Difference between revisions of "Os07g0191600"

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(Created page with "{{JaponicaGene| GeneName = Os07g0191600| Description = ABC transporter related domain containing protein| Version = NM_001188160.1 GI:297725450 GeneID:9272142| Length = 39...")
 
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(6 intermediate revisions by 4 users not shown)
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{{JaponicaGene|
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The rice gene Os07g0191600 was reported as '''''STR2''''' in 2012<ref name="ref1" /> by researchers from Switzerland, Korea, USA and France.
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GeneName = Os07g0191600|
 
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Description = ABC transporter related domain containing protein|
 
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Version = NM_001188160.1 GI:297725450 GeneID:9272142|
 
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Length = 3917 bp|
 
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Definition = Oryza sativa Japonica Group Os07g0191600, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os07g0191600 <=> STR2,OsSTR2
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Function===
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Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
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* The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice.
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AP = Chromosome 7:4972834..4976750|
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===Mutation===
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CDS = 4975950..4976750|
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* Mutation of either of the Oryza sativa (rice) ABCG transporters blocked arbuscule growth of different AM fungi at a small and stunted stage, recapitulating the phenotype of Medicago truncatula stunted arbuscule 1 and 2 (str1 and str2) mutants that are deficient in homologous ABCG genes.
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GCID = <gbrowseImage1>
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name=NC_008400:4972834..4976750
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===Sublocalization===
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source=RiceChromosome07
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* The STR1/STR2 complex resides in the peri-arbuscular membrane, which represents the plant border of the apoplastic symbiotic interface
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preset=GeneLocation
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</gbrowseImage1>|
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===Evolution===
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GSID = <gbrowseImage2>
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name=NC_008400:4972834..4976750
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You can also add sub-section(s) at will.
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source=RiceChromosome07
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==Labs working on this gene==
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preset=GeneLocation
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*Department of Plant Molecular Biology, University of Lausanne, Biophore Building, 1015 Lausanne, Switzerland,
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</gbrowseImage2>|
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*Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA,
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CDNA = <cdnaseq>atggcgcaccggcacgtcggcgacctggaggcggcggcgtacggcggcggccggttcgggttcaccggcggcctggagttcaccgggctgacgtacacggtgaccaagaagcagcgcggcgccggcggcgagtgggagaagaaggaggtggacctgctgcacgaggtcaccgggtacgcccccaagggctgcgtcaccgccgtgatgggccccagcggcgccggcaagtcgacgctcctcgacgcgctcgccggccgcatcgccgcccgcctcggcggccgcgtcgcgctcgacggcgtggaggtgagccccggcctcgtcaagcgctgctccgcctacgtcatgcaggacgaccgcctcttccccatgctcaccgtccgcgagaccctcatgttcgccgccgacctccgcctcggcgcctccgtccccgccgccgacaagcgccgccgcgtcgacgccctcatcgaccagctcggcctcgcggcgtccgggaacacgtacatcggcgacgaggggacccggggcgtgtccggcggcgagcggcggcgtgtgtcgatcggcgtggacatcatccatggccccgcgctgctgttcctcgacgagccgacgtccggtctggactccacgagcgcgcacagcgtggtcgagaaggtgcgcgacatcgcctgcgccgggagcaccgtcgtgctcaccatccaccagccgtcgtcgcgcatcctgcagctgctcgaccacctcgtcattctcgcgcgtgggcagctcatgtacagcggcgcgccacgggaggtcgccgcccacctc</cdnaseq>|
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*Crop Biotech Institute and Department of Plant Molecular Systems Biotechnology, Kyung Hee University, Yongin 446-701, Korea,
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AA = <aaseq>MAHRHVGDLEAAAYGGGRFGFTGGLEFTGLTYTVTKKQRGAGGE                    WEKKEVDLLHEVTGYAPKGCVTAVMGPSGAGKSTLLDALAGRIAARLGGRVALDGVEV                    SPGLVKRCSAYVMQDDRLFPMLTVRETLMFAADLRLGASVPAADKRRRVDALIDQLGL                    AASGNTYIGDEGTRGVSGGERRRVSIGVDIIHGPALLFLDEPTSGLDSTSAHSVVEKV                    RDIACAGSTVVLTIHQPSSRILQLLDHLVILARGQLMYSGAPREVAAHL</aaseq>|
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*CIRAD, UMR AGAP 1096, TA 108/03 Avenue Agropolis, 34398 Montpellier Cedex 5, France, and
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DNA = <dnaseqindica>3117..3917#aacacacaaaagcaacgccaagcctcgcacgcgcgcgaggccgacgcaaggaggagaggctgccccggggggagagagagatcacccgcctcgccgcccgcccgcgccgcggcggatcgatggagctgttcgagcgcgcgaggacggtgcggctgcgcggccaccatgacaagtacctgtacgcggaggaggacgagtcgcgcgtctcccaggaccggagcgcctcgtccccgaacgcgcggtggtccgtcgagccggtcccccacgcccccggcgtcctccgcctccgcagccactacggccgctacctctccgcctccaacgagcccttcctcctcggcgtcaccggccgcaaggtcctccaggccctcccccaccgcctcgactcctccgtcgagtgggtccccgtccgcgacggcgcccacgcccgcctccgcacccgctacggcaactacctccgcgccaacggcggcctcccgccgtggcgcaactccgtcacccacgacgtcccccaccgccacgccgggtggatcctctggaccgtcgaggtcgtcgaggtcctcccggaatccctcgtccccgcccccatcgcctccgacgacgaccccgccgcgccgcattacaagacaccttctcgcgggccctctcccgtgccgacgccggcgctggcgcctgcttcgccgccgcggcaccgtccggcgagcccaccttcgtacttagcgcggccaccgccgccgccaccgggctacatcgagccaccacagggatacatcgagccacctccaccggagcccaccctggcgagaattgaggtccgtactttccacgcccgccatctgctcgacgaattgtacagcccaacagggatgttagatgaaaatgccaagtgcttattgttgttgcggacgcattttgccattttagtccacagaatccttctcgctgccgctgcacaaggtggatgggcgggcgatccactaccacattggggatgacaacggcgacatcggcgatgatcaggaaggacactcattcacgttcaacgggactagcctggaggagcttttggagaggttgcaggaggagacggggctcaacgacgtgattatctgctctcgtagcccgatcaatgggaagctcatgcccctccgcttgcagctgccgcccaacaacgccgccatgcatatcgtgctcgtgcgtgagtcatcaaaaggtgggcttttcttttcatcagttattgctcataccattagattcacatttcacaccggtggaacatgatatgttgaatcatggaatttaacgatacctactaaatttctatataccattagattgatacttgataggcctcctataagcacaatataccatcctttcttcagtgttagctgaagtgctcaactgtgtataaaatggtgaacttcaaacataaaaataggttaattcagaatgctaacattttaagttgagtttttggttatgcagatatttgtcgttatttagtcaatgcacactgagccaacatcccctaaacatttgctaaatcctgtatagtagatgctagtttaaattcctttattgaaatagctgcaacacaataatattgtggcatgccatgaccttatcatatttactgaccatcaaatatacttggcggaaaatggaagctaaaatgcatattgataagatatcgattttgtgtaaagttaaaattttcaagttaggacgttttagtgactaacactacgattttgttcttatttcttactctgatagaaatgttttatctttcagtggcaaaatcatttccatgaccatgtggtaaaatttgaagagggtggtgtcagcgactcaaatcaagcaagaactgtgcatctgttgtatatattgtaatccctgtttattatcagttccactggctaccataatcaagtattattcttccatcttcaggagatctcattcttgtaagtatttgcttctgtcaacttttttatcatttattcaacaggtagagtgatctctggtagctaaagacccttcaaaatgcctatcctgtcattcctcagttctatagaataaactattctctaggaaatccacttgttctccttttccattttgattttaatacataaaatcagaatgtcattgttaattaattacccgtgaaggtatattactgcagaaaaaccagaaacttatttcatatttgtagattaatcccatatatgttcttagcatgaacaaccgatctaacttctggggcaatttcaatggtctgggaccatggggtctgttttgacatgcatggcttcaactcgaccttcctcagtacgcgatgagaattgttgaggggactatgctggtattttgcttgagaccttttttattttaacggtcattacactacaagttacatataattacatctgtcaaatttttattagaaaatttgtcgataaatatatagcaaattcgatccaatgttgatgaagctttcaggccttgttcggaatgatccgaacccagcctttcctataggcgaatgtgccggggcacaacaagcaaggccttacagttcagctgatttttttaaaaacttaccttcaataaacaaataggccgaattttttgaattgtggatgcatctttacatttcggaatcaaggtaatgataccatagtttaaccttgcaatatcaattctaccatcatggaagtcatcaattaattatttcaaatcagatctaatgatttcccacaaaattttatagaattcaatggggggaaatcccaattcgttttgcttttaccaacaagatgggataatccttaggatttcctttctccaaattcatggatattggagctcgttcactgctgttctatgcttctagacgtaggagaaaacaaccaaaaaaaactgaccttacaagacgttcactccgatgacacgttacactcttcaccctcatttctgtcgccccaacacttgtatctaccaaccttccaaaatcacgaagctgttagtcccatgcaataacatcacaaagccactttatatgcgtaagcatttgcacacaagctagagacactcacccactgctcgccatggcgcaccggcacgtcggcgacctggaggcggcggcgtacggcggcggccggttcgggttcaccggcggcctggagttcaccgggctgacgtacacggtgaccaagaagcagcgcggcgccggcggcgagtgggagaagaaggaggtggacctgctgcacgaggtcaccgggtacgcccccaagggctgcgtcaccgccgtgatgggccccagcggcgccggcaagtcgacgctcctcgacgcgctcgccggccgcatcgccgcccgcctcggcggccgcgtcgcgctcgacggcgtggaggtgagccccggcctcgtcaagcgctgctccgcctacgtcatgcaggacgaccgcctcttccccatgctcaccgtccgcgagaccctcatgttcgccgccgacctccgcctcggcgcctccgtccccgccgccgacaagcgccgccgcgtcgacgccctcatcgaccagctcggcctcgcggcgtccgggaacacgtacatcggcgacgaggggacccggggcgtgtccggcggcgagcggcggcgtgtgtcgatcggcgtggacatcatccatggccccgcgctgctgttcctcgacgagccgacgtccggtctggactccacgagcgcgcacagcgtggtcgagaaggtgcgcgacatcgcctgcgccgggagcaccgtcgtgctcaccatccaccagccgtcgtcgcgcatcctgcagctgctcgaccacctcgtcattctcgcgcgtgggcagctcatgtacagcggcgcgccacgggaggtcgccgcccacctc</dnaseqindica>|
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*Department of Plant Biology, University of California Davis, Davis, CA 95616, USA
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001188160.1 RefSeq:Os07g0191600]|
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}}
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==References==
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[[Category:Genes]]
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<references>
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[[Category:Japonica mRNA]]
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* <ref name="ref1">
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[[Category:Oryza Sativa Japonica Group]]
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Gutjahr C, Radovanovic D, Geoffroy J, Zhang Q, Siegler H, Chiapello M, Casieri
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[[Category:Japonica Genes]]
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L, An K, An G, Guiderdoni E, Kumar CS, Sundaresan V, Harrison MJ, Paszkowski U.
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[[Category:Japonica Chromosome 7]]
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The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal
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[[Category:Chromosome 7]]
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arbuscule formation in rice. Plant J. 2012 Mar;69(5):906-20. doi:
 +
10.1111/j.1365-313X.2011.04842.x. PubMed PMID: 22077667.
 +
</ref>
 +
</references>
 +
 
 +
==Structured Information==
 +
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]]

Latest revision as of 15:13, 6 May 2017

The rice gene Os07g0191600 was reported as STR2 in 2012[1] by researchers from Switzerland, Korea, USA and France.

Annotated Information

Gene Symbol

  • Os07g0191600 <=> STR2,OsSTR2

Function

  • The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice.

Mutation

  • Mutation of either of the Oryza sativa (rice) ABCG transporters blocked arbuscule growth of different AM fungi at a small and stunted stage, recapitulating the phenotype of Medicago truncatula stunted arbuscule 1 and 2 (str1 and str2) mutants that are deficient in homologous ABCG genes.

Sublocalization

  • The STR1/STR2 complex resides in the peri-arbuscular membrane, which represents the plant border of the apoplastic symbiotic interface

Evolution

You can also add sub-section(s) at will.

Labs working on this gene

  • Department of Plant Molecular Biology, University of Lausanne, Biophore Building, 1015 Lausanne, Switzerland,
  • Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA,
  • Crop Biotech Institute and Department of Plant Molecular Systems Biotechnology, Kyung Hee University, Yongin 446-701, Korea,
  • CIRAD, UMR AGAP 1096, TA 108/03 Avenue Agropolis, 34398 Montpellier Cedex 5, France, and
  • Department of Plant Biology, University of California Davis, Davis, CA 95616, USA

References

  1. ↑ Gutjahr C, Radovanovic D, Geoffroy J, Zhang Q, Siegler H, Chiapello M, Casieri L, An K, An G, Guiderdoni E, Kumar CS, Sundaresan V, Harrison MJ, Paszkowski U. The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice. Plant J. 2012 Mar;69(5):906-20. doi: 10.1111/j.1365-313X.2011.04842.x. PubMed PMID: 22077667.

Structured Information