|
|
| (2 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''''Os01g0377500''''' was reported as '''''Orysa;CycL1;1''''' in 2006 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os01g0377500|
| + | ==Annotated Information== |
| − | Description = Similar to Ania-6a type cyclin|
| + | ===Gene Symbol=== |
| − | Version = NM_001049618.1 GI:115436649 GeneID:4325450|
| + | *'''''Os01g0377500''''' '''''<=>''''' '''''Orysa;CycL1;1''''' |
| − | Length = 6273 bp|
| + | ===Function=== |
| − | Definition = Oryza sativa Japonica Group Os01g0377500, complete gene.|
| + | * Cyclins, the known activators for activity of CDKs, play crucial roles for cell cycle progression in eukaryotes.<ref name="ref1" /><ref name="ref2" /> |
| − | Source = Oryza sativa Japonica Group
| + | * In plants, cyclin binding not only activates CDKs by inducing a configuration alteration at the catalytic sites, but also contributes to the subcellular localization and substrate specificity of the complex as well as regulation of protein stability.<ref name="ref1" /><ref name="ref2" /> |
| − | | + | ===Evolution=== |
| − | ORGANISM Oryza sativa Japonica Group
| + | * Phylogenetic analysis indicated that both Arabidopsis and rice shared eight types of cyclins, A-, B-, D-, H-, L-, SDS-, T- and P-type, whereas C- and J18-type cyclins were specific to Arabidopsis, and F-type cyclins, lacking clear homologues in Arabidopsis, were unique to rice.<ref name="ref1" /> |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Knowledge extension=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | * Similar to animals and yeasts, cell proliferation in plants is mainly controlled by a family of cyclin-dependent kinases (CDKs). The activity of CDKs is directly regulated by binding and activation of cyclins as well as other mechanisms that consist of protein phosphorylation/ dephosphorylation by specific kinases/phosphatases, proteolysis, CDK inhibitor protein (CKI) binding, etc. |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | * Cyclins were initially discovered in marine inverte-brates as proteins that accumulated at specific time points of the cell cycle and were subsequently degraded quickly.<ref name="ref1" /> |
| − | |
| + | You can also add sub-section(s) at will. |
| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
| + | ==Labs working on this gene== |
| − | AP = Chromosome 1:15849886..15856158|
| + | * Rice Functional Genomics, Joint Laboratory of Temasek Life Sciences Laboratory of Singapore and Institute of Genetics and Developmental Biology |
| − | CDS = 15850147..15850208,15850286..15850327,15850412..15850787,15850866..15851127,15852672..15852838<br>,15853024..15853164,15853255..15853336,15855711..15855862|
| + | * Institute of Genetics and Developmental Biology, The Chinese Academy of Sciences, 100101 Beijing, China |
| − | GCID = <gbrowseImage1>
| + | * Rice Functional Genomics Group, Temasek Life Science Laboratory, 1 Research Link, The National University of Singapore, 117604 Singapore, Singapore |
| − | name=NC_008394:15849886..15856158
| + | ==References== |
| − | source=RiceChromosome01
| + | <references> |
| − | preset=GeneLocation
| + | * <ref name="ref1"> |
| − | </gbrowseImage1>|
| + | La H, Li J, Ji Z, Cheng Y, Li X, Jiang S, Venkatesh PN, Ramachandran S. |
| − | GSID = <gbrowseImage2>
| + | Genome-wide analysis of cyclin family in rice (Oryza Sativa L.). Mol Genet |
| − | name=NC_008394:15849886..15856158
| + | Genomics. 2006 Apr;275(4):374-86. Epub 2006 Jan 25. PubMed PMID: 16435118. |
| − | source=RiceChromosome01
| + | </ref> |
| − | preset=GeneLocation
| + | * <ref name="ref2"> |
| − | </gbrowseImage2>| | + | Wang G, Kong H, Sun Y, Zhang X, Zhang W, Altman N, DePamphilis CW, Ma H. |
| − | CDNA = <cdnaseq>atgatctacacggcgatagacacgttctacctgacggacgagcagctgcgggactcgccgtcgaggaaggatgggatcgacgaggccaccgagaccgccctccgcgtctacggctgcgacctcatccaggagagcggcatcctcctcaagctaccacaagcagtgatggccacagcacaagtattgtttcatcgtttttactgcaagaaatcatttgttcggtttagcgttaagagagttgctgcaagctgtgtttggctggcagggaagttggaggagagtccaaggagatcaaagcatataatcattgtcttccatagaatggaatgtaggagagagaacgtaccaatagaacacttagatgtgttttcaaagaaatactcagacttgaagcatgatctggtaaggacagaacgccatctgctgaaagagatggggtttatttgccatgtagagcatcctcataagttcatatctaactaccttgcaacacttgaagcccccgaactgacgcaagaggcatggaaccttgccaacgatagcttgcggacaactctatgtgtaagattcaagagtgaagttgtagcatgtggagttgtgtatgctgcagcaaggaggcatggcgtgcccctccctgaagatcctccctggtggaatgtgtttgatgctgatgaggcaggaattcaggaagtttgcagagttcttgctcatctctacagcctccccaagtcacaatatatacaagtgtataaggacaatgattccttcacgcataggaggacttctgatacaaatgcttcaaaggaaagtcctgcaacgactgttgcaagcgataagggtacccctgtaccgtcaagttctagccaggaaaaggatgcactgattaaggcagggtcagataaggtgaaagaaaaaggtgacgatgatgggaagacgttaccttctgaacccaatggtaaagaaggccctgcagtgaatttgaagagtgagaagtcagaatccaatgttgatcgctctcgggaaagagaaagagatagatcaagagggcgggaccgtgatagcaggggccgggactctgatcgtgatagcaagggcagggactccgatcgggagagggagcgtgatagagaagcagacagggataggcagcggagacaccattctaaggacagaagttcaggatactctgacaaagagaagtcaaggcaccgctcatcaagagatcgtggtgatcactacagttcgcactcatctcgtgacaaagatcggcacaggcggcagtaa</cdnaseq>|
| + | Genome-wide analysis of the cyclin family in Arabidopsis and comparative |
| − | AA = <aaseq>MIYTAIDTFYLTDEQLRDSPSRKDGIDEATETALRVYGCDLIQE SGILLKLPQAVMATAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEESPRRSKHII IVFHRMECRRENVPIEHLDVFSKKYSDLKHDLVRTERHLLKEMGFICHVEHPHKFISN YLATLEAPELTQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRHGVPLPEDPPWW NVFDADEAGIQEVCRVLAHLYSLPKSQYIQVYKDNDSFTHRRTSDTNASKESPATTVA SDKGTPVPSSSSQEKDALIKAGSDKVKEKGDDDGKTLPSEPNGKEGPAVNLKSEKSES NVDRSRERERDRSRGRDRDSRGRDSDRDSKGRDSDRERERDREADRDRQRRHHSKDRS SGYSDKEKSRHRSSRDRGDHYSSHSSRDKDRHRRQ</aaseq>|
| + | phylogenetic analysis of plant cyclin-like proteins. Plant Physiol. 2004 |
| − | DNA = <dnaseqindica>5951..6012#5832..5873#5372..5747#5032..5293#3321..3487#2995..3135#2823..2904#297..448#aaattctccggcgtttccagttcaaaaataaaaaataaaaaatctccggcgcaaatcctcctctccgccgccgccgcctccacctccaccgctcgccccctcgccgcgcctccactcctcacaccacgctcctcctgacctcctccctcgcgcttctccggcggcgcctcgctcctctgcgcggaccgttgcccctggccgagcgcggcgcggcgcgggccgcccgcggggggatcgggctcgggtagaggcgggcgacctggcgggggaagtaaggggtcgcgcgtggcggggagatgatctacacggcgatagacacgttctacctgacggacgagcagctgcgggactcgccgtcgaggaaggatgggatcgacgaggccaccgagaccgccctccgcgtctacggctgcgacctcatccaggagagcggcatcctcctcaagctgtatccttctgcccctcctcccagatccccccaccttttcccgccttgttcttatgcccaagtcaaatcgttaggggtctctcaagcatgctagggtttccagcggttcagtgattaccatccatgtttactagcgctcgctgaatcgcaattgatagggttatttggtttgcttagttttagttcgaacgttgtgctttggattagggttttggttttgtcagattagagatgcttctcttttatattatccagctaaactaatgaaaatgtcaatgttttctctttcttttcggagtcttatgtttttttttcaatgtagaccaatacatcatttattcagtttgatgttctcaagaagattaacattatataaggttacacgcatcactgaatcttgataattttgattccaatgaaaaaaaatgcaaataaatgtgttatgtttctttgtttatgatataggagaaaatgaggatctcttgggcttacttaaggtgataagttgttccaggacggttgatagttgccattgcattttgtttgtagaattttgtcttttcatgccattcaggtcatctgtttttaacaaagttcacaagcttgaaatctgtaaatttttgttgggcaaggaatcaggatgatatgggtattaatcagtgtgctactcacatatattaggttatgcactgttgcatggttttttctgtttaatgaaatatgatggaaacagttgtcggttgctgggctgaatgaagtggtacttgtagtaaatggtgctcgctacaccatcttatcttctgccttgcagaggtaaaataaattggatggaattgatagttgatgtaaaatacataaaatttgtcttctcaagccattcaggttatcagattttcacaaaatgcacaagtttgaaatgtgtaaatttttattgggtcaggactcaggattatgtgggtatggatcagtgtgctacccacatgttttaggtatgcattgcctcatgatttttgctggttaatggaatatgatggaagcagtaggagttggttgctagggtgaacgaagtggtacttaacttgtagtaaatggtgtttgcaacgccatcttatcttctgccttgcagaggaaaaacaattcggatggaagagagagttgttgcatatattaggctactttataaattatatactataagtaaaaacctttttctcatactgacctatttaggagagggaacaaatctataagtcaaatagtggatggatcacatgcgtgtccatgtttttacatcgattacaaatttgaatattctcatatctgaggttgaatttagatatcatcattgttttaacatgaaatgatccaaaatgccagaacatgaaatgtgcatcctatggagtatttgggaagcactgaaagtacactctgtggagtggcaaaaatgtttttcactctgttttgttagacatgccacatatatcttcattgcattttctagttaaaatagaaaagagcataatacaacatatccaatggaaaacattaaaccatatttgcatctgtcaaatctagatgagtggcttatgaattgggtagcacaacaaagaaacaacagttgtggtcaagccaccatatttgcatccattctatttcagatgtcaaataatttagttagtcagatgtccaaccaaactaggggtatcaatcggatacgaattatctgtagactacacaattctttaggttaaaatatggtttattatttccatcggttaaatagtttttccctctatttgattgtgtatatgtgttctacatttccaaataatgttatctgagccgtttgtattcaataaacaatatacatattttattgtagtttgcctaacagttttttctttttatgttttttccctgttcactcaatttaatataattattagttatgttttctaagaggttaaacgtccttaatatcatactgctacataaattacatggatattgaaaatccaactgaattacttatgtgtttgtttcatatttttattcatcacaacaatcagttttcctttttagtccgtgtgagcgtatttgaatatcttttgttatgtgcttaaaacatgagcatgaatgtgtaaagaccttactcgattcttattagatctgttgacatccctaccccataccgtatttcatgttgccacaattgatgtagcaaatcttcaaagatatctagttgggagatagtgattttcataattttctatgtagcttgaatttagctaggccccattcttgcaacttttattttcttttcttttttaaaagtataatatttgcatgtggtggattccttgacgcaccaaagaccacaagcagtgatggccacagcacaagtattgtttcatcgtttttactgcaagaaatcatttgttcggtttagcgttaaggtaagcaaatcttttgtctcagttactctgatcaaaccagtctttgattttatgagttgaaccaatgaatatctctgtttatgcttgcagagagttgctgcaagctgtgtttggctggcagggaagttggaggagagtccaaggagatcaaagcatataatcattgtcttccatagaatggaatgtaggagagagaacgtaccaatagaacacttagatgtgttttcaaaggtttatctgtttctttactctctgtttattttaaatattttttgaacctttgtgcacttcaaatcttgatgtctctagttcttgctctcttgctgctagagctgtaatacctatgcttttttttagaaaatatgtaacttttataaagaattatgctaattgaaagctgtaactatttgttgcagaaatactcagacttgaagcatgatctggtaaggacagaacgccatctgctgaaagagatggggtttatttgccatgtagagcatcctcataagttcatatctaactaccttgcaacacttgaagcccccgaactgacgcaagaggcatggaaccttgccaacgataggtacttcatttgaactaaacttaccttattgtagttagatattcttattgaattttatgcagttcaattatatcttactcttaagtcttaactagttttttatagtccttgggaggtatttctagttgtagactattaaggctgtgttcggcagcttgtgttcccaacccctctccctcgttttctgcgcacacgcttttcaaactactaaatggtgtgtttttttgcaaaaaaaattctataggaaagttgcttaaaaaaatccatttattaagttaattttagctaatacttttttaattatgcgataataagctgttacgttttccatgccggagggatagactcccaactggcacaaacgaacacagcctaattgtacctgttatcttataatacctcccaaggaccaaaaataataatatattctaccttattggtgaaattttgttttagtttagaattattggttctcttaaaagatttttccagcattgctcttgacttttctcttatagtactttgtttgtctcgcagatccttaccatttctaattaactattgaaaagcttgactaagtgataccttttattttctgtagtcatctgtctgtatcatgtcatatatgtacatgaatccttaatattctgatcagtgtaaattatgaatgagttgcctgtagtttcagaatgtaccaatttgctaattgcaacagcaaaaatcaaataggggctaaaatgctaaatgaactgtattctggacatatagttctcccttatgctatcatatgtatagagttgtagatagtgctctggtacagaatgataacagttaacaaataacaaatcttcccatgacagtgataagatccagttaacctagtgcaggtttgtagtttcagcaatatgaatgcagcattgttaaaggtgcccttagaccaaaacaagccttcaataataatcgcattagcttttggattttgaaaacttagtcacatatgctggcccaaattacaaggagtatgattatgctgtagaacttgtggatgaacttgatggccaatacaatatttttttataaaaaatatgagtatgttaccaaaatgttgttagctgatgatcagccttacacttcattggaagattatcatgtatgttgtatgaaaatctcatttatatctcttagcttcagtaagataagtggaagagaagaaaagaaagcaagggaaatgtaacgtgttagcactcttggtctaatgcaaccagaatttattgtgcctttaccgagatgacttttattttttttttcatgtaatagtatatttagatgaccaacctatttgccaagatgatgcctgtcagccatctcataaggaatgcatgtgtcaaaatattttaaaacttcaagtctgatcagtcaggatttagtgtaccataaaatagatttattatcaaggcttactgcttttgccttgagctttttcaatcatactgagagttgagttcaatttgcacttctaattcaatgcgtattttgcataacagcttgcggacaactctatgtgtaagattcaagagtgaagttgtagcatgtggagttgtgtatgctgcagcaaggaggcatggcgtgcccctccctgaagatcctccctggtggaatgtgtttgatgctgatgaggcaggaattcaggaagtttgcagagttcttgctcatctctacagcctccccaagtcacaatatatacaagtgtataaggacaatgattccttcacgcataggaggacttctgatacaaatgcttcaaaggttaaaaagaatgattggactcgctaagtttaatttaaaaaattgttaccgatgtcatttttttgtactcacgtgcaggaaagtcctgcaacgactgttgcaagcgataagggtacccctgtaccgtcaagttctagccaggaaaaggatgcactgattaaggcagggtcagataaggtgaaagaaaaaggtgacgatgatgggaagacgttaccttctgaacccaatggtaaagaaggccctgcagtgaatttgaagagtgagaagtcagaatccaatgttgatcgctctcgggaaagagaaagagatagatcaagagggcgggaccgtgatagcaggggccgggactctgatcgtgatagcaagggcagggactccgatcgggagagggagcgtgatagagaagcagacagggataggcagcggagacaccattctaaggacagaagttcaggtattgccattgatttttctgctttggctctttttataagcatgttacgttttcctgatgttgcatgatgcccctccaatgcaggatactctgacaaagagaagtcaaggcaccgctcatcaagaggtatgctagcacattagcggccctccagtggaccatatatagttttcttatctgcttcattttggctaccttttcagatcgtggtgatcactacagttcgcactcatctcgtgacaaagatcggcacaggcggcagtaatctagcagagctcgaaaacatgtaaactgatgaagtacacgttgcactatcgtggtaaaattgccattgcaactgggctccggggtgtttgttatgattgttaaactctttttttatttgcaacagaaaaagaattcttcttttgtggtgagtatcagacttcatagacttagctttgtatgacgcgtgggtctgggcatgaatcacttgttatgggagaaacttattcttgctatgcaaatctatatatcagttgattct</dnaseqindica>|
| + | Jun;135(2):1084-99. PubMed PMID: 15208425; PubMed Central PMCID: PMC514142. |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001049618.1 RefSeq:Os01g0377500]|
| + | </ref> |
| − | }}
| + | </references> |
| − | [[Category:Genes]] | + | ==Structured Information== |
| − | [[Category:Japonica mRNA]]
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 1]] | |
| − | [[Category:Chromosome 1]]
| |
