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| − | {{JaponicaGene|
| + | The rice gene Os07g0204900 was reported as '''''OsZDS''''' in 2008<ref name="ref1" /> by researchers from China. |
| − | GeneName = Os07g0204900|
| |
| − | Description = Similar to Zeta-carotene desaturase (Fragment)|
| |
| − | Version = NM_001065680.1 GI:115471092 GeneID:4342680|
| |
| − | Length = 5500 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os07g0204900, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os07g0204900 <=> OsZDS,ZDS |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
| + | * '''''OsZDS''''' encodes ζ-carotene desaturase which is a major enzymes of the carotenoid biosynthesis pathway. |
| − | AP = Chromosome 7:5677782..5683281|
| + | |
| − | CDS = 5677933..5678098,5678436..5678560,5678666..5678800,5679128..5679200,5679581..5679654<br>,5680292..5680396,5680637..5680881,5680965..5681052,5681202..5681244<br>,5681319..5681475,5681648..5681776,5682012..5682084,5682281..5682445<br>,5682651..5682809|
| + | ===Mutation=== |
| − | GCID = <gbrowseImage1>
| + | * Carotenoids were almost undetectable in phs2-1 or phs2-2 ('''''Oszds''''' mutants) seedlings at 460 nm. In phs2 seedlings only small peaks of n-carotene and its isomers were detected at 430 nm, which were absent in the wild type. |
| − | name=NC_008400:5677782..5683281
| + | * In wild types, chloroplasts were well-developed and organized in the mesophyll cells, in contrast, no plastid- or chloroplast-like structures were found in the mesophyll cells of albino mutants (phs2). |
| − | source=RiceChromosome07
| + | ===Expression === |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | ===Evolution=== |
| − | name=NC_008400:5677782..5683281
| + | |
| − | source=RiceChromosome07
| + | You can also add sub-section(s) at will. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | ==Labs working on this gene== |
| − | CDNA = <cdnaseq>atggccatggctgccacgtcccgcgcgccgtccacgctggccccggcgtcgttctccgccgccggcggcagcaggaggcggcgccggtgcccgaatcccagggtgcgggtgggggtgggggtgcggtgctcgctcgacagcaacgtctccgacatggccgtcaacgctccgaaaggattgttcccgccggagccggagcactacagggggccgaagctgaaggtggccatcataggggccggcctcgccggcatgtccaccgcggtggagctcttggaccagggccatgaggttgatctgtacgagtcccggccgtttatcggcggcaaagtcggttcttttgtggataggaaagggaaccatatcgagatggggctgcacgtgttcttcgggtgttacagcaatcttttccgccttatgaagaaggttggagctgataataatctgctagtgaaggagcatacccatacatttgtaaataaaggaggcacgattggtgaacttgattttcggtttcctgtgggagctccgttacatggtatccaagcattcctacgaactaaccaactcaaggtttatgataaagcaagaaatgccgttgctcttgctctaagcccagttgttcgagctcttgttgatccagatggtgcattgcagcaagtacgggatttggatgatgtaagtttcagcgattggttcttgtcgaaaggtggtactcgagagagcatcacaaggatgtgggatcctgttgcctatgctcttggtttcattgactgtgataatatcagtgcacgttgcatgcttaccattttcactctgtttgccacaaaaacagaggcatctttattacgcatgctaaagggttcacctgatgtttatctgagtggtccaataaagaagtacataacagacaggggtggtaggtttcacctgaggtggggatgtagggaggttctctatgataagtcacctgatggggaaacctatgttaaaggccttctcctatccaaggctacaagtagagagataatcaaagcagatgcatatgtcgcagcttgtgatgtcccggggatcaaaagacttttaccttctgaatggaggcaatgggatacatttgacaacatctacaagttagatggtgttcctgtagtcacagtacagcttcgttataatggatgggttacagaacttcaagatttggagaaatcaagacaactgaaaaaggcagttggcttggataatcttctctacactccagatgcagatttttcatgtttttcagaccttgcactttcatctcctgctgactactacattgaaggacaaggttccttgatccaagctgtgctaacccctggcgatccttacatgccattgccgaatgaggagataattagcaaggttcaaaagcaggtcttagaattgttcccgtcatcacaaggcttggaacttacatggtcgagtgtggtgaaaatcggtcaatcattgtaccgcgagtcaccaggaaatgatccatttagacctgatcaaaagacaccagttaaaaacttcttcctgtctggctcttacacaaaacaggactacattgacagcatggaaggggcaactctctcaggcaggagaaccgcggcctacatctgtggtgcaggagaggagctgctcgccctccgaaagaagctcattgtcgacgacagcgagaaggccaggggtaaggtcgaggcccttcagacaagctga</cdnaseq>|
| + | *State Key Laboratory of Plant Genomics and National Centre for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences (CAS), Beijing 100101, China, |
| − | AA = <aaseq>MAMAATSRAPSTLAPASFSAAGGSRRRRRCPNPRVRVGVGVRCS LDSNVSDMAVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDLYE SRPFIGGKVGSFVDRKGNHIEMGLHVFFGCYSNLFRLMKKVGADNNLLVKEHTHTFVN KGGTIGELDFRFPVGAPLHGIQAFLRTNQLKVYDKARNAVALALSPVVRALVDPDGAL QQVRDLDDVSFSDWFLSKGGTRESITRMWDPVAYALGFIDCDNISARCMLTIFTLFAT KTEASLLRMLKGSPDVYLSGPIKKYITDRGGRFHLRWGCREVLYDKSPDGETYVKGLL LSKATSREIIKADAYVAACDVPGIKRLLPSEWRQWDTFDNIYKLDGVPVVTVQLRYNG WVTELQDLEKSRQLKKAVGLDNLLYTPDADFSCFSDLALSSPADYYIEGQGSLIQAVL TPGDPYMPLPNEEIISKVQKQVLELFPSSQGLELTWSSVVKIGQSLYRESPGNDPFRP DQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRRTAAYICGAGEELLALRKKLIVDDSE KARGKVEALQTS</aaseq>|
| + | *Graduate University of the CAS, Beijing 100039, China, |
| − | DNA = <dnaseqindica>152..317#655..779#885..1019#1347..1419#1800..1873#2511..2615#2856..3100#3184..3271#3421..3463#3538..3694#3867..3995#4231..4303#4500..4664#4870..5028#acggaggccgacaaatccgctgctcgacggcatcttcgcctcctcccccacccgcatcctcttccacctctcgcgctcacgccatttatactctcctcctcctcctcctcctctactcctagcagcagcgttggttggtgagctgaggcatatggccatggctgccacgtcccgcgcgccgtccacgctggccccggcgtcgttctccgccgccggcggcagcaggaggcggcgccggtgcccgaatcccagggtgcgggtgggggtgggggtgcggtgctcgctcgacagcaacgtctccgacatggccgtcaacggtgagggtttcttgggtttcgttttctccggtcgattctttcttctgcggtgccactccgctctccccctagagattcttgaacggttttggtatatggatagaaccaaggagacacaaattcttgaaccctggattttggtggctctgaactgaactgaatttgtggattagttagttagttagttgttgcttgtgatgagtctgaccatgtgtagtagctagattcttcttttctaggttcattcagtagctttctacaggattacctgaatatgctgctgactgtgaaaggctgaaagcaattgaattggggatcttttttccgtgtgtggcagctccgaaaggattgttcccgccggagccggagcactacagggggccgaagctgaaggtggccatcataggggccggcctcgccggcatgtccaccgcggtggagctcttggaccagggccatgaggtttcttcaattcattgcctgcaatgatgtccgtgttctgctcttccagggaaaagacagtgatttttggtttaccaaaattggggtgatgttcctcttttgcaggttgatctgtacgagtcccggccgtttatcggcggcaaagtcggttcttttgtggataggaaagggaaccatatcgagatggggctgcacgtgttcttcgggtgttacagcaatcttttccgccttatgaagaaggtaattttctatgttctttcagatggttggagaatgtctacttttcaagtattttgttaatctagactgcactaagtagataatggagctgagttagatgcttcttccatcatgaaaagttaggaatgccatctgtttgcacttactagagtatggtaaatctgtactcccggagtatattgtgaggagaacatgctatctttatttttgtctatatgaagcatgtagtcaattactttatttcatgagtcggataatttgtactttttctgtattagccaggtttgacactaactgttaatcgagttcaaccttattttgtttcaggttggagctgataataatctgctagtgaaggagcatacccatacatttgtaaataaaggaggcacgattggtggtatgttcagttatcctatacccatgtgcctaacagttgtaggagttgtggtgtttttttacttgtcgtgctgaaatcattcttcattacttttgagctacctttcatagaaagttaaaccgttgctaatatttaaagtttacaaagtgtaaattactatgagacgatttgctagaacactaattgttcttttgtgggcggcaaaaaaaaagtgctctggcgtgttattttcttgatcttgcattaggccaatactgataagacaacttgccatatttctactaagtgtgctaaactaactcaagtgtattttgctatgtatttatattccacttattttctaaactttcatactatttgctttgctaattgctatacagaacttgattttcggtttcctgtgggagctccgttacatggtatccaagcattcctacgaactaaccaactcaaggtaattactctaaattcatgtccggtaactaggatatcaaactttgactatctttattgaccatgtttaatcacaatattttgactttccaacttattgtaatattcttgctttgaactctgtcaaagtcatgcccacgcttctaacagtatcctcatttttatactctgtattcataccttttagtcacacgccattactttttgaatatagtgcttggcgctttggggcacaatgtaatcagctgagttgagtgtaaatattccttgaaagctcctaaaagtgattggtctgtttaatattccttgcagactgtgataatctactaaagatgtggctttctgtgatatttgtattgtcatgaatcaaagcattgtaatgtcttcctacctgtctatatatgcaaattgcatagctagttcttgattgccatgtcaccagatagaatgtgatatggattcttctaaatcttgttataattcataattgaaagattctataagggtgataagcatatttgttaaggattctataaggattcataaaccttcaactttgcccatctattttatacagtacatatttgttagatggattcaatatatggactaattaaaatatttgaatcatgtttcaggtttatgataaagcaagaaatgccgttgctcttgctctaagcccagttgttcgagctcttgttgatccagatggtgcattgcagcaagtacgggatttggatgatgtatgtatctctctcctcttatttaagtgtcattaggagtgtatatctactgtctaggcaatgcatcattatatctcgaatctggaacataggttactagtgcacttccttctgtttcattctcatcacaattagttatataaacatatgcactataaatatcgtagaactgttattaatgaaaaatcagaggtagatagcttctatctaaaggttaatttgcaagtgtacttttttcaggtaagtttcagcgattggttcttgtcgaaaggtggtactcgagagagcatcacaaggatgtgggatcctgttgcctatgctcttggtttcattgactgtgataatatcagtgcacgttgcatgcttaccattttcactctgtttgccacaaaaacagaggcatctttattacgcatgctaaagggttcacctgatgtttatctgagtggtccaataaagaagtacataacagacaggggtggtaggtatgatggcaaagaccgaaatttgttttgcattagtatgtactgcaccgttgaaagcttacatcatttaacaaatccttcaggtttcacctgaggtggggatgtagggaggttctctatgataagtcacctgatggggaaacctatgttaaaggccttctcctatccaaggttagcaccattatctatgaagtgtggttatcctttgcatgactgtacagctagattatggttgataataatgtgcattgctgtaggcttagcttaacccttttcttgatactttaattgacacttttgccatgcctggacatttttaggctacaagtagagagataatcaaagcagatgcatatgtcgcaggttctttctcttccattttgtctttgactaccacgtcctaccatgcaagattaaattggaattgttgattgtagcttgtgatgtcccggggatcaaaagacttttaccttctgaatggaggcaatgggatacatttgacaacatctacaagttagatggtgttcctgtagtcacagtacagcttcgttataatggatgggttacagaacttcaagatttggagaaatcaaggtaactccagtctcccctccccagttagcccaatatttttatcaatgcccgtgatgcacacattatattttttcataaagagtgcatttgtttgtactgaacaatggccgtacaaatgcagtctgcttttttgcatgatgctgaatgatacctctgtttatctttgatgtagacaactgaaaaaggcagttggcttggataatcttctctacactccagatgcagatttttcatgtttttcagaccttgcactttcatctcctgctgactactacattgaaggacaaggttccttgatccagtaaggctactttctcttccatgttctttgcttttgtggtctggaattaagtttgaccattcagtgttcttgacatttgatatcattcactattgtagctgttagtttgtaattatggtttatttttacacaagcagcttacttggtgactagtgtagtagaactgttgaatttcatgcatcaaattgataactgttgcaattaaaatcaccgtgtgctactacttcatttgtagagctgtgctaacccctggcgatccttacatgccattgccgaatgaggagataattagcaaggttcaaaagcaggtgggtttgtaaataccactctgttgatcaaattattcttgtattccattaccaaaattctagaactggttgttagagatccattgcaaataatgaagcgtgttaattttaaatcaggataatttcttctgcttttgttaattatttcattctttcaaaactcacttcagtgcaaatccatttatgattcatgcaggtcttagaattgttcccgtcatcacaaggcttggaacttacatggtcgagtgtggtgaaaatcggtcaatcattgtaccgcgagtcaccaggaaatgatccatttagacctgatcaaaagacaccagttaaaaacttcttcctgtctggctcttacacaaaacaggtatctaaaccattgacttagtcactgtcaccagtaatcaatcagcgctcatcaaatacaattgttttgattctgtaaatttagattttaagcaggaaggttcgtttggtagatattcgtaatattggatgaaacatatataactgctcctgtaaaagcatgatcgacgatcccatgaactcataatctgctatcttgtttgcaggactacattgacagcatggaaggggcaactctctcaggcaggagaaccgcggcctacatctgtggtgcaggagaggagctgctcgccctccgaaagaagctcattgtcgacgacagcgagaaggccaggggtaaggtcgaggcccttcagacaagctgagcttcctcaaatgacacatgctggagtgagtggattgctatgcccaaaacaaaaacagcttcctgggtgtagtaggcgatttccgcagcgactctcatgtaaatcctacttgattgagcatttaggtccaatctgctgctgccctttttgccttgacacgatcgttcgttcgcccgtcaatggtgtgttcttcgttattgtgaatttgtgattgggaaccaaaggtggcatacgggattacatcaggcagcgtgtgttttgttcagcttaaccgatcattgaacccattgatgatgatgatgatgtttatatagtgcacacatcacttaaaatcttgtgagagatggtgcttaaatttggtgagtactgctgtactttataaggcagctttagagtttttataaggagtatattttgaacattgtgagatgagaaattttagatacttaaaagtacgagttacttaaatttt</dnaseqindica>|
| + | *State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou 310006, China, |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065680.1 RefSeq:Os07g0204900]|
| + | *Centre for Biological Electron Microscopy, Institute of Biophysics, CAS, Beijing 100101, China, |
| − | }}
| + | *State Key Laboratory of Photosynthesis and EnvironmentalMolecular Physiology, Institute ofBotany,CAS,Beijing 100093,China, |
| − | [[Category:Genes]] | + | *National Centre for Gene Research, CAS, Shanghai 200233, China, and |
| − | [[Category:Japonica mRNA]]
| + | *Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, CAS, Beijing 100101, China |
| − | [[Category:Oryza Sativa Japonica Group]] | + | ==References== |
| − | [[Category:Japonica Genes]] | + | <references> |
| − | [[Category:Japonica Chromosome 7]]
| + | * <ref name="ref1"> |
| − | [[Category:Chromosome 7]]
| + | Fang J, Chai C, Qian Q, Li C, Tang J, Sun L, Huang Z, Guo X, Sun C, Liu M, |
| | + | Zhang Y, Lu Q, Wang Y, Lu C, Han B, Chen F, Cheng Z, Chu C. Mutations of genes in |
| | + | synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and |
| | + | photo-oxidation in rice. Plant J. 2008 Apr;54(2):177-89. doi: |
| | + | 10.1111/j.1365-313X.2008.03411.x. PubMed PMID: 18208525; PubMed Central PMCID: |
| | + | PMC2327239. |
| | + | |
| | + | |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]] |
