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| − | {{JaponicaGene|
| + | The rice '''''Os12g0278800''''' was reported as '''''OsC3H65''''' in 2012 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os12g0278800|
| + | ==Annotated Information== |
| − | Description = Similar to Zinc finger CCCH type domain containing protein ZFN-like 1. Splice isoform 3|
| + | ===Gene Symbol=== |
| − | Version = NM_001073101.1 GI:115488163 GeneID:4351978|
| + | *'''''Os12g0278800''''' '''''<=>''''' '''''OsC3H65''''' |
| − | Length = 7920 bp|
| + | ===Function=== |
| − | Definition = Oryza sativa Japonica Group Os12g0278800, complete gene.|
| + | * Genes in the CCCH family encode zinc finger proteins containing the motif with three cysteines and one histidine residues. <ref name="ref1" /> <ref name="ref2" /> |
| − | Source = Oryza sativa Japonica Group
| + | * CCCH-type zinc finger proteins have essential functions in various developmental processes in plants. |
| | + | * CCCH family genes have been known to play important roles in RNA processing as RNA-binding proteins. |
| | + | * CCCH-type zinc finger proteins are RNA-binding proteins by virtue of the ability of their defining motif to directly bind to RNA, whereas most of the other zinc finger families are confirmed as DNA-binding or protein-binding proteins. |
| | + | ===Expression=== |
| | + | * The expression profile indicated that most members of this subfamily are regulated by abiotic or biotic stresses, suggesting that they could have an effective role in stress tolerance. |
| | + | ===Evolution=== |
| | + | * A typical CCCH protein usually contains 1–6 CCCH-type zinc finger motifs. |
| | + | * Based on the different numbers of amino acid spacers between cysteines and histidines in the CCCH motif, a consensus sequence for these was defined as C-X 4–15 -C-X 4–6 -C-X 3 -H (X represents any amino acid) based on the whole-genome analysis of rice and Arabidopsis CCCH proteins <ref name="ref1" /> <ref name="ref2" /> |
| | + | You can also add sub-section(s) at will. |
| | + | ==Labs working on this gene== |
| | + | * State Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural University, Taian, Shandong 271018, P.R. China |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C. Genome-wide analysis of CCCH zinc |
| | + | finger family in Arabidopsis and rice. BMC Genomics. 2008 Jan 27;9:44. doi: |
| | + | 10.1186/1471-2164-9-44. PubMed PMID: 18221561; PubMed Central PMCID: PMC2267713. |
| | + | </ref> |
| | + | * <ref name="ref2"> |
| | + | Peng X, Zhao Y, Cao J, Zhang W, Jiang H, Li X, Ma Q, Zhu S, Cheng B. CCCH-type |
| | + | zinc finger family in maize: genome-wide identification, classification and |
| | + | expression profiling under abscisic acid and drought treatments. PLoS One. |
| | + | 2012;7(7):e40120. doi: 10.1371/journal.pone.0040120. PubMed PMID: 22792223; |
| | + | PubMed Central PMCID: PMC3391233. |
| | + | </ref> |
| | + | </references> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Structured Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
| |
| − | AP = Chromosome 12:10435170..10443089|
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| − | CDS = 10435451..10435606,10435992..10436261,10436862..10437167,10437974..10438099,10439867..10439926<br>,10440485..10440529,10440759..10440818,10441569..10441631,10442228..10442308<br>,10442536..10442958|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008405:10435170..10443089
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| − | source=RiceChromosome12
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008405:10435170..10443089
| |
| − | source=RiceChromosome12
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggcggacgccgacgcgagggccccgcccaaatcggaccccggcgccacgccgatcggttcgatctccccttcctccgccgcccccgccgccggggaggacgaggtggaggtcgaggtggaggtggaggagcagctcgccggactcgccatcgccgatcagggggaggagctgctgcttcccaagcccaccggctgggaggatggccctgttgttgttgctggagatgaggtctccggtggtgagaagctgccgggtgaggtggcggcggcggtgggggtggagggtgctgcggcggattcgaggccgcggttcccgaggcgacccggggagccggactgcacctactacgtcaagttcgggagctgccgctttgggatgaagtgcaagttcaatcatccggcgaggaagaagaagagtagggtgaaaggtagtaacggtggtagtggcagcggcgggagcaacagcagcagtaacaaagcctcctcgcctgatgatgagcagcaggctccaaaagaggaatacggaagctatgttccagatatttcacctgaagttgattctttgggatttgctgacaaggggagtgcgtctaacttagaaaactttaagaaatattcttatgagattatcgatgtgaagaagggaagagtggagccaaaggaacttaaggttgccaaagagaaaaggaaggaatttatttcagaaggtagttcccaggaggaatgcaagtattattcaacacctggaggatgcaaatttggtaaagcttgtaaatacctccaccgtgatggaaaagaagggaaaacagacgctgaaaaggttgacctgaactttctcggtcttccacttcgtccaggggaaaaggagtgtccctactacatgcgtactgggagctgcaagtacgccactaactgcaagtttcaccatcctgatccttctaatgttgcttctaaagatccacagttggagcatgagaatggggatgctccacagcaagatgttcaaggatcatcgtctcagccaaatgcttcaatttggcccgatcagagaacagtgaatgagcatcatgttccgtttatagctccatctccatcgtacagtgcagggatgcttcctcctcaaggaatgtatccacctcctgaatggaatgggtatcatcaggttccgttgaatccatattatcctcctggagtccctttccaacattttccagctgctcctataaatcatcctatgtacaaggcaccagaaatacctggacatcagcaggttccttccgaggaatacccagagagacctggccaacctgaatgtcagcattttgtgaagagtggtttttgcaaatttaggatgaagtgcaaatatcaccacccaaggtcaccggtgcctccagcaggagctcttagccctcttggcttgcctataaaacctgatcagcctgtgtgcacatactatggtcgctatggggtctgcaaatttgggccagcttgcgcatacaatcaccccttcaattttagccctgtacctgcagcgggacctcctctcctccctgctcaatacccaactccaggaaactacactctctga</cdnaseq>|
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| − | AA = <aaseq>MADADARAPPKSDPGATPIGSISPSSAAPAAGEDEVEVEVEVEE QLAGLAIADQGEELLLPKPTGWEDGPVVVAGDEVSGGEKLPGEVAAAVGVEGAAADSR PRFPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARKKKSRVKGSNGGSGSGGSNSSSNK ASSPDDEQQAPKEEYGSYVPDISPEVDSLGFADKGSASNLENFKKYSYEIIDVKKGRV EPKELKVAKEKRKEFISEGSSQEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVD LNFLGLPLRPGEKECPYYMRTGSCKYATNCKFHHPDPSNVASKDPQLEHENGDAPQQD VQGSSSQPNASIWPDQRTVNEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLN PYYPPGVPFQHFPAAPINHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKF RMKCKYHHPRSPVPPAGALSPLGLPIKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSP VPAAGPPLLPAQYPTPGNYTL</aaseq>|
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| − | DNA = <dnaseqindica>7484..7639#6829..7098#5923..6228#4991..5116#3164..3223#2561..2605#2272..2331#1459..1521#782..862#132..554#ctttctctctctagggtttttccccactttcgttgcttcgcttcgcttcttcccccacctgctctcgtctccatcaccatcccttctctctcctctctctctctccagtctccacctccgaggagaggccaatggcggacgccgacgcgagggccccgcccaaatcggaccccggcgccacgccgatcggttcgatctccccttcctccgccgcccccgccgccggggaggacgaggtggaggtcgaggtggaggtggaggagcagctcgccggactcgccatcgccgatcagggggaggagctgctgcttcccaagcccaccggctgggaggatggccctgttgttgttgctggagatgaggtctccggtggtgagaagctgccgggtgaggtggcggcggcggtgggggtggagggtgctgcggcggattcgaggccgcggttcccgaggcgacccggggagccggactgcacctactacgtcaagttcgggagctgccgctttgggatgaagtgcaagttcaatcatccggcgaggaagaagaagagtagggtgggtggattggtgttggagctagttgtttaattattttgcgcgattttagggggtttttttaatttttttatgagggcgttttgatctggttttggtgatggcgagttggggtttggtggtttgcggatgggtgagacggagacgacttttgtgagtgggtttttctcatgtgtccgtgacttcgcgttgtttttgtttgtttgtctctgcatgcgtgtgtacaggtgaaaggtagtaacggtggtagtggcagcggcgggagcaacagcagcagtaacaaagcctcctcgcctgatgatgagcaggtgattagcgctttttatgcctcgtgttttacttcagctattcagcgcatgcatgtctgtcttgatttggcacgttgcttgggcttgttgtcttttctattgtattattatgttgcagcatgcaaatacactgttttttttttgtcttgaaagcgggtaaatgaaactaatatgatgaataattggagtgcacggagcttatgttgccatgttgttcatataagttgtgtgatctgaatgcaattagttttgatgctatggaggtctaataaattgctaaattttcacataaatttcagtcaccatatgtcgtgttttcgcggtggatattcatggttctaccatatccatgctgctataaactagatgtgtggcctattaaatgtttaaaagacaaacaagtgttaaacacttagcttacacggagttgatggaagtggccaataagggtggacaaaaattaaagagtggaaaacaagggaacggcaaatttggatggtggataagatattaagttaacacttgatagcaaataacgattttttttcttcagtaaaatttaattcgcctttctgttattgaatttaactttccagcaggctccaaaagaggaatacggaagctatgttccagatatttcacctgaagttgattctttggtgcgtcatctttactttattctataattgaatgtgaaggagtaacgccgaattcattgatgactaaagctagtgtctgtactgtgtccaagtgattgaaaagcagttgaaaatggtttcaaaagctgtgttgtagtacaccaccttgcacgttgacacttcggcaatatttttaatattgtacaaatctgtgtccaccatcatgaattgactagtttggatgtaactgcataggcattgcaccaaaatggttgtcctgaaaagcacggcatgccatactggcatacctaggtgtcgctaatttcggtgatgaatcaaccaccttgaactgtgaagttcagatagctattagaaaaacttggccccaaggggaaagacctcccctgaggtctttcaattaagaagaggcacccaaaactggggctgagaaaggccacaaaagcttgtcccccctacacgatgagtcgctccctatggattgggccttaacccatgctttgaggtccctaccccacacacgagggcacgccttccatttggcgattctacccatgtttttgggggaaccaacaagtgaccttttcttttgtgcgagaccaggatttgaaccctggtcagtagctttccactggaaggcattaccaccatgctacaagcacgtttgcagaattaactattagatgcacaatttatttatttttttccttttctataataattatctaatgttaatatcttattttctcgtagggatttgctgacaaggggagtgcgtctaacttagaaaactttaagaaatattcttatgaggttagcaaccagaatttcctttcagcatatcaagtaatttatttgagatgtatctattaatggttgagactcaagatacttgcctcttagtgaggtgtgattgttatggaggtgatttacattttacgccattcaacctgtgaaagcaattccaattttatacatgcattcatagctagaaattgaaagtatcacaatgtttgatgtgttctgtttttctttgttgcagattatcgatgtgaagaagggaagagtggagccaaaggaacttaaggttagctgttgctgctgtgtgattggcattatacaatatgaatgaactcttttgagttgcttgagaaatgtagtttgaattttcaaaattgtcatatcttttgttggttgattgtggaggatattgagaaattaatttgtttgatgaagttagatgaaatatattaaaatgttcgcaatttttatattattgaagcccctttggcagcaccttgatggtcagctggtcatccttttgtaaaatgtccattgtttgtgttaaatttttttatctgccttataatgttgtattatgggattttcttttttccccataccttcatatctatatatactgggtttcttgtagcaaattgcgtccttcatgcctcctgtaactgagtctgaactaacaaatttatatatttgctgtacttacatgataacaaacctcattgtcatgcaaaattctggttttatctaggatgttataaccttttggttgatctgtattttgtataaagtcttcattttattatctcctgattatactatcttctttttctgcgaggtactgaaggttgccaaagagaaaaggaaggaatttatttcagaaggtagttcccaggaggaatgcaaggtttgttagtgatctttcaccctatcgataagtctttgatcaattttgctcttaaagcataggggccatgtaatattaacagctgaaaattccttgtactggatattatgatgtacagactttcagttccttgaaaatccgtcctaaatgttctgtagattttataaatcgaaggtttaggggtaaggtgattaggcttgtctgaataacctggttgagcatgtggtttatcttattgaccactccatccgattccataattcttcttgttttggacaacgacatggtctccaaaacatatctttgattatgaattttctactataatatgtacaataaataaatatttaactttttaagactaatctatacatgttctaatgccttcaaactaaaatatttttaaagctattgatagtcaaagttctgatagtctgacctcaatcttgtcccaaacaagaagaattatggaaccagagggggtacattttagtaaagtaatgaagctgcattactctttttggttttatacttggagaaaataatttgggatcagtaaatctgttaatcttcacagcttatttgggggcattaaacaaccccatataccatgcattgtacatgtgcttgtggtctggagcagtcaaccaatggaatggatggctgaatcctgtgtctggtcactggtgtctctgatagcctaacaacctatgtgttatcaaggtgagctattcagcagagtagaatagcagcacagagcggagatcagagcaacatgagagccaaattttaaagcaaagcaaagcaaaccagctaagcagaggacggcatgtaggagatcagcatagcaaatcatgaggcagatgaagaggcagaggaagagcacaacagagtcatagcatgcaatggaggaatagtggagaagaggcggaggaagagcttacaagagtgtgagccagaggaagtagcagaagtggaagaacaactgagctggtcgcaagggtgaatgggtgattgtagaaaggcgcttgcagtggctagtgttcctctgctctgcatgtttctcaactccctaaaatttcacaattgttttctctcttctattccctgaaaccaaccattccaattccatgaaccaataaattgaaggggttcttacccttggaccaatcatggtggttctggtgcccagttcatttaggtgctaacttaactggtgggacttaggtgaagggacattttgtcttcttgttgccacctggatgccatggcgtcacttagatgatgccttgataacataggttgctacaccagaacataagttttagggcttgtttcgggagtttttgacagctgtagcttcttccagaatcaaaagctcccccaaacagtccaacttttcatttagattctgcgaagctgtagttgtagaatccagaaaatgaactataagccagattctcaccagctgcttctcagaatctaaagctcccccaaacaggcctttggtaacatgccatgaacgtacaacaaattatttatatcaactctagtgttcttttacatattctttagtaaatttcttcattgtattgctatatttctgtaagttaattttgttttgtcaccatagttgatcctagcatgctaccatagttttctgtacacactcgagcaccccattgtaatctaaggccgccaattttgtagatctttcattacaaagatattccttgtcccttgagtcttttttttaacccttttcagtattattcaacacctggaggatgcaaatttggtaaagcttgtaaatacctccaccgtgatggaaaagaagggaaaacagacgctgaaaaggttgacctgaactttctcggtcttccacttcgtccagtaagtctttcatttgtttgtcaagcttaaatactctagttgagtttatggttaccctatcaggctatctgtgggctttatttatgtatgtgtgatccatacattgtactggtgttatgggatgcctcatgcaatcacataaatcaataactaggttcaatcagggatagagcaactactgctgatctaatcatatgccagtgcactggacactgattgggatttctattgttagttgttttaaccattgctatttactaaaacaattctcgataattagagtattagacatgttctaatatctacaggataccttgtcatttttattctgtatccaccattgggtgtgactgtgatcatgtaaacctcttcagtttgggtattataagttcgtaagttgacaagtaaacctcagaaactaaagtatggtaggcttggacaattgtttggttaatggaatgaaacctactagaaagctgtcaatatatctataaatttattaattgttatgtttgcaaaaagtaagttttgtcaaattgtaaatttgatgagaaaagagtacatgctactataactctccttttactcctgtaaactgatccataggtttgcaaactaaaataattaccacaggacaaatattgtacctaagatcttttcagagttgtgctgacttggtgccaaaccagagtgattttcatgattgcacttaatttttacagcagtgtgcaataaatatgttcatgatattaatagtcatttcttaaatattccttttctatacaattgtggtgttaatcttgcagggggaaaaggagtgtccctactacatgcgtactgggagctgcaagtacgccactaactgcaagtttcaccatcctgatccttctaatgttgcttctaaagatccacagttggagcatgagaatggggatgctccacagcaagatgttcaaggatcatcgtctcagccaaatgcttcaatttggcccgatcagagaacagtgaatgagcatcatgttccgtttatagctccatctccatcgtacagtgcagggatgcttcctcctcaaggaatgtatccacctcctgaatggaatgggtatcatcaggtaaattaaagattcacctatgatgccaaaatgttctctccgctccatctcagatggacggagtaaatattgcaagttgcttttcgttgaagtgaaaattgagcatattggcatgttttgctgacttctttctgtcgactttcttataagaactaattgaaatttgtaaaattgcattagaaattggctattattactttttccaatattaactagaaatttcctggctgaaatcaaggaagatagtaccctccattcctttttacttgtaattgtggtccttaacgtatgttttttgattgttacataattaaatcatatgttgcaaaacaatattgaaaataggatgtatgaggtgcatttgaatgcttgatacaaatttgccaaatacatttccatgtcgagttacttttatgtattggaatgtgatcagattttatatgttggctgccatttctcggacaagtacataggaattatgtttctattagtccagttctccagtttatccttcaaatgtcttcttcgagaaagcacctttctttacaattgatacattatcttgggtaacaatttcacgtgtaactatttccttttcaggttccgttgaatccatattatcctcctggagtccctttccaacattttccagctgctcctataaatcatcctatgtacaaggcaccagaaatacctggacatcagcaggttccttccgaggaatacccagagagacctggccaacctgaatgtcagcattttgtgaagagtggtttttgcaaatttaggatgaagtgcaaatatcaccacccaaggtcaccggtgcctccagcaggagctcttagccctcttggcttgcctataaaacctgtatgttccttcttccatttatttcctcaattttaggtgatatcattcatttagctctgttgggactgtttgttacagcttcaaccccaggtttggtatctctagttcaaaaaattcttaagttgggaggtggggttagattaagattattatagctaagacattttgtacatattttagactaaaagaatagagttaactcactttagtttaagctataaactctattcctgatggttgcagctgttgttaactgacaactctatgctaataacttatgatttatttttgtttacctcttctgaccccatcatttgcaatctaaatcagataatgcttgatcgctatttttttaatgttttatttcttgccatatttgtttcaggatcagcctgtgtgcacatactatggtcgctatggggtctgcaaatttgggccagcttgcgcatacaatcaccccttcaattttagccctgtacctgcagcgggacctcctctcctccctgctcaatacccaactccaggaaactacactctctgaagcaggcacgagcgatttttcatcgtcgccgtgatgcttgtaataacttcacttgtaagatagcgtagctgaaagctgtacgtgggttcactcactgacagtgggagagatctggcttggaaagtggcaacgaagttgcatcaagctgggtacattgccgctggaattcatgaaattaaacaaaacctgtcaaaactctttacattgtacagcatcgtcgcgtttagtatacaactatggcgtcgggctgaatcccatattgcagttttacatcttccatg</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073101.1 RefSeq:Os12g0278800]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 12]]
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| − | [[Category:Chromosome 12]]
| |
