Difference between revisions of "Main Page"

Latest revision as of 02:37, 25 November 2025

Welcome to RiceWiki

86,216 rice genes inside

Contribute your efforts, further our knowledge.

[# Genome Browser]
Databases

Introduction

RiceWiki, a project of IC4R (Information Commmons for Rice) as well as a component of ScienceWikis, is a wiki-based, publicly editable and open-content platform for community curation of genes and Omics Knowledge in rice, viz., a community-curated resource of rice knowledge. Unlike conventional biological databases based on expert curation, RiceWiki harnesses collective intelligence to collect, edit and annotate information about rice, quantifies users' contributions in each annotated gene and provides explicit authorship for each contributor to encourage more participation from the whole scientific community. Welcome to join us !

Nothing great is ever accomplished in isolation. – Yo-Yo Ma

More than 1000 manually curated genes are validated as high quality in RiceWiki.
Gene Expression Profiles retrieved from the IC4R-RED are integrated in RiceWiki.
Quantified contributions of all curators are calculated by: AuthorReward
[# 35,717 Scientific Articles] associated with rice are provided for curators.
Here, is a List of genes to be curated for the next season. If you are interested, just contact us.

      |*******Recently Curated Genes*******|
     Os06g0683400, Os03g0125100, Os01g0192000     
     Os01g0848400, Os06g0107700, Os10g0563600 
     Os01g0919400, Os03g0180800, Os12g0583700
     Os09g0306400, Os10g0553300, Os09g0286400

Omics Knowledge Portal for Rice (OKP4R)

OKP4R: a multidisciplinary portal to share omics knowledge for rice. (More...)

Rice Story

As an important food

Rice is the seed of the monocot plants Oryza sativa (Asian rice) or Oryza glaberrima (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 (Full article...).

As a biological model

Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, indica and japonica, were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.

Featured Research

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@@ Line 1: / Line 1: @@
-__NOTITLE__
 __NOTOC__
 __NOEDITSECTION__
-[[Image:6.jpg|margin: 0px]]
+<!-----------------title--------------------->
-{|style="width:100%;margin-top:none;background-color:#EAF4F4;border:2px solid #079400;margin-bottom: 3px;"
+{|style="width:100%; margin-top:10px; background-color:#f6f6f6; border:1px solid #d2d2d2; margin-bottom: 10px;"
-|style="width:65%;color:#000"|
+|style="width:50%; text-align:center; white-space:nowrap; color:#000"|
-{|style="width:170px;background:#EAF4F4"
+<div style="font-size:180%; border:none; margin:0; padding:.5em; color:#000;">Welcome to RiceWiki</div>
-|-
+<div style="padding:0em; font-size:100%">[[:Category:Genes |86,216]] rice genes inside</div>
-|style="width:100%;white-space:nowrap;color:#000" |
+<div style="padding:0em; font-size:100%; color:#492;">'''Contribute your efforts, further our knowledge.'''</div>
-<div style="font-size:160%;text-align:left;border:none;margin: 0;padding:.1em;">'''RiceWiki, currently covering [[:Category:Genes |66,269]] Rice Genes,'''  </div>
-<div style="font-size:110%;top:+0.2em;">'''is aimed at providing a collaborative platform for science community to <br> collect, revise and make full use of Rice Genome Annotation Information.'''</div>
+|style="width:18%;|
+*<span class=plainlinks>[[Special:CuratedGenes|'''Genes''']]</span>
+*[[RiceWiki:Omics Knowledge Portal for Rice|'''Omics Knowledge''']]
+|style="width:18%;|
+*[[Special:BLAST|'''BLAST''']]
+*[[RiceWiki:Templates|'''Templates''']]
+|style="width:18%;|
+*[# '''Genome Browser''']
+*[http://ngdc.cncb.ac.cn/databasecommons/search?term=Oryza%20sativa '''Databases''']
 |}
-|style="width:18%;font-size:95%;color:#EAF4F4" valign="top"|
-*[[Gene Lists]]
+<!---------------welcome Box----------------->
-*[[Chromosome Information |Chromosome]]
+{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
-*<span class=plainlinks>[[:Category:Genes | All the Genes]]</span>
+|valign="top" style="border:1px solid #c6c6c6; background-color:transparent; width:100%;"|
-|style="width:18%;font-size:95%" valign="top"|
+<div style="background:#f1f1f1; border-bottom:1px solid #c6c6c6; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Introduction</div>
-*<span class=plainlinks>[[Important Papers]]</span>
+<div style="padding:0.5em 0.5em;">{{:RiceWiki:Summary}}</div>
-*<span class=plainlinks>[[Special:ScienceReward| Contribution]]</span>
+<div style="padding:0.2em 0.5em;text-align:center">''Nothing great is ever accomplished in isolation. – Yo-Yo Ma''</div>
-*[[Genome Browser]]
+----
-|style="width:18%;font-size:95%" valign="top"|
+<div style="padding:0.5em 0.5em;">
-*<span class=plainlinks>[[Tools]]</span>
+{|
-*<span class=plainlinks>[[test]]</span>
+|style="width:70%; white-space:nowrap; color:#000"|
-*[[TemplateGeneContentOrganaziton | Template]]
+*More than [[Special:CuratedGenes|'''1000 manually curated genes''']] are validated as high quality in RiceWiki.
-|}
+*Gene Expression Profiles retrieved from the [https://ngdc.cncb.ac.cn/red '''''IC4R-RED'''''] are integrated in RiceWiki.
-<!-----------------------------------------------------------------正文-------------------------------------------------------------->
+*[[Special:AuthorReward |'''Quantified contributions''']] of all curators are calculated by: [http://www.ncbi.nlm.nih.gov/pubmed/23732274 ''AuthorReward'']
-{|border="0" cellspacing="0" cellpadding="0" style="width:100%;clear:both; background:none; color:black;margin-bottom: 3px;"
+*[# '''35,717 Scientific Articles'''] associated with rice are provided for curators.
-<!-----------------------------------上左--------------------------------------->
+*Here, is a [[RiceWiki:TBC|'''List of genes ''']]to be curated for the next season. If you are interested, just [[RiceWiki:Joining|'''contact us''']].
-|width="25%" style="border:2px solid #BC7A38;background-color:#EAF4F4;padding:0px 0px"  valign="top"|
+|
-<div style="background:#DAA168; border-bottom:2px solid #BC7A38;  font-size:150%; text-align:center;font-weight:bold;padding:0.2em 0.5em">'''Rice Genome Overview'''</div>
+ '''      |*******Recently Curated Genes*******|'''<br>'''     [[Os06g0683400]]''', '''[[Os03g0125100]]''', '''[[Os01g0192000]]'''     <br>'''     [[Os01g0848400]]''', '''[[Os06g0107700]]''', '''[[Os10g0563600]]''' <br>'''     [[Os01g0919400]]''', '''[[Os03g0180800]]''', '''[[Os12g0583700]]'''<br>'''     [[Os09g0306400]]''', '''[[Os10g0553300]]''', '''[[Os09g0286400]]'''
-<div style="padding:1px 1px;"></div>
-[[image:RiceG.jpg]]<br>
-[[Chromosome Information |See Detailed]]
-==[[:Category:Japonica Genes |'''Oryza sativa Japonica Group''']]==
-{|style="border-spacing:0px;margin:0px 0px"
-|style="width:60%;vertical-align:top;color:#000"|
-*[[:category:Japonica Chromosome 1|'''Chromosome 1''']]
-*[[:category:Japonica Chromosome 2|'''Chromosome 2''']]
-*[[:category:Japonica Chromosome 3|'''Chromosome 3''']]
-*[[:category:Japonica Chromosome 4|'''Chromosome 4''']]
-*[[:category:Japonica Chromosome 5|'''Chromosome 5''']]
-*[[:category:Japonica Chromosome 6|'''Chromosome 6''']]
 |
-*[[:category:Japonica Chromosome 7|'''Chromosome 7''']]
-*[[:category:Japonica Chromosome 8|'''Chromosome 8''']]
-*[[:category:Japonica Chromosome 9|'''Chromosome 9''']]
-*[[:category:Japonica Chromosome 10|'''Chromosome 10''']]
-*[[:category:Japonica Chromosome 11|'''Chromosome 11''']]
-*[[:category:Japonica Chromosome 12|'''Chromosome 12''']]
 |}
+</div>
-==[[:Category:Indica Genes | '''Oryza sativa Indica Group''']]==
-{|style="border-spacing:0px;margin:0px 0px"
-|style="width:60%;vertical-align:top;color:#000"|
-*[[:category:Indica Chromosome 1|'''Chromosome 1''']]
-*[[:category:Indica Chromosome 2|'''Chromosome 2''']]
-*[[:category:Indica Chromosome 3|'''Chromosome 3''']]
-*[[:category:Indica Chromosome 4|'''Chromosome 4''']]
-*[[:category:Indica Chromosome 5|'''Chromosome 5''']]
-*[[:category:Indica Chromosome 6|'''Chromosome 6''']]
-|
-*[[:category:Indica Chromosome 7|'''Chromosome 7''']]
-*[[:category:Indica Chromosome 8|'''Chromosome 8''']]
-*[[:category:Indica Chromosome 9|'''Chromosome 9''']]
-*[[:category:Indica Chromosome 10|'''Chromosome 10''']]
-*[[:category:Indica Chromosome 11|'''Chromosome 11''']]
-*[[:category:Indica Chromosome 12|'''Chromosome 12''']]
 |}
-<!--------------------------------------------------上右-------------------------------------------------------------------------------------->
+<!--------------main part one---------------->
+{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
+|-
+<!-----------Rice Genome Overview------------>
+|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:40%"|
+<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:120%; font-weight:bold;">Omics Knowledge Portal for Rice (OKP4R)</div>
+<div style="width:515px;padding:0.5em 0.5em;font-size:100%;">
+* '''OKP4R''': a multidisciplinary portal to share omics knowledge for rice. [[RiceWiki:Omics_Knowledge_Portal_for_Rice|'''(More...)''']]<br>
+[[File:IC4R_Omics_Pic_Jian.png|right|505px|'''Figure 1. Omics Knowledge Portal for Rice'''|link=RiceWiki:Omics_Knowledge_Portal_for_Rice]]
+</div>
+<!-----------------Rice---------------------->
 |style="padding:0px 2px;"|
-| style="border:2px solid #F2394A;background-color:#EAF4F4;padding:0px 0px" valign="top"|
+|valign="top" style="border:1px solid #93ff93; background-color:transparent;"|
-<div style="background:#F2394A; border-bottom:2px solid #C70000;  font-size:150%;;font-weight:bold; text-align:center;font-weight:bold;padding:0.2em 0.4em">'''Rice's Story '''</div>
+<div style="background:#deffde; border-bottom:1px solid #93ff93; padding:0.2em 0.5em; font-size:120%; font-weight:bold;">Rice Story</div>
-<div style="padding:0.2em 0.5em;"></div>
+<div style="padding:0.5em 0.5em;font-size:100%;">
-[[File:Damifan.jpg<!--就是这个，小图片哦！！！！！！.-->|right|120px|margin: 5px|]]
+*As an important food
-*'''As an important food:'''<br>'''Rice is the seed of the monocot plants Oryza sativa (Asian rice) or Oryza glaberrima (African rice).As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2009.'''<br>
+:Rice is the seed of the monocot plants ''Oryza sativa'' (Asian rice) or ''Oryza glaberrima'' (African rice). As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies. It is the grain with the third-highest worldwide production, after maize (corn) and wheat, according to data for 2010 [http://en.wikipedia.org/wiki/Rice (Full article...)].<br>
-*'''As a biological model:'''<br>'''Rice is not only an important food for human to eat, but also a model organism for the biological study of the grass family of crops and other plants. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution, which will be extended to cereal crops, monocots and even plants in general.'''[http://en.wikipedia.org/wiki/Rice  (More)]
+*As a biological model
-== ==
+:Rice is also a model organism for the biological study of the grass family of crops and other plants. The two most common rice cultivars, ''indica'' and ''japonica'', were completely sequenced in 2002. The genome sequences of domesticated rice provide a solid foundation for integrating biological information, including genetics, gene expression, development, physiology and evolution.</div>
-{|style="border:none;background-color:transparent;width:100%"
-!|Recent Modified Genes!!Highly Accessed Genes!!Most Contributed Genes
-|- style="background:transcript; color:black" align="center"
-|{{RecentActivity:type=edits|count = 15}}
-|{{RecentActivity:type=visits|count = 15}}
-|{{RecentActivity:type=contributes|count = 15}}
 |}
+<!---------------Omics Knowledge Portal for Rice----------------->
+{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
+|-
+<!-----------English------------>
+|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:40%"|
+<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Featured Research</div>
+{|style="border:none; background-color:transparent; width:100%;"
+|-style="background:transcript; color:black;"  valign="top"
+<center>
+<html>
+<div style="width: 527px; height: 300px; padding-bottom: 30px;text-align:center">
+<script src="http://cdn.tagul.com/embed/tc86pr9cqqh1"></script>
+<!-- Please don't remove attribution to Tagul.com -->
+<a href="http://tagul.com/">Created with Tagul.com</a>
+</div>
+</html>
+</center>
 |}
-<!-----------------------------------下边栏------------------------------->
-{|border="0" cellspacing="0" cellpadding="0" style="width:100%;clear:both; background:none; color:black;"
-<!--------------------------------------------------下左------------------------------------------->
-|width="38%" style="border:2px solid #A676FF;background-color:#EAF4F4;"   valign="top"|
-<div style="background:#C79AF2; border-bottom:2px solid #A676FF;  font-size:150%;;font-weight:bold; text-align:center;font-weight:bold;padding:0.2em 0.4em">'''Welcome to join RiceWiki</div>
-<div style="padding:0.2em 0.5em;"></div>
-[[File:Woshou.png<!--就是这个，小图片哦！！！！！！.-->|right|50px|This star symbolizes the featured content on Wikipedia.]]
-=='''Let's make it together !'''==
+<!-----------------Chinese---------------------->
-'''ScienceWiki is currently set up so anyone can view or search, but only registered users can edit or add pages. Currently registered users can create new users, and we are working to add at least one registered user for each participating database.'''
-<!--------------------------------------------------下中------------------------------------------->
 |style="padding:0px 2px;"|
-|width="38%" style="border:2px solid #079400;background-color:#EAF4F4;"   valign="top"|
+|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;"|
-<div style="background:#33E089; border-bottom:2px solid #079400;  font-size:150%;;font-weight:bold; text-align:center;font-weight:bold;padding:0.2em 0.4em">Our Lab Information'''</div>
+<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;"> Latest News </div>
-<div style="padding:0.2em 0.5em;"></div>
+<div style="padding:0.5em 0.5em;font-size:100%;">
-[[File:Cscr-featured.png<!--就是这个，小图片哦！！！！！！.-->|right|50px|This star symbolizes the featured content on Wikipedia.]]
+* '''Sep 04th, 2017''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/bdf2017 The 2017 Big Data Forum for Life and Health Sciences] will be held in Beijing China from October 13th to 17th.
-==[http://cbb.big.ac.cn/ '''CBB''']==
+* '''Jun 07th, 2017''': The Upcoming Conference Note: [http://www.ibc2017.cn/ The XIX International Botanical Congress in 2017] will be held in Shenzhen China from July 10th to 13th.
-'''Our group works in the field of Computational Biology and Bioinformatics, applying computer science, mathematics and statistics to practical problems arising from the management and analysis of large-scale biological data. You can visit http://cbb.big.ac.cn/ for more information.'''
+* '''May 20th, 2017''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/dpd The Workshop on DNA Methylation and Precision Medicine] will be held in Beijing China from June 08th to 10th.
-<!--------------------------------------------------下右------------------------------------------->
+* '''Nov 05th, 2016''': The Upcoming Conference Note: [http://bigd.big.ac.cn/conference/bdf The 2016 Big Data Forum for Life and Health Sciences] will be held in Beijing China from December 05th to 08th.
+* '''Jun 22th, 2016''': [[Omics Knowledge Portal for Rice| The Omics Knowledge Portal for Rice]] was launched at RiceWiki.
+</div>
+|}
+<!--------------main part two---------------->
+{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
+|-
+<!-------------Lab Information-------------->
+|valign="top" style="border:1px solid #66B3FF; background-color:transparent; width:65%"|
+<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Publications</div>
+<div style="padding:0.5em 1em;font-size:100%">
+'''Primary publication:'''<br>
+*'''RiceWiki: a wiki-based database for community curation of rice genes.''' ''Nucleic Acids Research'' (2014), 42(Database issue):D1222-1228. [http://www.ncbi.nlm.nih.gov/pubmed/24136999 PMID=24136999]
+'''Related publications:'''
+*'''Information Commons for Rice (IC4R).''' ''Nucleic Acids Research'' (2016), 44(D1):D1172-1180. [http://www.ncbi.nlm.nih.gov/pubmed/26519466 PMID=26519466]
+*'''Bringing biocuration to China.''' ''Genomics Proteomics Bioinformatics'' (2014), 12(4):153-155.[http://www.ncbi.nlm.nih.gov/pubmed/25042682 PMID=25042682]
+*'''AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.''' ''Bioinformatics'' (2013), 29(14):1837-1839.[http://www.ncbi.nlm.nih.gov/pubmed/23732274 PMID=23732274]]
+</div>
+<!------------Visitor Statistics------------->
 |style="padding:0px 2px;"|
-|style="border:2px solid #5975FF;background-color:#EAF4F4;"   valign="top"|
+|valign="top" style="border:1px solid #66B3FF; background-color:transparent;"|
-<div style="background-color:#63B1FF; border-bottom:2px solid #5975FF;  font-size:150%;;font-weight:bold; text-align:center;font-weight:bold;padding:0.2em 0.4em">Vistor Statistics</div>
+<div style="background:#ACD6FF; border-bottom:1px solid #66B3FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">Visitor Statistics</div>
-<div style="padding:0.2em 0.5em;"></div>
+<div style="padding:0.5em 1em;text-align:center">
-[[File:earth.png|right|50px|This star symbolizes the featured content on Wikipedia.]]
-=='''Global'''==
 <htmlet nocache="yes">earth</htmlet>
+</div>
 |}

Difference between revisions of "Main Page"

Latest revision as of 02:37, 25 November 2025

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