Difference between revisions of "Os07g0169700"

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(Created page with "{{JaponicaGene| GeneName = Os07g0169700| Description = Similar to GA 20-oxidase 3| Version = NM_001065522.1 GI:115470776 GeneID:4342506| Length = 2303 bp| Definition = Or...")
 
(References)
 
(10 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''''Os07g0169700''''' was reported as '''''OsGA20ox3''''' in 2013 <ref name="ref1" /> by researchers from Korea and China.  
GeneName = Os07g0169700|
 
Description = Similar to GA 20-oxidase 3|
 
Version = NM_001065522.1 GI:115470776 GeneID:4342506|
 
Length = 2303 bp|
 
Definition = Oryza sativa Japonica Group Os07g0169700, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os07g0169700''''' '''<=>''' '''''OsGA20ox3'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
|
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* Gibberellin (GA) 20-oxidase (GA20ox) catalyses consecu- tive steps of oxidation in the late part of the GA biosynthetic pathway.
Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
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* '''''OsGA20ox3''''' plays a positive role in plant stature of rice and suggest that '''''OsGA20ox3''''' overexpression is likely the reason for the elongated phenotype of 17S-14 mutant plants.
AP = Chromosome 7:3734498..3736800|
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* Increase '''''OsGA20ox3''''' expression enhances rice susceptibility to pathogens.
CDS = 3734498..3734976,3736176..3736800|
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* '''''OsGA20ox3''''' plays an important role in regulating not only plant stature but also disease resistance in rice.
GCID = <gbrowseImage1>
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name=NC_008400:3734498..3736800
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===Expression===
source=RiceChromosome07
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* RT-PCR analysis of the OsGA20ox3 transcript was performed using total RNA isolated from various organs of the WT and 17S-14 plants. OsGA20ox3 was broadly expressed in vegetative organs of 2-week-old seedlings, including leaves, sheaths, and roots.
preset=GeneLocation
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* The OsGA20ox3 transcript was most abundant in the panicles and not detected in leaves, sheaths, culms, or roots at the heading stage of rice. In contrast, the OsGA20ox3 transcript accumulated at high levels in all organs examined in the 17S-14 plants.
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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[[File:Os07g0169700-1.png|center|thumb|800px|'''Figure 1.''' ''Expression patterns of '''OsGA20ox3''' in wild-type (WT) and 17S-14 mutant (MT) plants were examined by reverse-transcriptase polymerase chain reaction.<ref name="ref1" />.'']]
name=NC_008400:3734498..3736800
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source=RiceChromosome07
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You can also add sub-section(s) at will.
preset=GeneLocation
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</gbrowseImage2>|
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==Labs working on this gene==
CDNA = <cdnaseq>atggcagccgtggtgttcgacgcggcgatcctgagcaagcaggaggcgatcccggcgcagttcgtctggccggccgacgaggcgccggcggcggacgacggcgtggtggaggagatcgccatccccgtcgtcgacctggccgcgttcctcgccagcggcggcattgggcgcgacgtggcggaggcgtgcgagcggcacgggttcttccaggtggtgaaccacggcgtcgacccggcgctgctcgccgaggcgtaccgctgctgtgacgcgttctacgcgcggccgctcgccgagaagcagcgcgcgcggcgccgccccggcgagaaccacggctacgcgagcagcttcacggggcggttcgactgcaagctgccgtggaaggagaccatgtcgttcaactgctccgccgcgccggggaacgcgcgcatggtcgccgactatttcgtcgacgccctcggcgaggaataccgccacatgggggaggtgtaccaggagtactgcgacgtgatgacgcggctggcgctggacgtgacggaggtgctcgcggtggcgctcgggctcggccgcggcgagctccgcggcttcttcgccgacggcgacccggtgatgcggctgaaccactacccgccgtgccggcagccgcacctgacgctgggcacgggcccgcaccgcgacccgacgtcgctgacgctgctccaccaggacgacgtcggcggcctgcaggtgctccccgacgacgccgcggcggcggcgggcgggtggcgcgccgtgcgcccgcgcgccgacgcgttcgtcgtcaacatcggcgacacgttcgcggcgctcaccaacgggcgccacgccagctgcctccaccgcgccgtggtgaacggccgcgtcgcgcgcaggtcgctcaccttcttcctcaacccgcgcctcgaccgcgtcgtgtcgccgccgccggcgctcgtcgacgccgcgcacccgcgcgcgttcccggacttcacgtggcgcgagttcctcgagttcacgcagaggcactaccggtcggacaccaacaccatggacgccttcgtcgcctggatcaagcaaaggaatggctatgaaagcctcgacaagtactag</cdnaseq>|
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* State Key Laboratory of Agrobiotechnology and 2 Department of Plant Pathology, China Agricultural University, Yuanmingyuan West Road 2, Beijing 100193, China
AA = <aaseq>MAAVVFDAAILSKQEAIPAQFVWPADEAPAADDGVVEEIAIPVV                    DLAAFLASGGIGRDVAEACERHGFFQVVNHGVDPALLAEAYRCCDAFYARPLAEKQRA                    RRRPGENHGYASSFTGRFDCKLPWKETMSFNCSAAPGNARMVADYFVDALGEEYRHMG                    EVYQEYCDVMTRLALDVTEVLAVALGLGRGELRGFFADGDPVMRLNHYPPCRQPHLTL                    GTGPHRDPTSLTLLHQDDVGGLQVLPDDAAAAAGGWRAVRPRADAFVVNIGDTFAALT                    NGRHASCLHRAVVNGRVARRSLTFFLNPRLDRVVSPPPALVDAAHPRAFPDFTWREFL                    EFTQRHYRSDTNTMDAFVAWIKQRNGYESLDKY</aaseq>|
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DNA = <dnaseqindica>1..479#1679..2303#atggcagccgtggtgttcgacgcggcgatcctgagcaagcaggaggcgatcccggcgcagttcgtctggccggccgacgaggcgccggcggcggacgacggcgtggtggaggagatcgccatccccgtcgtcgacctggccgcgttcctcgccagcggcggcattgggcgcgacgtggcggaggcgtgcgagcggcacgggttcttccaggtggtgaaccacggcgtcgacccggcgctgctcgccgaggcgtaccgctgctgtgacgcgttctacgcgcggccgctcgccgagaagcagcgcgcgcggcgccgccccggcgagaaccacggctacgcgagcagcttcacggggcggttcgactgcaagctgccgtggaaggagaccatgtcgttcaactgctccgccgcgccggggaacgcgcgcatggtcgccgactatttcgtcgacgccctcggcgaggaataccgccacatggggtaagtatacacacacacctggctccgagttctacttatttcattttaatcttgaaagagagatttcgtatgatttcttgaacacattgatttttcatacaattttcaaggaatttcgtatgatacacaagttcaattcaggttggattatctagaattaaaacctcacgttccacacgaggccttcttaaaaaatataatagatctttcgatttgattacattcttgtcctttttactccctccattacaaaatataatgacttctaacatttaaaatttatctcataatataacaaccttttcactagcatttttttcccaactaattacaacgctacaccatttaattctccctacatacattcatttttcaacccatcacagcaatcccccatttgacggaggtagtactttgcaactttgaccactctttttttaaataaatatttaaaagagattatattattaaagtattttacatgctaaatacaaacaatactgcttacattcatcgaaacattttacttaaaagtttattttgatcaaagattaacactggtcaacaatgtcaaataaaaataaaaaggaactattttgcagtataagaaagccaggttcagtaatccacatggtataacagggtagcttatcactgttttagtcatattaattattatattattcaataattagatcaggggtccttattttatttctgatttgtcactacgtataaataaaataaattaaagttgggtagttttgtttgctgccacatactgccatgctaaatgttagacgcgccacactttattaagcaactgtttgattgagcgttttaattgagataagctacactttattaaacatattagcaaacatgtcatcaacttattttttagccaaactgtgccacgcttataattaaccaacaacagccacacatttggcattttgaatgtggtagcagaaagtgcaccacacgaggcaatagtacgtgcgtggcacaattattgacaccggaggcatgcatgtataaatttgtctattatcaatattctatcctgaactaacattttgttcaaaccttaattaacacatcgacaaactcagttagcatttgctcaaacaaaaaacttccaaattaaattaagattagtgtacacacatgtatggacgtgttgtgtttacatgcagggaggtgtaccaggagtactgcgacgtgatgacgcggctggcgctggacgtgacggaggtgctcgcggtggcgctcgggctcggccgcggcgagctccgcggcttcttcgccgacggcgacccggtgatgcggctgaaccactacccgccgtgccggcagccgcacctgacgctgggcacgggcccgcaccgcgacccgacgtcgctgacgctgctccaccaggacgacgtcggcggcctgcaggtgctccccgacgacgccgcggcggcggcgggcgggtggcgcgccgtgcgcccgcgcgccgacgcgttcgtcgtcaacatcggcgacacgttcgcggcgctcaccaacgggcgccacgccagctgcctccaccgcgccgtggtgaacggccgcgtcgcgcgcaggtcgctcaccttcttcctcaacccgcgcctcgaccgcgtcgtgtcgccgccgccggcgctcgtcgacgccgcgcacccgcgcgcgttcccggacttcacgtggcgcgagttcctcgagttcacgcagaggcactaccggtcggacaccaacaccatggacgccttcgtcgcctggatcaagcaaaggaatggctatgaaagcctcgacaagtactag</dnaseqindica>|
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==References==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065522.1 RefSeq:Os07g0169700]|
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<references>
}}
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* <ref name="ref1">
[[Category:Genes]]
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Qin, Xue, et al. "Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice." Molecular plant-microbe interactions 26.2 (2013): 227-239.
[[Category:Japonica mRNA]]
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</ref>
[[Category:Oryza Sativa Japonica Group]]
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[[Category:Japonica Genes]]
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</references>
[[Category:Japonica Chromosome 7]]
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[[Category:Chromosome 7]]
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==Structured Information==
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]

Latest revision as of 07:32, 8 October 2016

The rice Os07g0169700 was reported as OsGA20ox3 in 2013 [1] by researchers from Korea and China.

Annotated Information

Gene Symbol

  • Os07g0169700 <=> OsGA20ox3

Function

  • Gibberellin (GA) 20-oxidase (GA20ox) catalyses consecu- tive steps of oxidation in the late part of the GA biosynthetic pathway.
  • OsGA20ox3 plays a positive role in plant stature of rice and suggest that OsGA20ox3 overexpression is likely the reason for the elongated phenotype of 17S-14 mutant plants.
  • Increase OsGA20ox3 expression enhances rice susceptibility to pathogens.
  • OsGA20ox3 plays an important role in regulating not only plant stature but also disease resistance in rice.

Expression

  • RT-PCR analysis of the OsGA20ox3 transcript was performed using total RNA isolated from various organs of the WT and 17S-14 plants. OsGA20ox3 was broadly expressed in vegetative organs of 2-week-old seedlings, including leaves, sheaths, and roots.
  • The OsGA20ox3 transcript was most abundant in the panicles and not detected in leaves, sheaths, culms, or roots at the heading stage of rice. In contrast, the OsGA20ox3 transcript accumulated at high levels in all organs examined in the 17S-14 plants.
Figure 1. Expression patterns of OsGA20ox3 in wild-type (WT) and 17S-14 mutant (MT) plants were examined by reverse-transcriptase polymerase chain reaction.[1].

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Agrobiotechnology and 2 Department of Plant Pathology, China Agricultural University, Yuanmingyuan West Road 2, Beijing 100193, China

References

  1. 1.0 1.1 Qin, Xue, et al. "Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice." Molecular plant-microbe interactions 26.2 (2013): 227-239.

Structured Information