggtgccctacgcggccaccaacttctacgcctacgagacgctgcgccgcctgtaccgccgcgccacggggcgcgccgacgtcggcccggccgcgacgctgctcatcgggtcggcggcgggcgccatcgccagcacggccaccttcccgctcgaggtcgcccgcaagcagatgcaggtcggcgccgtcggcggccggcaggtgtaccgccacgtgctccacgccatgtactgcatcctccgcggcgagggcgccgcgggcctctaccgcggcctcggccccagctgcatcaagctcatgcccgccgccggcatctccttcatgtgctacgaggcgctcaagaaggtactcgtcgaggaggaggcggcgccggagctggaggcggagtgcgcggaggagatcaaggagaaggttgcgtgaagtggtttgggctcgccggcgccggagaagatggtggctgattgtgcatgggtgtgatgatggaagcatgcaagaaaagaagaaaaaaaagaagcaaaaaatggagagaagtttgtggttgctgtggtttgaagttggatgaatcatcgtaggattcgatttcctctgttcaggaggcatatggtgtgttttcaatgaagtgatgcatttcaagtttgttttcaatatatctatgtattgcatttcaagtttgttttcaataaaatctatgtatttccagttcaattt</dnaseqindica>|
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* <ref name="ref1">
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052765.1 RefSeq:Os02g0202400]|
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Cakir B, Shiraishi S, Tuncel A, Matsusaka H, Satoh R, Singh S, Crofts N, Hosaka Y, Fujita N, Hwang SK, Satoh H, Okita TW. Analysis of the Rice ADP-Glucose Transporter (OsBT1) Indicates the Presence of Regulatory Processes in the Amyloplast Stroma That Control ADP-Glucose Flux into Starch. Plant Physiol. 2016 Mar;170(3):1271-83. doi: 10.1104/pp.15.01911. Epub 2016 Jan 11. PubMed PMID:26754668; PubMed Central PMCID: PMC4775147.
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}}
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</ref>
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[[Category:Genes]]
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</references>
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[[Category:Japonica mRNA]]
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[[Category:Oryza Sativa Japonica Group]]
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==Structured Information==
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[[Category:Japonica Genes]]
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
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[[Category:Japonica Chromosome 2]]
 
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[[Category:Chromosome 2]]
 

Latest revision as of 08:50, 27 May 2017

The rice Os02g0202400 was reported as OsBT1 in 2016 [1] by researchers from India and Japan.

Annotated Information

Gene Symbol

  • Os02g0202400 <=> OsBT1 BT1

Function

  • Major ADPglc transporter by studying the shrunken3 locus of the EM1093 rice line, which harbors a mutation in the BRITTLE1(BT1) adenylate transporter(OsBt1) gene.

Phenotypic analysis

  • ADPglc transport assays indicated that transgenic lines expressing ZmBT1 alone or combined with GlgC exhibited higher rates of transport (approximately 2-fold), with the GlgC (CS8) and GlgC/ZmBT1 (CS8/AT5) lines showing elevated ADPglc levels in amyloplasts.


You can also add sub-section(s) at will.

Labs working on this gene

  • Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164 (B.C., A.T., S.-K.H.,T.W.O.); Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan (S.Sh., H.M., R.S., H.S.);
  • Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat–785013, Assam, India (S.Si.);
  • Department of Biological Production, Akita Prefectural University, Akita City, Akita 010–01195, Japan(N.C., Y.H., N.F.)


References

  1. ↑ Cakir B, Shiraishi S, Tuncel A, Matsusaka H, Satoh R, Singh S, Crofts N, Hosaka Y, Fujita N, Hwang SK, Satoh H, Okita TW. Analysis of the Rice ADP-Glucose Transporter (OsBT1) Indicates the Presence of Regulatory Processes in the Amyloplast Stroma That Control ADP-Glucose Flux into Starch. Plant Physiol. 2016 Mar;170(3):1271-83. doi: 10.1104/pp.15.01911. Epub 2016 Jan 11. PubMed PMID:26754668; PubMed Central PMCID: PMC4775147.

Structured Information