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| − | {{JaponicaGene|
| + | The rice '''''Os02g0570400''''' was reported as '''''DTC1''''' in 2016 <ref name="ref1" /> by researchers from China and Korea. |
| − | GeneName = Os02g0570400|
| |
| − | Description = Similar to Ent-kaurene synthase 1A|
| |
| − | Version = NM_001053721.1 GI:115446812 GeneID:4329724|
| |
| − | Length = 8408 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os02g0570400, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os02g0570400''''' '''''<=>''''' '''''DTC1''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | *'''''DTC1''''' is a key regulator for tapetum PCD by inhibiting ROS-scavenging activity. |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | ===Phenotypic analysis=== |
| − | AP = Chromosome 2:22622872..22631279|
| + | *Mutants defective in '''''DTC1''''' exhibit phenotypes of an enlarged tapetum and middle layer with delayed degeneration, causing male sterility. |
| − | CDS = 22623021..22623159,22623252..22623361,22625954..22626239,22626760..22626940,22627446..22627663<br>,22627979..22628099,22628171..22628268,22628362..22628573,22628667..22628779<br>,22628872..22628967,22629094..22629309,22629426..22629567,22629748..22629993<br>,22630546..22630857|
| + | ===Expression=== |
| − | GCID = <gbrowseImage1>
| + | *'''''DTC1''''' gene is preferentially expressed in the tapetal cells during early anther development. |
| − | name=NC_008395:22622872..22631279
| + | |
| − | source=RiceChromosome02
| + | You can also add sub-section(s) at will. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>| | + | ==Labs working on this gene== |
| − | GSID = <gbrowseImage2>
| + | *Department of Genetic Engineering and Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Korea(J.Y., S.M., Y.-S.L., K.-H.J., G.A.) |
| − | name=NC_008395:22622872..22631279 | + | *State Key Laboratory of Hybrid Rice, Shanghai Jiao Tong University-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China (L.Z, W.L., D.Z.) |
| − | source=RiceChromosome02
| + | |
| − | preset=GeneLocation
| + | ==References== |
| − | </gbrowseImage2>|
| + | <references> |
| − | CDNA = <cdnaseq>atgatgctgctaggttccccttcgtccggcggctacggcggaaaattcgccggagcttcaccggccggtgggacgacgaccatggcgccgtcagcaaagcagccgagcagcagagctcctcctcctgggatcactggagggcgcaatgacctgcgaattctttcgccagcagcagcagcagcagctgttggaggtcttgagatgaagaagccggaagcagaggggattgcagagagcctgcaagcgacgcacaggaaagaactcgaggcaagtataaggaagcagctccaaggagtggaattatcaccatccccatatgacactgcatgggtagctatggtgccactccggggttcgtctcacaatccaagcttccctcaatgcgtcgactggatactagagaatcaatgggacgatggatcatggagtattgacgggtccatatccacagccaacaaagatgtcctatcatctacgctagcatgtgttctggcactcaacaaatggaatgttggtagggagcacatcaggagaggactaagtttcattggaagaaatttctcgattgcgatggatgatcaagcagttgctcctataggtttcggcatcactttcccagctatgctaacccttgccaatgggtccggcttggaagtccccgtcagacaaaacgatattgatagtcttaatcaccttcgggagatgaaaatacaaagagaggccgggaaccattctcgtggaagaaaggcctatatggcctatctggcagaaggatttgggaaccttctggagtgggatgaaatcatgatgttccagaggaagaacgggtcattgttcaactgtccttcttcaactgctggcgcattagccaattaccacgacgataaagctctccaatacttgcaatctctagtcaataaatttgacggtgtagtgccaacactgtatccactaaacatatattgtcagctttcaatggtggatgcgcttgaaaacatgggaatatctcagtattttgccagtgaaataaagagcatccttgacatgacatacagttcctggttagggaaagatgaggaaatcatgttagacgtaacaacgtgcgcaatggcatttcgccttttaagaatgaacggttacgatgtttcctcagatgagctatctcatgttgctggagcttcaggcttccgtgattcgcttcaagggtatctaaacgatagaaaatctgtactggaagtatacaagacctcgaaacacagtatatcagaaaatgatttgatcttagatagcataggctcttggtcaggcagcctattgaaggaaatgctgtgctctaatgggaaaggaactccaggccgtgaagagatcgagtttgctctgaagtatcccttctacagcacattggaacgtctagtccacaggaagaacattgtgcttttcgacgctaagggctcccagatgctgaaaacagagtgcatgcctgttcatgacagtcaagattttctagctttggctgtcgatgatttctgcatctctcaatctaattaccagaatgaactgaattatctcgaaagttgggtgaaagacaacagactcgaccagctacatttcgcacggcagaagataacatattgctatctctctggtgctgccaccacattccgtcctgaaatgggctacgctcgcacctcgtgggcaagaaccgcttggttgacggctgttatcgacgatctcttcgatgttggtggattagaacaagaacaagaaaacctcctagcattaatggagaagtgggaagagcctggtgaagatgagtactactctgaagatgtaaagatcgtgttccaggctctttataatacggtgaacgagattggcgcaaaggcttccgcgttacaaggccatgatgttaccaagtacctagtagacgtatggctacatgtggtgaggtgtatgaaggttgaggcagaatggcagaggagccagcatctgccaacgttcgaagaatacatggaaagtggcatggtgtcacttggacagggctgtacggtgatgtcggcattgtttctgatcggagaaaagctcccggagggtattgtcgaacttgaagaatacgatgagttgttcaggctgatgggcacttgcggccgtctcctgaatgacattcgaggcattgagagggaggagtcggacggcaaaatgacgaacggcgtctcgctgctcgttcacgctagcggcggctccatgtccgtagacgaggccaaaaccgaagtgatgaagcgcatcgacgcctcacggaggaagctgctgagcttggtcgtcagcgaacaggaaggccctatcccgaggccgtgcaagcagctgttctggaagatgtgcaagattcttcacctgttctactaccagaccgacggattcagttctcccaaagagatggtcagcgcagtggatgcagtcatcaacgagccacttcaactcagattattgtag</cdnaseq>|
| + | * <ref name="ref1"> |
| − | AA = <aaseq>MMLLGSPSSGGYGGKFAGASPAGGTTTMAPSAKQPSSRAPPPGI TGGRNDLRILSPAAAAAAVGGLEMKKPEAEGIAESLQATHRKELEASIRKQLQGVELS PSPYDTAWVAMVPLRGSSHNPSFPQCVDWILENQWDDGSWSIDGSISTANKDVLSSTL ACVLALNKWNVGREHIRRGLSFIGRNFSIAMDDQAVAPIGFGITFPAMLTLANGSGLE VPVRQNDIDSLNHLREMKIQREAGNHSRGRKAYMAYLAEGFGNLLEWDEIMMFQRKNG SLFNCPSSTAGALANYHDDKALQYLQSLVNKFDGVVPTLYPLNIYCQLSMVDALENMG ISQYFASEIKSILDMTYSSWLGKDEEIMLDVTTCAMAFRLLRMNGYDVSSDELSHVAG ASGFRDSLQGYLNDRKSVLEVYKTSKHSISENDLILDSIGSWSGSLLKEMLCSNGKGT PGREEIEFALKYPFYSTLERLVHRKNIVLFDAKGSQMLKTECMPVHDSQDFLALAVDD FCISQSNYQNELNYLESWVKDNRLDQLHFARQKITYCYLSGAATTFRPEMGYARTSWA RTAWLTAVIDDLFDVGGLEQEQENLLALMEKWEEPGEDEYYSEDVKIVFQALYNTVNE IGAKASALQGHDVTKYLVDVWLHVVRCMKVEAEWQRSQHLPTFEEYMESGMVSLGQGC TVMSALFLIGEKLPEGIVELEEYDELFRLMGTCGRLLNDIRGIEREESDGKMTNGVSL LVHASGGSMSVDEAKTEVMKRIDASRRKLLSLVVSEQEGPIPRPCKQLFWKMCKILHL FYYQTDGFSSPKEMVSAVDAVINEPLQLRLL</aaseq>|
| + | Yi J, Moon S, Lee YS, Zhu L, Liang W, Zhang D, Jung KH, An G. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol. 2016 Mar;170(3):1611-23. doi: 10.1104/pp.15.01561. Epub 2015 Dec 23. PubMed PMID: 26697896; PubMed Central PMCID: PMC4775127. |
| − | DNA = <dnaseqindica>150..288#381..490#3083..3368#3889..4069#4575..4792#5108..5228#5300..5397#5491..5702#5796..5908#6001..6096#6223..6438#6555..6696#6877..7122#7675..7986#atggagaactaccgaatgaagtagatagagtagttcataccgctctcgttcgttcgcggctccttcctgctgcctgcctgcctgcctgcctgctgcgtttcgatcgatatcctctgcatgcaattctgaccgggtcgtcatcgtcgcgaatgatgctgctaggttccccttcgtccggcggctacggcggaaaattcgccggagcttcaccggccggtgggacgacgaccatggcgccgtcagcaaagcagccgagcagcagagctcctcctcctgggatcactggaggtagtagctagctagatctcgatagagctagtattattactgtaataatttcgtatctttctcacgttcataaaaacatatatatgtcgaagggcgcaatgacctgcgaattctttcgccagcagcagcagcagcagctgttggaggtcttgagatgaagaagccggaagcagaggggattgcagagagcctgcaagcgacggtaagactaattgcagaaattttgatggaagatctgttaaatttttgtccactagagacgtagttaatttgagatgggatgagtaaaaagttaacttattttgtgacttccataccacttacatcctatatacattataattaattacatgctaatctctactattataaaaattaaagatgtttttgccagtattttggtacatcatctgtgtatgagtcagtttttaagttcaattacttttgaaaatacatatctatatttgagttggtttttaagatcgttcacttttggtaatcatataagaaatctgtttaaaaaaactcgcatgctaacctgagacgatcggactcctaactgcagctcaggattttctaaaaatatatatatccaaccgaacccccacagtgaatttcatcttaactaaaccatataacaacaataagattaaaatagacttcacccgttgcaatacaatggcattttttctagtcctataataattataatataattatactataattatatttgacagattttgtaaggttttctgttgaatgatggatatgtagtcccttattttttaagttagggtgacaatactatagtttaatttggtggggtctcaaatttttaaatttggaaaccattgtaaggaaaagtattgattcaaaacataagcgcaagtattgatcccttgctatttgtttgcttagcatgcatgacagggacagtcttgtaggcgccatggtccatggaagttttgcaccttgcatgacttgttctggacacgtacgcatgcatatcaaagactggtataacagtgttctaaaaaaagactggtgtaacaggactaattagcatgagtcttctttgacaccgacttgtgtttgtcttatatacaatattagatacgcatatatttcctccgtttaacatttgtcattctagcattttccacattcatattgatgttaatgaatctagacatatatatctatctagattcattaatattaatatgaatatatgaaatgcttgaatgacttacattgtgaaacggaggaagtatatcgcaatcaacgaggtacacgcagtaaatattatgaccctttatatatatatatatatatatatatatatatatatatatatatatatatatatatatgacacaggtgattttttttaatgtttgataatatttagtgcaaatatgtaaaagtatatgttaaggttagagttaatttcatggatgataaaagaaatcataacaaaataaactatataattttttgaataattaatatgaatagtcaaatgttgaactaaaagataacagcgtcaaatattaaaaaaaaatgaagatgcatagtagattggatgtccaacttcttttcttcgttcgattccttaatttgttggagaactttcaaccatttaggattaatgaaagactgtttaggattttaactacgcaggattaatatatatggaggataataagagggtctccaattaattagtatgaaaaactacccaaacccatgaatccgtacatgctacgttttcgtcctatcttacgataaagatagaacccactaaatcctaaagttcaatatgcaaatatatcatattatcatcttctaacaattattatatcttaaatatcatacaagcatgctatattatctataattttattctataatttattaaattttagagctttaaaatgcaagcatgttaaaccaccatcctacataatttatataatattttaatatatcatctctccatcatttattataatatcctatatacatatatattttatcctcacataattagtattatttctctcttctataattaagccatatcacacaattatttctagctcttagatgattaatttatggtccaaattatcctgctctttttcttctcactataccaccttaattatttttaacccttaaatgactaacctattgtccaaattattccccttcttttcttctctcttaaaaccccatcactttatttttacatttaaatcatcattctatgtgctatttaaatcatcataaaccacatcaacttatgtaaacttatattatctagctatcttacatattatttttatctattgttattatactaaactcccgtagcaatgcgcggggtttcacatagtggattgaacaactaataccgtctcattatttactaatacagatttttagagtattacccgctctttaaaatattacaatttagattctaaactaagcacatcactatatgttatttttcgaatttttgaaatgactaaattataaaaagaactagtcgagaatttaggtcaggtacatctcaatatttgtatttcttgatagttaaatttattagtagttccgaattttcaaatcaataaaataaaataatatattgagacaataagcctaacacaatgcaacttgatattttcaatacacaattgttattgtatatagaaaaaatatatggatcttgcactatatcctttgttgagttcattatatattgttgtgatgaacgctgcagcacaggaaagaactcgaggcaagtataaggaagcagctccaaggagtggaattatcaccatccccatatgacactgcatgggtagctatggtgccactccggggttcgtctcacaatccaagcttccctcaatgcgtcgactggatactagagaatcaatgggacgatggatcatggagtattgacgggtccatatccacagccaacaaagatgtcctatcatctacgctagcatgtgttctggcactcaacaaatggaatgttggtagggagcacatcaggagaggtaacatatatcaatatttatatatagatacacttaacaagttaatgttcatttctattttctttaaacatttttatactcattgaaatttgggttatactcaatttaaaacttagagcccaaacaccatagtacctcagttaatttctctcagtttggtgtgatatggtaatttaaaacttagagcccaaacaaaccatatcacaccatgcatggttggttatgttaaccaaacaaacaccatgcatggttatgttatagctaaaacaagcttgggtaataaaatctttactgtaagagaaatcattgtcaaatacttctattaagtctattagtttttttttttactacgggatacctacatattattgaaattttcatgatgagatatattttaggactatatgtcgcagtaaagatttaactatacgagggtacctttcaacctttccacattaattgctttaatcatatcttactcttaaacgtcttaattaatcctatggtacgacggctgcaggactaagtttcattggaagaaatttctcgattgcgatggatgatcaagcagttgctcctataggtttcggcatcactttcccagctatgctaacccttgccaatgggtccggcttggaagtccccgtcagacaaaacgatattgatagtcttaatcaccttcgggagatgaaaatacaaaggtttaattgccaatatcaaagtttatcctagaatggatatttatattgtttccgaataagtttataacaatttccaagcacatcaactttttaaaactagataaaactgatcatccgccaactttttttaaaaaaatgaaccttttcagctaaaattgtaaaactaataatctctgaaactattttttttacacataatttagccacgatgggctacgggtgcgtggcaacattgtttgccaccaatccaaggcagaatgatcaaacaactgctacgccatggaaaaatatgaataaacctagcccatgcattaaattgcgttagctcaaagtaaaagaaaagacctgaacatttattagctagccaactgggtaattattaatttcaattttacaatatatttttttgacaaaataataatacaaacgagattgcaaacgattgatttgacgtatatctgagttacaagtaaattatcctgaatgttttgattcattaatttagagaggccgggaaccattctcgtggaagaaaggcctatatggcctatctggcagaaggatttgggaaccttctggagtgggatgaaatcatgatgttccagaggaagaacgggtcattgttcaactgtccttcttcaactgctggcgcattagccaattaccacgacgataaagctctccaatacttgcaatctctagtcaataaatttgacggtgtaggtgagtttgtatatatacttctccttccgattcttttatttaaaaaaattactctgttaattcacttttaacgtatgtttgaccatttaatttatccaaaaaatacataattattatttattttgttgtgaattagtttattattaaacatattttgagcatgtgattttttttatatttgcataaaattaatgttttgaaaaaacgaacgatcaaacgcatgtttatccaatgaataacagggggcagtatcaagaacttgctacattctgttattaattaagtacttactaatacagtagtacattgttgcagtgccaacactgtatccactaaacatatattgtcagctttcaatggtggatgcgcttgaaaacatgggaatatctcagtattttgccagtgaaataaagagcatccttgacatgacatacaggtaataacctcgaataaatatttctgtttgtttgtatatatgagctcaaatattgatgatcaagtttacagttcctggttagggaaagatgaggaaatcatgttagacgtaacaacgtgcgcaatggcatttcgccttttaagaatgaacggttacgatgtttcctcaggtgcgttcgaattctggaatttgatcttatttcatattggggttcatctagaatttcttttgatttaacgtatttgattaaaatacgttgcagatgagctatctcatgttgctggagcttcaggcttccgtgattcgcttcaagggtatctaaacgatagaaaatctgtactggaagtatacaagacctcgaaacacagtatatcagaaaatgatttgatcttagatagcataggctcttggtcaggcagcctattgaaggaaatgctgtgctctaatgggaaaggaactccaggccgtgaagaggttcttgccttcaatttgaaattcccatttggccatttcgcttcagacagctcagtttgtgtttaaatgagaatttcgcttttgtaatttcagatcgagtttgctctgaagtatcccttctacagcacattggaacgtctagtccacaggaagaacattgtgcttttcgacgctaagggctcccagatgctgaaaacagagtgcatgtaaggctttcatcgaaaatatgcaaaatctgagtaaataaaataacacatgaggtactaattcccttatgcttcttactgtactcgatcaggcctgttcatgacagtcaagattttctagctttggctgtcgatgatttctgcatctctcaatctaattaccagaatgaactgaattatctcgaaaggttggtgttccaggccgttgtcatgttattattccttttttttaaaaaaaaacaactcaagatcaatactgttccaatatggttctaacctagacaaattgccaaaaaaaaaaactttttttacagttgggtgaaagacaacagactcgaccagctacatttcgcacggcagaagataacatattgctatctctctggtgctgccaccacattccgtcctgaaatgggctacgctcgcacctcgtgggcaagaaccgcttggttgacggctgttatcgacgatctcttcgatgttggtggattagaacaagaacaagaaaacctcctagcattaatggagaagtaattaattaatatgtcttcttttttctcaaaaatgttgccatgttttatatctctagcgagctagctagctaatttatcttctctgccatgcaaaaaatggttctcatatataggtgggaagagcctggtgaagatgagtactactctgaagatgtaaagatcgtgttccaggctctttataatacggtgaacgagattggcgcaaaggcttccgcgttacaaggccatgatgttaccaagtacctagtagacgtagtgagtcactctcgtttttgcgcgattgcttgaattttttttgttgcatactccctctgtcgtaaaatataaggcactcccatctgtccaaaatccgttatattttggagccgagggagtattcgcttacttccggttaatattaacaagttagaattctctctatatatgtatctgcagtggctacatgtggtgaggtgtatgaaggttgaggcagaatggcagaggagccagcatctgccaacgttcgaagaatacatggaaagtggcatggtgtcacttggacagggctgtacggtgatgtcggcattgtttctgatcggagaaaagctcccggagggtattgtcgaacttgaagaatacgatgagttgttcaggctgatgggcacttgcggccgtctcctgaatgacattcgaggcattgaggtacgtactttgtgacagaaagtccatgctgtccttgtcctcttttttttttcaaaattttggtagatatgcaaattaaaaattttaaggtgtaagtaatccgtaagattgtgtatttattagttccaacggagaaaatctggtacgacatttctaaggccctaattattaacaaaaatttcacaaactgcggttattttatcaagattatctttttgtgcaattttgaccggaagttcataaaaattaaaaaaaaacaattttatcataaaactacaactttataccctgtatatatgtgtgtgtgtctaacatgtagagttgtagaactaactttcaaaatcaggtattgttttagttctatgaaatgcctagctaaagactgtaattttgataaaatagttataaatgtttttcttttaaaaaaataatttaattattactctaatttgttttggaaatactagtaattagccatggttgctagctgctggtcagttaattagagcttgcaagttctgacgaagcattgcttctcaaattgcggcgcagagggaggagtcggacggcaaaatgacgaacggcgtctcgctgctcgttcacgctagcggcggctccatgtccgtagacgaggccaaaaccgaagtgatgaagcgcatcgacgcctcacggaggaagctgctgagcttggtcgtcagcgaacaggaaggccctatcccgaggccgtgcaagcagctgttctggaagatgtgcaagattcttcacctgttctactaccagaccgacggattcagttctcccaaagagatggtcagcgcagtggatgcagtcatcaacgagccacttcaactcagattattgtagattcatctctgtcactttttctttttttttttttggatactaaagtactaccagtgttgcatgtaaaagctgaggtaatcagaatgtggatgacttagttgggattacacagtttgatcgatggccgcactaatctggttcataattttcaccggtttgtggacagagtggaaccatatataagagagtagaggatggtcgtcgtccatactcaaatttgttaggatttgcgtcatgtatgttatatgaaagagcaaataaatacataggttaggtatgtgtaataaacagagatacgatgtaagtatccagagctggtggctaccagaacaacataatcgtacatctttggggtatgttgtcacgacctagcacaggatgtaaattgtacactccatcccaagaaaaaacctacttctgag</dnaseqindica>|
| + | </ref> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001053721.1 RefSeq:Os02g0570400]|
| + | </references> |
| − | }}
| + | |
| − | [[Category:Genes]] | + | |
| − | [[Category:Japonica mRNA]]
| + | ==Structured Information== |
| − | [[Category:Oryza Sativa Japonica Group]] | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 2]] | |
| − | [[Category:Chromosome 2]]
| |
