Difference between revisions of "Os01g0909200"

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(Created page with "{{JaponicaGene| GeneName = Os01g0909200| Description = DEAD/DEAH box helicase, N-terminal domain containing protein| Version = NM_001051683.1 GI:115441736 GeneID:4324864| ...")
 
(Annotated Information)
 
(19 intermediate revisions by 4 users not shown)
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{{JaponicaGene|
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The rice '''''Os01g0909200''''' was reported as '''''OsDCL''''' in 2005 <ref name="ref1" /> by researchers from the USA.  
GeneName = Os01g0909200|
 
Description = DEAD/DEAH box helicase, N-terminal domain containing protein|
 
Version = NM_001051683.1 GI:115441736 GeneID:4324864|
 
Length = 10546 bp|
 
Definition = Oryza sativa Japonica Group Os01g0909200, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:23-f1.png |right |thumb |427px |''''''Figure 1. Representatives of newly identified miRNAs from rice. A, Predicted fold-back structure of OsmiR528, OsmiR529a,OsmiR529b, and OsmiR530 precursors from rice. B, Expression patterns of novel rice miRNAs. The samples from different tissues of wild-type rice, including root, leaf, panicle, and callus, are indicated above. The tRNA bands were visualized by ethidium bromide staining of gels and served as internal loading controls.'''''']]
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Gene Symbol===
|
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*'''''Os01g0909200''''' '''''<=>''''' '''''OsDCL''''','''''DCL'''''
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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AP = Chromosome 1:41351529..41362074|
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===Function===
CDS = 41351933..41352152,41352244..41352355,41352487..41352670,41352765..41353091,41353368..41353649<br>,41353736..41354209,41354318..41354527,41354612..41354835,41355091..41355188<br>,41355267..41355757,41355837..41356108,41356854..41357110,41357260..41357478<br>,41357595..41357755,41357837..41358029,41358116..41358221,41358535..41358709<br>,41358992..41359144,41359251..41359382,41359708..41359771,41360099..41360169<br>,41360273..41360406,41360985..41361099,41361175..41361355,41361452..41361552<br>|
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*The activity of Dicer or Dicer-like (DCL) proteins is required for the maturation of miRNAs and siRNAs.
GCID = <gbrowseImage1>
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*OsDCL1 control developmental arrest at the seedling stage and pleiotropic developmental defects.
name=NC_008394:41351529..41362074
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source=RiceChromosome01
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===miRNA/siRNA===
preset=GeneLocation
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*All miRNAs tested were greatly reduced in OsDCL1IR but not OsDCL4IR transformants,indicating that OsDCL1 plays a critical role in miRNA processing in rice. In contrast, the production of siRNA from transgenic inverted repeats and endogenous CentO regions were not affected in either OsDCL1IR or OsDCL4IR transformants, suggesting that the production of miRNAs and siRNAs is via distinct OsDCLs.
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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==Labs working on this gene==
name=NC_008394:41351529..41362074
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*National Key Laboratory of Plant Genomics and Center for Plant Gene Research, Institute of Genetics and Developmental Biology;
source=RiceChromosome01
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*Chinese Academy of Sciences, Beijing 100101, China (B.L., P.L., C.L., S.C.,C.C., X.C.);
preset=GeneLocation
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*Graduate School of the Chinese Academy of Sciences, Beijing 100039, China (B.L., P.L.);
</gbrowseImage2>|
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*China Agricultural University, Beijing 100094, China (X.L.).
CDNA = <cdnaseq>atgaaccctttaaagaggtcattggaatcatcttctcaggaacatgaagcaggcaaacagaaactgcagaagagagagtgtcaagatttcactcccagaagatatcagcttgatgtctatgaggttgcaatgcggagaaacacgattgcgatgcttgacacaggagccgggaagacaatgattgctgtgatgcttatcaaggagttcggaaagataaacagaacaaagaatgctggaaaagtcatcatatttcttgcaccaacagttcaacttgttacacagcaatgcgaggtgattgaaatccacacagattttgaggtagaacaatactatggtgcaaagggggttgatcaatggacaggtcctagatggcaagagcaaatctcaaaataccaggtcatggtcatgacaccacaggtgttcctacaagctttacgcaatgctttcttaatcttggacatggttagtctcatgatatttgatgaatgccatcatgcaactggaaaccacccttatacaagaataatgaaggagttctatcacaaatcagaacataagccaagtgtgtttggtatgacagcatcacctgttataagaaaaggtatctcttctcatttggattgtgaaggtcagttctgtgaattggagaacctgttagatgctaagatctacacagtttcagatagagaagagatagagttttgtgttccttctgcaaaagaaatgtgcaggtactatgactcgaaaccagtttgttttgaagatttgagtgaagaattgggagttttatgttccaagtatgatgcattgataacagagttgcagaataagcgaagcgacatgtataaagatgctgatgatataacaaaagaatcaaagagacgcctttctaaatctatagcaaaaatttgctactgccttgatgatgttggtcttatttgtgcaagtgaggccacaaaaatctgcattgaaaggggccaggagaaaggttggctgaaggaagtagttgatgccacagatcagcaaactgatgcaaatggatcacgcctatttgcagaaaattcagcgcttcatatgaagttctttgaggaagccttgcatttaattgacaaacgcctccaacaaggtatcgacatgcttctaaactcagaaagtggatgtgttgaagcagcaaagacgggctatatttccccaaagctctatgaactcatccagatctttcactcttttagtaactctcgtcatgctcgatgcctcatttttgttgatcgaaagatcactgctagagtcattgaccggatgattaagaaaattggccaccttgcacatttcacagtttcttttcttactggagggagatcttcggtggatgctctgacacccaaaatgcagaaggatacattggattcatttcgctctggaaaggtgaacttactatttactacagatgttgctgaagagggtatccatgtcccagaatgctcttgtgtaatacgatttgatttgccaaggacaacacgtagctatgtgcagtcacgtggacgagcacgccaggaagactctcagtacattctcatgattgaacgggggaacgtgaagcaaaatgatttgatatctgcaattgtgagaagtgagacttcaatggttaagattgcttcaagcagagagtctggaaatctgtcgcctggttttgttcccaatgaagaaataaacgaataccatgtaggcacaacaggagcgaaagtaactgctgattcaagcatcagtattgtctaccgatactgtgagaagcttccgcaggataagtgctactccccaaaacctacatttgagttcactcatcatgatgatggatatgtgtgtacattagcattaccaccaagtgctgtgcttcaaattctggtgggcccaaaagcaagaaacatgcacaaagcaaaacagctcgtttgccttgatgcatgtaagaagttgcatgagctaggagcacttgatgaccacctttgtctatctgttgaagatccagttccagaaattgtaagcaaaaataagggtactggtataggtacaaccaaacggaaggagctacatggtacaacaagaattcatgcttggtctggcaattgggtgtcaaagaaaactgcactcaagcttcaaagctacaaaatgaattttgtttgtgaccaagctggtcagatttactctgaatttgttctgttaattgatgcaactttaccggatgaagtcgctactttggagattgacctatatttgcacgacaagatggtcaaaacttcagtttcttcttgtggacttcttgagttggatgctcaacagatggaacaagcaaagttgtttcaagggcttctcttcaatggtttgtttggaaagctgtttactagatcaaaagtacctaatgctccgagggaattcattcttaataaagaggatacatttgtgtggaacactgcgagtgtatatttgcttttaccaacaaatccttcttttgactccaacgtttgtattaattggagtgtcattgatgcggcagctacggcagttaaacttatgagaaggatttattctgagaataaaagagaattacttggaatatttgattctgaccaaaatgttggagatttaattcatttagctaacaagtcgtgtaaggctaacagcctcaaagatatggtagttctagcagttcacactgggaagatatatactgctcttgatattactgaattatctggcgatagcgcttttgatggtgcatctgataagaaagaatgtaaattccggacattcgcagaatatttcaaaaagaagtatggcatagtacttcgccacccctcacagccactactagttttgaagcctagtcataatcctcacaaccttctttcctcgaagttcagggatgaaggtaatgttgtggagaatatgagtaatggcacaccagttgtaaataaaacaagcaaccgtgtccacatgcctcctgagttgctgattccccttgatttacctgtggaaattttgagatcattctatttgtttccggctttgatgtatcggattgagtcattaacgttagctagtcaactaagaagtgaaattggatacagcgattctaatatatcaagtttcctgattctggaagctattacaacgcttaggtgctctgaggatttctctatggagcgtctagaattattgggagactctgtattgaagtatgcagtgagttgtcatcttttcctgaaatttcctaataaggatgaggggcagctatcatccataaggtgccatatgatttgtaatgccacactttataagcttggaattgaacgcaatgtacagggttacgtacgtgatgctgcatttgatcctcgtcgatggctagcaccaggacagctctctattcgtccatctccttgtgaatgccctgtaaaatctgaggttgtaactgacgatattcatatcattgatgacaaggctattgttctaggcaaggcgtgtgacaagggacacagatggatgtgttccaaaaccattgctgattgtgttgaggctattattggggcatattatgcagggggtggtttaagagcagccatggcagttctcaaatggttgggcatcggggctgaaattgaagaagacttgattgtgcaggccatattgagtgcttctgtgcagacttatcttccaaaagacaatgtatttgaaatgcttgaagcaaaactaggctattctttctcggtgaaaggtcttttggtagaggctctgactcacccatcacagcaggagttaggtgcaaaatactgctacgagcgcctagagttcctcggtgatgcggtcttagacattctgttaacaagatatcttttcaatagtcataaagacactaatgagggggagttgacagacttacgttctgcatcagtcaataatgaaaactttgcacaagttgcagtaaagcacaacttccatcactttctccagcattcttctgggcttctgttagaccaaattactgaatatgtgaataggttggaaggttcatccatggacaaagttgaactgttatcagatggactcccaaaagggcctaaagtccttggtgatattgtagaaagtattgcaggtgcaattcttttagacaccaaacttgatttggatgtagtctggggtatttttgaaccccttctttccccaattgtcacacctgagaatctggagttacctccatacagagagcttatcgaatggtgtggcaaacatgggtattttgtaggaattaactgtagagatcaaggagacacagtagtggctactcttgatgtacagctcaaagaggtgcttcttgtgaggcaaggttttagcaagaaaagaaaagatgcgaaagcgcatgcatcttccttactgctcaaagatctcgaggaaaaaggactaataatcccaaagaatgcaagcaagacagaacaatttgaaaagcattgtggcagcactaatcccttcaacaatttgcatgtcgatgcaatggatacacagactccaaaaccaaccaaggaaaaaaacgcagctgattcaaggaacatttctgatcccctgcttggtaaaccattgcacgtgattgtgaaaacgagtaaaggaggaccacgcattgcattatatgagttgtgtaaaaagttgcaatggccaatgcctacaatggaatctgagaaagtacaaccaagctttagcagcgtgtgctcctcccctggtggttcctctcagaaagctaccccccaagcgttcgctttcgcttcaaccattacattgcatataccaaatgctgatgtgatcagcctcacaggagatggccgtgcagataagaagagctcacaggattctgctgccctgttcttgctctatgagcttcagcggcgaggtactttgcaactccaggaggtgtga</cdnaseq>|
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<br>
AA = <aaseq>MNPLKRSLESSSQEHEAGKQKLQKRECQDFTPRRYQLDVYEVAM                    RRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPTVQLVTQQCEVIEIH                    TDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFLQALRNAFLILDMVSLMIF                    DECHHATGNHPYTRIMKEFYHKSEHKPSVFGMTASPVIRKGISSHLDCEGQFCELENL                    LDAKIYTVSDREEIEFCVPSAKEMCRYYDSKPVCFEDLSEELGVLCSKYDALITELQN                    KRSDMYKDADDITKESKRRLSKSIAKICYCLDDVGLICASEATKICIERGQEKGWLKE                    VVDATDQQTDANGSRLFAENSALHMKFFEEALHLIDKRLQQGIDMLLNSESGCVEAAK                    TGYISPKLYELIQIFHSFSNSRHARCLIFVDRKITARVIDRMIKKIGHLAHFTVSFLT                    GGRSSVDALTPKMQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVIRFDLPRTTRS                    YVQSRGRARQEDSQYILMIERGNVKQNDLISAIVRSETSMVKIASSRESGNLSPGFVP                    NEEINEYHVGTTGAKVTADSSISIVYRYCEKLPQDKCYSPKPTFEFTHHDDGYVCTLA                    LPPSAVLQILVGPKARNMHKAKQLVCLDACKKLHELGALDDHLCLSVEDPVPEIVSKN                    KGTGIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVCDQAGQIYSEFVLLI                    DATLPDEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQAKLFQGLLFNGLFGKLF                    TRSKVPNAPREFILNKEDTFVWNTASVYLLLPTNPSFDSNVCINWSVIDAAATAVKLM                    RRIYSENKRELLGIFDSDQNVGDLIHLANKSCKANSLKDMVVLAVHTGKIYTALDITE                    LSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPHNLLSSKFR                    DEGNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYRIESLTL                    ASQLRSEIGYSDSNISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAVSCHLFLKF                    PNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSIRPSPCE                    CPVKSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGGLRAA                    MAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEAL                    THPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENF                    AQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVE                    SIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCR                    DQGDTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTE                    QFEKHCGSTNPFNNLHVDAMDTQTPKPTKEKNAADSRNISDPLLGKPLHVIVKTSKGG                    PRIALYELCKKLQWPMPTMESEKVQPSFSSVCSSPGGSSQKATPQAFAFASTITLHIP                    NADVISLTGDGRADKKSSQDSAALFLLYELQRRGTLQLQEV</aaseq>|
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DNA = <dnaseqindica>9923..10142#9720..9831#9405..9588#8984..9310#8426..8707#7866..8339#7548..7757#7240..7463#6887..6984#6318..6808#5967..6238#4965..5221#4597..4815#4320..4480#4046..4238#3854..3959#3366..3540#2931..3083#2693..2824#2304..2367#1906..1976#1669..1802#976..1090#720..900#523..623#gtagtggcctctgtcgtccgtgagttaccctgacccctcctcgtcagtttgcccgccgcggcgccgccgccgccgccgccgatccccatccatcccgcgagcgagcagggcgccgtcgttcgtcctgctgcatccgccgcatcctggtgagcacctcctccgccaccgccgcctgcgtcgatccccatccatcgcgcgcgcgagcgagctgggtcgccgtcgttcgtactgctgcttccgccgcttccgttacgcacatcctctttctacccacgcactttttctcggatttgcgttaatcctagcttctgttctagaaactgacttaaccttagaaaatagtactaataacagttcaatggttcccaaaaagtttgggggtttaactgaaccccatgtcccatgttagatccgccactgcttcgaggattactaattccgttctatttgggtgtgaatattctcaatggtgaattgtcatgacctcactttgtaaatttctctgttggaatggcagtaaacatgaaccctttaaagaggtcattggaatcatcttctcaggaacatgaagcaggcaaacagaaactgcagaagagagagtgtcaagatttcactcccagaaggttctgcggagttctccttttcacagttactatattatataatcagaaaaagagtgcaatcctgtgacattgctttgtgatgctgaaattggtcagatatcagcttgatgtctatgaggttgcaatgcggagaaacacgattgcgatgcttgacacaggagccgggaagacaatgattgctgtgatgcttatcaaggagttcggaaagataaacagaacaaagaatgctggaaaagtcatcatatttcttgcaccaacagttcaacttgttacacaggttataccagtctgtagactgttcgttttatcctaactgtaatgtaatttatactaacattattttttgccacagcaatgcgaggtgattgaaatccacacagattttgaggtagaacaatactatggtgcaaagggggttgatcaatggacaggtcctagatggcaagagcaaatctcaaaataccaggcaagcatttatttgttgttgttttaaaggctcactgattcatcatatgtgctaaagaaaatactcattccatgctagcagcacttatgatctgcagtcttctgttcactatattatagagtaaatttcacgaaactacagatttttaaccaaattatcgcaaaactacagatttaaggccaagtattagagaactacagatttaatactaaagttatcacaaaacaacatattctagagtataaatctatagcactaccgttacgttagagctataaacattgtagttttgtgcttaaaattggcactaaacctgtagttttgtggtaaatttgctacttaatctttatctttgtgatactctatcttaaatctgtagttctatgagaaattccatgctaaatctgtagttttgtgatataacacctaaactctgtagttttgtgacagtttgatcgaagtatccatagttttgtgaaatttactcaacatcttttgttaagaatatcccatagatgtttttcccctgttctatctacttgttgatgctttcaacacttataataataaaattgcaggtcatggtcatgacaccacaggtgttcctacaagctttacgcaatgctttcttaatcttggacatggttagtctcatgatatttgatgaatgccatcatgcaactggaaaccacccttatacaagaataatgaaggtattgtgaaataccatcttatcatgtttttttttttttgacattagcatttaggtttttcttttttgtgtttgtcatatgttataactcatcactatctcaggagttctatcacaaatcagaacataagccaagtgtgtttggtatgacagcatcacctgttataagaaaaggcaagtattcagttatctgcaagagctatagaatgcttcttcttcttttcttttgtgtgggtgtgggtggggggaggaatgggatgttaagagacttataagtcagaaaagatcagcaataaatttcttgtaaacagtggcatttaggacatgtgttaattctgacctgccatctaagagaaatatccaggaataatgatcgtgcgcataatctccaatttcactttggccatagagttcataaatgccaatatttctggcagatttgatttattcgcatcacttagtcttattagatgatttgagttttcatggttttctttgcaggtatctcttctcatttggattgtgaaggtcagttctgtgaattggagaacctgttagatgctaaggtatgttcagtttcctgctttgccacacatattatttgaataagctgggttagattatacaggacatgttagttctgataactacactattctactttgtctattgaagtgcaaggatatatacatacctgaattccaattatttactgattgtggttttcaaccaaatgcaaattgttttactgttgtgttcgttttgagagcttaggtgatatatatttatctgttttacccatgccattttgggatacacctatgaccccttttaaaaatgtgatacggttatctgcgtactttgattctcattaatttttatctgtaacagatctacacagtttcagatagagaagagatagagttttgtgttccttctgcaaaagaaatgtgcaggtactatgactcgaaaccagtttgttttgaagatttgagtgaagaattgggagttttatgttccaaggttttatatctcttttttctcttctatattgatcaaatttgtcatcaaagtttgcagctcagcatttttaatgtttctaagaacacactcttttatgtatgtgcagtatgatgcattgataacagagttgcagaataagcgaagcgacatgtataaagatgctgatgatataacaaaagaatcaaagagacgcctttctaaatctatagcaaaaatttgctactgccttgatgatgttggtcttatttgtgcaagtgaggtatttgttatattcatttgttctagctacttatgttacaggaactgagcttaacttggtgcgaagcgcgtttgcacgcctcacaacctatttaaatccttttcagcctaattttgggttactttcttcttaaccaaaaaaatcccatctcttagtaattcttttttctctctcatactgcaacgttagctttctatgtttgaagagttcttttaccgtcactttgcttcagagttcatgtcttaatatgggtaaataataacttatcattcattctcttaggccacaaaaatctgcattgaaaggggccaggagaaaggttggctgaaggaagtagttgatgccacagatcagcaaactgatgcaaatggatcacgcctatttgcagaaaattcagcgcttcatatgaagttctttgaggaagccttgcatttaattgacaaacgcctccaacaaggtatgactatgtagataaactaataatggactggtaatgtctgtaaacttatttgcaaccttacactgttatgccatgccattagccaatggatctaagcatatatagcactgcaacaccctatatgaacttatggagtatgatgaatctgtttgataggaagtatcatgtaccatctccttgatgaattcctatcctttcatttgatgtctgtgtgtagcatgaagatggtacttcagtcttttggctctcttctcaatatgaaaatgctcagtccttctgtgtattctctaaactatttgctatcttccaggtatcgacatgcttctaaactcagaaagtggatgtgttgaagcagcaaagacgggctatatttccccaaagctctatgaactcatccagatctttcactcttttaggtattatttcttggggaaggtccacttgtttatttttttcaattgtgtgcctttaaactgacgtgacacatttctattcctaacagtaactctcgtcatgctcgatgcctcatttttgttgatcgaaagatcactgctagagtcattgaccggatgattaagaaaattggccaccttgcacatttcacagtttcttttcttactggagggagatcttcggtggatgctctgacacccaaaatgcagaaggatacattggattcatttcgctctggaaaggtaattaagatatgtcaacacttggagaaactgaagcatagttctcatgatataaccttgttttccctttctaaaatgcaggtgaacttactatttactacagatgttgctgaagagggtatccatgtcccagaatgctcttgtgtaatacgatttgatttgccaaggacaacacgtagctatgtgcagtcacgtggacgagcacgccaggaagactctcagtacattctcatgattgaacggtataaccttaatgctaccccattacaccttttattcacgtgcttttaactgaatgcagagaggaatggcaaacaagaaggatgcaaggatacataattcatttcttctaatgcagggggaacgtgaagcaaaatgatttgatatctgcaattgtgagaagtgagacttcaatggttaagattgcttcaagcagagagtctggaaatctgtcgcctggttttgttcccaatgaag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tcagtgcacgtgattgtgaaaacgagtaaaggaggaccacgcattgcattatatgagttgtgtaaaaagttgcaatggccaatgcctacaatggaatctgagaaagtacaaccaaggtactaagatttcatactagcctgtgaatgcctgtttatttacttatctatgcaacagtgcaaaataacttactaatctttcatggttcagctttagcagcgtgtgctcctcccctggtggttcctctcagaaagctaccccccaagcgttcgctttcgcttcaaccattacattgcatataccaaatgctgatgtgatcagcctcacaggagatggccgtgcagataagaagagctcacaggattctgctgccctgttcttgctctatgagcttcagcggcgaggtactttgcaactccaggaggtgtgaaggaacgacaactgattgcttgccaaccagttgcttggaagttggaataatagaccaaccagttgcttgccaccactcagctttgtacatcttctccagtgttcaccttctgaattatgataagagggtacccaaagaatggagaacagctgacctggttctggtgtgtgtcagttgttatgtgtgtttgtccatatgttatctgcgtagaaactgaataagcccccaaagttgttgctgacgataaacacgcaaatatcatgcccctgtagcctgtaggtgttaaaccaattgttcaaggataaaaagagagaccattttcaaatcatgtttccttgttctattattacataaacataccggactttttttcttataaaaactactccagtaaacatttgatc</dnaseqindica>|
+
==References==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001051683.1 RefSeq:Os01g0909200]|
+
<references>
}}
+
<ref name="ref1">
[[Category:Genes]]
+
Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V,Sundaresan V (2005) Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res 15: 78–91
[[Category:Japonica mRNA]]
+
</ref>
[[Category:Oryza Sativa Japonica Group]]
+
 
[[Category:Japonica Genes]]
+
</references>
[[Category:Japonica Chromosome 1]]
+
 
[[Category:Chromosome 1]]
+
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Latest revision as of 14:26, 11 October 2016

The rice Os01g0909200 was reported as OsDCL in 2005 [1] by researchers from the USA.

Annotated Information

'Figure 1. Representatives of newly identified miRNAs from rice. A, Predicted fold-back structure of OsmiR528, OsmiR529a,OsmiR529b, and OsmiR530 precursors from rice. B, Expression patterns of novel rice miRNAs. The samples from different tissues of wild-type rice, including root, leaf, panicle, and callus, are indicated above. The tRNA bands were visualized by ethidium bromide staining of gels and served as internal loading controls.'

Gene Symbol

  • Os01g0909200 <=> OsDCL,DCL

Function

  • The activity of Dicer or Dicer-like (DCL) proteins is required for the maturation of miRNAs and siRNAs.
  • OsDCL1 control developmental arrest at the seedling stage and pleiotropic developmental defects.

miRNA/siRNA

  • All miRNAs tested were greatly reduced in OsDCL1IR but not OsDCL4IR transformants,indicating that OsDCL1 plays a critical role in miRNA processing in rice. In contrast, the production of siRNA from transgenic inverted repeats and endogenous CentO regions were not affected in either OsDCL1IR or OsDCL4IR transformants, suggesting that the production of miRNAs and siRNAs is via distinct OsDCLs.

Labs working on this gene

  • National Key Laboratory of Plant Genomics and Center for Plant Gene Research, Institute of Genetics and Developmental Biology;
  • Chinese Academy of Sciences, Beijing 100101, China (B.L., P.L., C.L., S.C.,C.C., X.C.);
  • Graduate School of the Chinese Academy of Sciences, Beijing 100039, China (B.L., P.L.);
  • China Agricultural University, Beijing 100094, China (X.L.).


References

  1. Adai A, Johnson C, Mlotshwa S, Archer-Evans S, Manocha V, Vance V,Sundaresan V (2005) Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res 15: 78–91

Structured Information