|
|
| (14 intermediate revisions by 4 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''''Os01g0104100''''' was reported as '''''OsCOIN''''' in 2007 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os01g0104100|
| |
| − | Description = Zinc finger, RING-type domain containing protein|
| |
| − | Version = NM_001048297.1 GI:115434007 GeneID:4326292|
| |
| − | Length = 4403 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os01g0104100, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:Fig.2zxy.png|right|thumb|327px|'''Figure 2.''' ''Snapshot.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os01g0104100''''' '''''<=>''''' '''''OsCOIN''''','''''COIN''''' |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
| + | * The rice '''''OsCOIN''''' encodes a putative RING finger protein. |
| − | AP = Chromosome 1:208771..213173|
| + | * '''''OsCOIN''''' (Oryza sativa cold-inducible) is a novel cold-inducible gene in rice. It can increase tolerance to chilling, salt and drought, and enhance proline level in rice. |
| − | CDS = 209283..209563,209659..209890,210015..210160,211265..211352,211433..211579<br>,212490..212639,212741..212788|
| + | |
| − | GCID = <gbrowseImage1>
| + | ===Phenotypic analysis=== |
| − | name=NC_008394:208771..213173
| + | * Over-expression of '''''OsCOIN''''' in transgenic rice lines significantly enhanced their tolerance to cold, salt and drought, accompanied by an up-regulation of OsP5CS expression and an increase of cellular proline level. |
| − | source=RiceChromosome01
| + | ===Expression=== |
| − | preset=GeneLocation
| + | * '''''OsCOIN''''' is expressed in all rice organs and strongly induced by low temperature, ABA, salt and drought. |
| − | </gbrowseImage1>|
| + | ===Subcellular localization=== |
| − | GSID = <gbrowseImage2>
| + | * The subcellular localization analysis showed that '''''OsCOIN''''' is localized in both nuclear and cytoplasm membrane |
| − | name=NC_008394:208771..213173
| + | |
| − | source=RiceChromosome01
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Institute of Botany, Chinese Academy of Science, Beijing 100093, China |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>atgagctctctatgcccctttgccaaactcgcctccgctggcgccacatgccccgtaaaatcatcatcagacaacaaaaccaccatcaatcacaccgacgacgacgacgacgacaatgaaaaaactggcaatgctaacaccgatcctcgtgtggtgccaccaaagtgcccctttggctatgactccaacaccttcaagcttggcccactcagctgcatggtctgccacgctctgctacatcaaagcagcaaatgcaccccgtgctcccacaagttctgcaaggcatgcatattgcgctttaaggactgtccattgtgtggtgctgacatccaagggatcgagcccgatgatgagcttcaaggccttgtcgaccgcttcattgatggccatgcccgaatcaagagatcacatgctgcaggcgatggggaagccgcaagtgacaacaagaccaaggtcatttacgaggatgtctccatggagagaggggcttttctggtccagcaagcgatgagggcctttcgcgcacagaacattgaaagtgcaaagtcaaggctcagtatgtgtgcacaagacatcagggaagaattgaaatctaaacaagacaaccaagaactgtgttctcaacttggagctgtgttaggaatgcttggggactgctgtcggaccttgggagatgctccttcagcaatcacttactatgaagaaagtgctgaattcctctcgaaattgcccaaaaaagatctggagttggtccatactctctcagtttcactaaataaaattggagatcttcgctattatgatggggacctccactcagcaagaagctattatgcgcgttcgttggatgttcgcagaagtgcagcaaaagaacactcagctgtggcttcccaggtcattgatgtagcaacttctcttgccaaagttgcggatgtcgatagaaatcttgggaacgaaagcatggcagttgagggttttgaggaagcaattaaatgccttgagaatttgaagctggaatctggagaggccagtcttgagcagcggcgtctctcggttctcgactttctacaaaaacaattggatgacaagtga</cdnaseq>|
| + | ==References== |
| − | AA = <aaseq>MSSLCPFAKLASAGATCPVKSSSDNKTTINHTDDDDDDNEKTGN ANTDPRVVPPKCPFGYDSNTFKLGPLSCMVCHALLHQSSKCTPCSHKFCKACILRFKD CPLCGADIQGIEPDDELQGLVDRFIDGHARIKRSHAAGDGEAASDNKTKVIYEDVSME RGAFLVQQAMRAFRAQNIESAKSRLSMCAQDIREELKSKQDNQELCSQLGAVLGMLGD CCRTLGDAPSAITYYEESAEFLSKLPKKDLELVHTLSVSLNKIGDLRYYDGDLHSARS YYARSLDVRRSAAKEHSAVASQVIDVATSLAKVADVDRNLGNESMAVEGFEEAIKCLE NLKLESGEASLEQRRLSVLDFLQKQLDDK</aaseq>|
| + | <references> |
| − | DNA = <dnaseqindica>513..793#889..1120#1245..1390#2495..2582#2663..2809#3720..3869#3971..4018#gtggttggcaaatcaatcgaatcgatcccctctcatccgctcgcggacacagaatctctcctctccctctcggcgcccaggttctcgccgccgcccgccccttccttctcttctcctcctacgtacgtaagtatcgattccatgcccccctcccccatcccccatcatcatacgatttctagggtttcatgcatcggggatgaatcgtccatgcgatttaattctattccctattactatattataatcgtatatagagattgatagatagatagatagatagattcttcttacaacaagaagaataaaccaaccccaattttttcccaacctctatctaataatcaagctgctccctactttaacaatctctctcattcttctcaattcaattctactactgtactgcatttagtctcatgcttcattgaattttcactcaactgcttgccaccaatctttctttcatgcaggtaaataatccacctacgatagatacgaccaaccccattatgagctctctatgcccctttgccaaactcgcctccgctggcgccacatgccccgtaaaatcatcatcagacaacaaaaccaccatcaatcacaccgacgacgacgacgacgacaatgaaaaaactggcaatgctaacaccgatcctcgtgtggtgccaccaaagtgcccctttggctatgactccaacaccttcaagcttggcccactcagctgcatggtctgccacgctctgctacatcaaagcagcaaatgcaccccgtgctcccacaagttctgcaagtgcgtagtatcatatttcaatactagctttctactagtaattccttccgtccgtcaatagtatataccttctgaacactggatttccttgtcagggcatgcatattgcgctttaaggactgtccattgtgtggtgctgacatccaagggatcgagcccgatgatgagcttcaaggccttgtcgaccgcttcattgatggccatgcccgaatcaagagatcacatgctgcaggcgatggggaagccgcaagtgacaacaagaccaaggtcatttacgaggatgtctccatggagagaggggcttttctggtccagcaagcgatgagggtcagttacgctcagcttcttttacctttgaaatttgcatatatccttcatcctctgctctgtattaatttattaatgctctctatatatattttgataatacctctgacttttacatatccaggcctttcgcgcacagaacattgaaagtgcaaagtcaaggctcagtatgtgtgcacaagacatcagggaagaattgaaatctaaacaagacaaccaagaactgtgttctcaacttggagctgtgttaggaatgcttggggactgctggtacgacaattttctcttggggactggaggatatatgtgaacctgctattgatacgtttatagcctactcctactccctccgtgtctaaataatttacatgtttgactttcccatttaaactttgaccattatttgctcttaagttgttagacctaattgaacaaaagtttgattcttatatttaggacataacacactttaatagcatggcatcatttcttgtgtttgtaaatatataacaaaaatactagtggtcaaagttcaaaagtgaatcgtgcctgctatcagtcatttaaaaacgaagggagtattgagctaaattcttgcatgctttttttttcttctaattgagagaacagttcttaactttgaaatgtctgtagctttcctcaaaagaagagagatgctcaatgctttgtatctgttgtgcacgagggcccattctagccttggcccgttcatctttctgctcattcagggcctagttatctttcatgtgttctaatacctgaattttctatgttttgactaggcatagaacttgccttccgaacaagggaaaggtgaatcttgttgtaataacgtttgttctccattaaaatattaaactgttatgtgcctcagcgtgttctacaatactgatgcacagaccacagaggttgtctagcaggttgtagactgatagtgatgccaattatgactggtcgcaattcgtctgaatagaagtatattcacagctcggaaaacgtgggaaacctttaaccatgccctacaccagccagcatactgatgccaatagcaagctgatagcttgtgtaatagccagctaccagctaccaagagcctagttctagtcaggatgtctggtacctgctcatataaaagcctcagggtctgtcataagttgttgctgaactcattgtgtttccatgtcactggacggtgttttgtttttatccctatgttataatatctggctgaactttttccatgaatttcattgtgctctattatttttcataatatttgtgacacataaccatggcagtatttagcttattttttctttgtttgttcacaattgacctcattccatgccacagtcggaccttgggagatgctccttcagcaatcacttactatgaagaaagtgctgaattcctctcgaaattgcccaaaaaagatctggaggttgtattttgttgttaatatgatcataatagcatgatagtaagttctcatgttgatttaacttttgcatacatctacagttggtccatactctctcagtttcactaaataaaattggagatcttcgctattatgatggggacctccactcagcaagaagctattatgcgcgttcgttggatgttcgcagaagtgcagcaaaagaacactcagctgtggcttcccaggtaattactgtgttactgattaagattagctataaatacaaaatgggctgcagttatcatcttagaaacagaaggaaccttattcatcactctcttttgtccctgctcttttgtgctagctcttccatatcattacgctagtagatgtatcttatatgttccatgaaaatgatatcaacagatattgatcaaaagttcttccttatcttagatttttattatacaggcataattagaaatgttaagtgtttaaatgtgtattagataccatatcaatgagcgctccaattgcacatggaccagtagctattttatcccataattcatggtcctggtactgattgacattgcacataatacatactagtaggcagagaaaaatggatgtaaaaaaggggttcctacacagaatttttgtattcctttctctgaagcaaattgttgtctgaagtctgtggtagcaagtgccagaccatactaggaagtttggcaatttgccataaatgatggctacagatcttttaacctatatttatgcttgttcccaattcaaccgtgccaataaaattgtcaataccattgagatgatggctttatttcattacttagtctgtggccaaaaaattggcactgccaaaattttggtaatgaaaaccaattaaaacgcgtacacataaaaagtattggctacaaaccaaatgaacaacttcacagaaatttgtacaacacacaaaatggttgcaaaccaaacaagccctttatcttctctaaattttaatgtcagtagaaccaaaagaagataacaaagcattttgtaagattgtggtaggctttagctgctacatggaacagacatattcttgagtgttttttcttttgctgttcatgatctgtctacttgtggatataggtcattgatgtagcaacttctcttgccaaagttgcggatgtcgatagaaatcttgggaacgaaagcatggcagttgagggttttgaggaagcaattaaatgccttgagaatttgaagctggaatctggagaggccagtcttgagcagcgggtagctactacttatccttgtgtactgcctttcatccatgcgctcctatttgtggtgctctcgacgactgacttttatcatgtactgtaatacttttgcagcgtctctcggttctcgactttctacaaaaacaattggatgacaagtgatatgcacggttctaatttgaagagcacactcacaggatatatgcactatccataatgaggatcagctccagtacgtagtctctgtgatgcatatggaagggagttgctccagatcgaatgaatggtaactggtgtgtatttgaggtttgctgcgacacagaataaatactttcgagttgtatatgtttcttgtgtctgccacgggtggagacctctttgagtccctgaggcaccacggagacgaaacttctcggaagtactgattccttgttgcctctgccgtgttatgtgaatgttatcccactgtatatttattgatgatataatataagaaaagaacagcacagatgttttgtatcgccctatcaaatttaagttgttttgc</dnaseqindica>|
| + | * <ref name="ref1"> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001048297.1 RefSeq:Os01g0104100]|
| + | Liu K, Wang L, Xu Y, Chen N, Ma Q, Li F, Chong K. Overexpression of OsCOIN, a |
| − | }}
| + | putative cold inducible zinc finger protein, increased tolerance to chilling, |
| − | [[Category:Genes]] | + | salt and drought, and enhanced proline level in rice. Planta. 2007 |
| − | [[Category:Japonica mRNA]]
| + | Sep;226(4):1007-16. PubMed PMID: 17549515. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]]
| + | </references> |
| − | [[Category:Japonica Chromosome 1]] | + | |
| − | [[Category:Chromosome 1]]
| + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
