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| − | {{JaponicaGene|
| + | The rice '''''Os08g0345800''''' was reported as '''''OsAPS2''''' in 2005 <ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os08g0345800|
| |
| − | Description = Similar to Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE B) (Alpha-D-glucose-1-phosphate adenyl transferase)|
| |
| − | Version = NM_001068138.1 GI:115476013 GeneID:4345339|
| |
| − | Length = 6195 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os08g0345800, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:Os09g0298200.png|right|thumb|427px|'''Figure 3.''' ''Expression of rice AGPases in leaves, stems and roots during light/dark periods.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os08g0345800''''' '''''<=>''''' '''''OsAPS2''''','''''APS2''''' |
| − | |
| + | |
| − | Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
| + | ===Function=== |
| − | AP = Chromosome 8:15754394..15760588|
| + | * '''''OsAPS1''''' encodes a small subunit of ADP-glucose pyrophosphorylase (AGPase). |
| − | CDS = 15754847..15754963,15755623..15755742,15755828..15755926,15756049..15756160,15756272..15756375<br>,15756563..15756742,15756859..15757128,15757776..15758072,15760341..15760481<br>|
| + | * AGPase catalyzes the conversion of glucose (Glc)-1-phosphate and ATP to ADP-glucose and pyrophosphate. |
| − | GCID = <gbrowseImage1>
| + | ===Mutation=== |
| − | name=NC_008401:15754394..15760588
| + | [[File:.png|right|thumb|400px|'''''' '' <ref name="ref1" />.'']] |
| − | source=RiceChromosome08
| + | |
| − | preset=GeneLocation
| + | ===Expression === |
| − | </gbrowseImage1>|
| + | * '''''OsAPS2''''' was constitutively expressed and these isoforms were coordinated with starch accumulation in the developing rice seed. |
| − | GSID = <gbrowseImage2>
| + | * In order to clarify the effect of sugars and plant hormones on AGPase gene expression more precisely, a rice cell culture system was used. |
| − | name=NC_008401:15754394..15760588
| + | * '''''OsAPL3''''' transcript significantly accumulated in response to increased levels of sucrose and abscisic acid (ABA) concentration in the medium; however, the transcripts of other AGPase genes did not show significant accumulation. |
| − | source=RiceChromosome08
| + | ===Subcellular localization=== |
| − | preset=GeneLocation
| + | * Based on the alignment analysis (Fig. 1) and subcellular localizations as predicted by programs (PSORT, ChloP, TargetP and iPSORT), '''''OsAPS2''''', '''''OsAPL2''''' and '''''OsAPL3''''' are extra-plastidial forms and '''''OsAPS1''''', '''''OsAPL1''''' and '''''OsAPL2''''' are plastidial forms of AGPase. |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>atgaatgtattggcatctaagatcttcccttcccgctccaatgttgccagcgagcaacaacaatcgaagcgcgagaaagcaactattgatgacgctaagaactcgtccaagaacaaaaatcttgaccgcagtgtcgatgagagtgtgcttggaatcattcttggaggtggtgcagggactagattgtatcccctcaccaagaagcgtgccaagcctgccgtgcctctgggtgccaactacaggcttattgatatccctgtcagcaactgtttgaacagcaacatatccaagatctatgtgctgacacaattcaactctgcctctctgaaccgtcacctgtcaagagcctatgggaacaacattggcgggtacaagaatgaagggttcgttgaagtcctcgctgcacagcagagcccagataatcctaactggtttcagggtactgcagatgctgtaagacagtacttatggctatttgaggagcataatgttatggagtttctaattctggctggagatcacctttaccgcatggactatgaaaagttcattcaggcacacagagaaacagattctgatattactgttgctgccctgccaatggatgagaaacgtgcaactgcattcggcctcatgaaaattgacgaggaagggagaatagttgaatttgcagagaaaccaaaaggagaacaattgaaagcaatgatggttgacactaccatacttggccttgacgacgtgagggcaaaagaaatgccttatattgctagcatgggtatctatgtgattagtaaaaatgtaatgcttcagctcctccgtgaacaatttcctggagctaatgactttggaagtgaagtcattccaggtgcaacaaacatcggaatgagggtacaagcttacttgtatgatggttactgggaagacattggtaccattgaggcattctataatgcaaatctgggaataacgaaaaagcctgtaccagatttcagtttctatgaccggtctgctccaatttatacacaacctcgacacttgcctccttcgaaggttcttgatgctgatgtgacagacagtgtcattggtgaaggttgtgttattaaaaactgtaagatacaccattcagtagttggactccggtcctgcatttctgaaggcgcaataatagaggactcattactcatgggagctgactactacgagactgaagcagacaagaaactccttggtgaaaaaggtggcattcccattggtattgggaagaattgccacattagaagggcaatcatcgacaagaatgctcgtattggagataatgtgaagataatcaatgttgacaatgtccaagaagctgcaagagagactgatggatactttatcaaaagtggcattgttaccgtgatcaaggatgctttgctccctagcggaacagttatatga</cdnaseq>|
| + | You can also add sub-section(s) at will. |
| − | AA = <aaseq>MNVLASKIFPSRSNVASEQQQSKREKATIDDAKNSSKNKNLDRS VDESVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLT QFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPDNPNWFQGTADAVRQYLWLFE EHNVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEG RIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQF PGANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYD RSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDS LLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNARIGDNVKIINVDNVQE AARETDGYFIKSGIVTVIKDALLPSGTVI</aaseq>|
| + | |
| − | DNA = <dnaseqindica>5626..5742#4847..4966#4663..4761#4429..4540#4214..4317#3847..4026#3461..3730#2517..2813#108..248#gtgcatttctacaatcttttgttgcccattcatctgggttttcttctgcttctttttttttcctagagagtacggttttctttgtaattctttaatttgttgcaaccatgaatgtattggcatctaagatcttcccttcccgctccaatgttgccagcgagcaacaacaatcgaagcgcgagaaagcaactattgatgacgctaagaactcgtccaagaacaaaaatcttgaccgcagtgtcgatgaggtaaccgatcttccccacaaaacatattcataaataccattacttgattttttttatggaattccttattcatgtagaacatattttctatttgatgaattctccatgcatgatgtttcaatcttcttttttttattgtgtggagtatataaaagtaattagaatttgtagcacctggacatatgcagcaaattattcatctactactatagttcggatttatttttatcgatgcaaattggatttggatagaaatgtacattcttttattttagtcagaataaaagtttcttctatctagaatatactataataacatatctatctaaaacaaatatggtacaacacacttgcaactagcagcaagttccctgaaagatgtttgtctaatgctatggtgatctctttcactacagtttggtgtatgtgtgtccatagtagaatatgagtcctgcaaaagcaaacatcatcatgccaacaaaaatggcccatgtgccatcaataattcaaggtgcccgttgatgagtaacagaacatttgattgtgtcaccctaccacaaacacacatggaaggccattgcattccctataaggacatcatggtcattccaaaatgtactgacacctgctcaatgcagacaaaaaccccttcaaaaaacagaagaatctccctcttaaaaaaactgattaaatgattatttctgaaataaaaatgttgagtttttatttttaaatagtttatatcattctattcttttagaaacgtagtacaaacatagatacttacagcgtgcgcatactcatctatataaatgcacacctctgaaaaactaaagagaagtggaaaaaatggcaagatttactaataattagattatagtttttcacatctaataggaaaattatagattaaataattttttgaaagaaaaaaatatttgaaaacttatttattttcaagtatttgaaattatttaaataaagagtaaattttagaaaactacaactacagtgaaaaaactatcagtttgctataacttttacgtgatatgttgctacagttgtcacctacatgtcctgtagcagtatatcacatcaaagttgtagttttgtgataatttttcatgctattggtgcaaaaaactgaaatagatcattaatattacagcaaactgatagttctatcactgtagttatagttttctgaaatttaagatctaaaagaagaaaaaaagggggggggggggggtgagatttacacacagccacacgacacgaggcagggctaccccactagacaatctgtccactcaccactggcctcacttccttgatctcttctcgtcttctccaccccgcacgcggccacccccgcagggaccccgtgacccgcgcccgcgcccgcgcctcaccgcaatggcgatggcggcagccatgggcgtggcctccccctaccacgccgcccacgccgccgcatccacatcgtgcgactcgctccgcctcctcgtcgcggaaggccggccgcggcggccgcgaggggtggcctcctcctcctcctcctcctcttcggcggggaggcggaggcggccgctcgtcttctccccgcgcgcggtgtccgactccaagagctcgcagacctgcctcgacccggacgccagcacggtacgcgcgccatcgcgaccacgccaccgagggcgatgggataatttaatggcggccgcttctctgcacacctcgctgcttctctgatccgtcgtgtggttgcgttgttttggtggggaatctgactcgcgcggagatggattttttatcttctttttctttttaatagtttagatgcgcaaatgcggttggcgtcttgtccttccattttggacgttttcgtggttccttaattgtttatttccaataaatgtggcaatcgtaggattgttagtggttgaggagtaagattttgtgggtgggagaacataagaaattggtaacaacttgtcatgctctatggtttttgggctcttaaactgttgcgcaatcagatcaggtggtagctggaccattatatatcattcaaaacaattctcttcccaaatgtttttaatcattgaggtttgacatagaattttcagtagtacatacaccatgaccattgctttctaaggatctctaaattcaaattgcacaataatcttttttaagacaagattttgccccactcatcgtttttgttggataattatctctactgatgctcttcttttgttggtgcagagtgtgcttggaatcattcttggaggtggtgcagggactagattgtatcccctcaccaagaagcgtgccaagcctgccgtgcctctgggtgccaactacaggcttattgatatccctgtcagcaactgtttgaacagcaacatatccaagatctatgtgctgacacaattcaactctgcctctctgaaccgtcacctgtcaagagcctatgggaacaacattggcgggtacaagaatgaagggttcgttgaagtcctcgctgcacagcagagcccagataatcctaactggtttcaggtatcatactcaatatcaaagtgttttgtttgatgtcaaatgtacatctacctttgggcattgcatatttcttttccactccaaagcattctctataataataaaattcatccttatcattaagtctgatgtcttcgattctaacagtttacattttttaacattgcaaattatttcattgggaattttcttgactcctgctagcatcttaaagacgattctaaactcaactaggcatttgaaaactgtgaataaatttgttccaatgagtgcttttgcatttgtcttccaagtccagtcatgaacaagtttagttactatttgtcaattagtataggaaaatgattagtgtggtatgcatactcagaattgccagtataattgtttctcagtaaaggaaaaaacaaatcatgattcatgagttgtaatttagtatgcatcagaatttcttctttagattttgaacgctagagcatacatgcacataatttctgctagtacgtaccaatccaggcatattattacattctaatttgtaatgcacaggcaacacttgtcgtttcagttagttactgaagatggctgtgtttgtaggatcccaatctatcttatacaagtactgattttgttttatattctgacctcagggtactgcagatgctgtaagacagtacttatggctatttgaggagcataatgttatggagtttctaattctggctggagatcacctttaccgcatggactatgaaaagttcattcaggcacacagagaaacagattctgatattactgttgctgccctgccaatggatgagaaacgtgcaactgcattcggcctcatgaaaattgacgaggaagggagaatagttgaatttgcagagaaaccaaaaggagaacaattgaaagcaatgatggtatgcaaatgacgtgcctttcttgctaacttgtgatatacagttgtgagatatcagttattacaccacatacttccatatcaaaactcattttgttgcctattttcgtcttgtaggttgacactaccatacttggccttgacgacgtgagggcaaaagaaatgccttatattgctagcatgggtatctatgtgattagtaaaaatgtaatgcttcagctcctccgtgaacaatttcctggagctaatgactttggaagtgaagtcattccaggtgcaacaaacatcggaatgagggtatggaaagctcgctgtttagtagccttttgttttcttcagtttattactgctgcttttatgattgttagcatttgaccttctctcactgaaatattgtcatggcatatgtaataaattacttttttattacttgtaggtcatgtgctatatttgctgcttaagaatctatttttgttgtctgcaggtacaagcttacttgtatgatggttactgggaagacattggtaccattgaggcattctataatgcaaatctgggaataacgaaaaagcctgtaccagatttcaggtatgctttcaatttttacaccttgctgtggctgaagattatggaatttgaagcatgtgaatttataattgtctccttatgatataaaatataccatcaaaatatctgcagtttctatgaccggtctgctccaatttatacacaacctcgacacttgcctccttcgaaggttcttgatgctgatgtgacagacagtgtcattggtgaaggttgtgttattaaagtaagtatgttgtgtttgtatgttataattcaaaacctcctgtagtttctatggtctatctttttttacatttccttcaaagtaatttatcatgctgcaactttcacttttcgtccttgtagaactgtaagatacaccattcagtagttggactccggtcctgcatttctgaaggcgcaataatagaggactcattactcatgggagctgactactacgaggtaaaataagtgcatgtataatatgcctctgtcagagaaaataagagaatttatccctttctttttcctttttctggttcaccagactgaagcagacaagaaactccttggtgaaaaaggtggcattcccattggtattgggaagaattgccacattagaagggcaatcatcgacaagaatgctcgtattggagataatgtgaaggtattccaaattgattttcttatcgttaagcatttaatatgtttatatgttcttactttttttaatgaattttactattcggtctttctcatctcttctcctttaagtttctggttcgattttactagaagttagttagttcttactaataaatggacttgcaatgatcttttatcattttgcatgcaagatggcttatataatataattttgctataacgatatctttgagtggataaatattttccccattgttcttggaatgaattaatctaactataattcctagcataaaagagaattcaggtattgatatatcactttattgcaaacaaaaaactaaacactgaaagcatagaacaggacatctatgtgtgcttcgcggtgctgctaaaaaccctgcgcataaccatttatgtttcattacggatactgttttccagatcctgttgttttcttacagctggacctgcttctgcttgtgcatgaacttctcaagacttgaacaattttatcatctaaagcccgcaccttgtaattataaatatgctttgtaggaaaaataattgcattgcaaaatcttgcatctctatgttcttctaaacgtaaaactgctttctgcgtaactgtatgtaacaacaattgactcatggatgcagataatcaatgttgacaatgtccaagaagctgcaagagagactgatggatactttatcaaaagtggcattgttaccgtgatcaaggatgctttgctccctagcggaacagttatatgaagtaagttatccatccctctacgaacaccactgtggctgcaggcctgcagttcataaacctctgttcatttttaataaaaaaattatgcaacatttctaggagttggtaagaaaaaagtaagaatgcaaatgcaacaatcaagttagaacctgcaaacttacatgtttggatactatgcatctaccacattataaaacgctctaaatatttacatttttggtaatctttattgacctgccttgccttgccctgcaggtagctgcgtaatatgtgatggggcatcggcgacgagcaccaggcgggcattataagaagaataaaagcagttcaaggcactttattccctttttttttcttctgttcttcctctattgtgttaggataaatgtaatggtagaagcaactgtttttcagatgttttgggagtgaatgataccgtgcttgaattttcc</dnaseqindica>|
| + | ==Labs working on this gene== |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001068138.1 RefSeq:Os08g0345800]|
| + | * Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba City, Ibaraki, 305-8572 Japan |
| − | }}
| + | * Faculty of Bioresource Sciences, Akita Prefectural University, Akita City, Akita, 010-0195 Japan |
| − | [[Category:Genes]] | + | |
| − | [[Category:Japonica mRNA]]
| + | ==References== |
| − | [[Category:Oryza Sativa Japonica Group]] | + | <references> |
| − | [[Category:Japonica Genes]]
| + | * <ref name="ref1"> |
| − | [[Category:Japonica Chromosome 8]] | + | Akihiro T, Mizuno K, Fujimura T. Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA. Plant Cell Physiol. 2005 Jun;46(6):937-46. PubMed PMID: 15821022. |
| − | [[Category:Chromosome 8]]
| + | </ref> |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]] |
