|
|
| (6 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''''Os07g0217600''''' was reported as '''''Oscyp71Z2''''' in 2013 <ref name="ref1" /> by researchers from China and Japan. |
| − | GeneName = Os07g0217600|
| |
| − | Description = Cytochrome P450 family protein|
| |
| − | Version = NM_001065728.1 GI:115471188 GeneID:4342731|
| |
| − | Length = 7508 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os07g0217600, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Function=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | [[File:123-Os07g0217600.png|right|thumb|327px|'''Figure 3.''' ''Phenotypes of Oscyp71Z2-RNAi plants treated with PXO99 A at the booting stage.<ref name="ref1" />.'']] |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | * '''''Oscyp71Z2''''' plays an important role in bacterial blight resistance by regulating the diterpenoid phytoalexin biosynthesis and H2O2 generation. |
| − | |
| + | * Overexpression of '''''Oscyp71Z2''''' inhibited the H2O2 generation |
| − | Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
| + | * Overexpression of '''''Oscyp71Z2''''' affects ROS-scavenging ability |
| − | AP = Chromosome 7:6526621..6534128|
| + | * '''''Oscyp71Z2''''' involved the production of main diterpenoid phytoalexins in rice |
| − | CDS = 6526638..6527567,6533265..6533888|
| + | ===Expression=== |
| − | GCID = <gbrowseImage1>
| + | * The researchers obtained nine positive '''''Oscyp71Z2'''''-RNAi lines to suppress '''''Oscyp71Z2''''' transcripts in japonica cultivar Nipponbare. None of these plants showed a significant difference in response to PXO99 A infection compared with the wild-type plants (Fig. 2C; Fig. 3A, B). |
| − | name=NC_008400:6526621..6534128
| + | * Suppression of '''''Oscyp71Z2''''' did not significantly increase susceptibility to PXO99 A in Oscyp71Z2-RNAi lines. Functional redundancy among the family members may impair the effect of partial '''''Oscyp71Z2 '''''expression levels. |
| − | source=RiceChromosome07
| + | * Furthermore, 356 putative P450 genes have been identified in the rice genome, another P450 gene perhaps functioned as Oscyp71Z2. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | You can also add sub-section(s) at will. |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008400:6526621..6534128
| + | ==Labs working on this gene== |
| − | source=RiceChromosome07
| + | * College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China |
| − | preset=GeneLocation
| + | * Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China |
| − | </gbrowseImage2>| | + | * Key Laboratory of Integrated Management of Crop Diseases and Pests (Nanjing Agricultural University), Ministry of Education, Nanjing 210095, China |
| − | CDNA = <cdnaseq>atggaggacaaggtgttgctcgctgtgggcgcatcccttgtgttggtcttcctgtccaagctgatatcatcatatgccaagaagccgagactgaacctgccgccggggccatggacgctgccgctgatcggcagcgcccaccacctcgtgtcctggagcgagagcgtgcacagcgtcatcgggaagctggcccgggagcacggccccgtcatgcagctctggttaggcgaggtgcccacggtggtcgcgtcgtcgccggaggcggcgcaggagatcctcagggaccacgacctcatcttcgccgaccgccacttgaccagcaccacggcggctatcaccttcggtggcacggacgtggtgatggcccagtacggcgagcggtggcgccacctccgcaagctgctcacgcaggagctgctgaccgtggcgcgggtgcggtcattccggcgcgtccgcgaagaggaggtggcgcggctcgtgcgcgacctgtcggccgccgcagcgtccggcgccaccgtgaaccttaccgacatggtgaacaggttggtcaacgacaccgtgctccggtgctccgtcgggagccggtgcaagtaccgtgaagagttcctggccgcgctgcacgccatactacaccagacgtcggcgctcagcgtcgccgacctcttcccgtcctccaagctcgcgtcgatggtcgcgacagggccacggaacgttctcgcgaaccgcaacaaagtggagcgcatcatagaggagatcatccaagaacggaagaaccaaatcgaaacggacatgatgagcggcaacgacgacgttggcgataaggcggcggtggagagcaagtcatgctctctcgacgtgttgctcaggctccagaaggaaggcggcacgccaattccaattacaaaccaagttatcaccgttcttttatgggacatgtttggggctggcacggatacgtcgtctacaacactgatttggaccatggcagagctcatgcgctccccaagagtaatggcaaaggtgcaggctgagatgcggcaagccttccaagggaaaaacaccataactgaagatgatcttgcccaactaagctatctaaagatggtattaaaggaatcgtttcgattacattgcccagtgccgctattgtcccctcgcaagtgccgtgagacatgtaagatcatgggctatgatgtacccaaaggtacatctgtatttgtgaatgtgtgggcaatatgcagggatagtatgtattggaagaatgccgaggagttcaagccagagagatttgaagataatgatatagaacttaaagggagtaattttaagtttcttccatttggctctggtcgtagaatatgtcctgggataaatcttgggtgggccaacatggaatttgccttggctaatcttctctaccattttgattggaatctgcccgatggaatgttgcacaaagatcttgatatgcaggagtcgcccggtcttgttgctgctaaatgctctgacctaaatgtgtgtccagttactcacatttcttcgagctgtgcgtaa</cdnaseq>|
| + | * Biotechnology Research Center, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan |
| − | AA = <aaseq>MEDKVLLAVGASLVLVFLSKLISSYAKKPRLNLPPGPWTLPLIG SAHHLVSWSESVHSVIGKLAREHGPVMQLWLGEVPTVVASSPEAAQEILRDHDLIFAD RHLTSTTAAITFGGTDVVMAQYGERWRHLRKLLTQELLTVARVRSFRRVREEEVARLV RDLSAAAASGATVNLTDMVNRLVNDTVLRCSVGSRCKYREEFLAALHAILHQTSALSV ADLFPSSKLASMVATGPRNVLANRNKVERIIEEIIQERKNQIETDMMSGNDDVGDKAA VESKSCSLDVLLRLQKEGGTPIPITNQVITVLLWDMFGAGTDTSSTTLIWTMAELMRS PRVMAKVQAEMRQAFQGKNTITEDDLAQLSYLKMVLKESFRLHCPVPLLSPRKCRETC KIMGYDVPKGTSVFVNVWAICRDSMYWKNAEEFKPERFEDNDIELKGSNFKFLPFGSG RRICPGINLGWANMEFALANLLYHFDWNLPDGMLHKDLDMQESPGLVAAKCSDLNVCP VTHISSSCA</aaseq>|
| + | |
| − | DNA = <dnaseqindica>18..947#6645..7268#acatcgatcctacgggcatggaggacaaggtgttgctcgctgtgggcgcatcccttgtgttggtcttcctgtccaagctgatatcatcatatgccaagaagccgagactgaacctgccgccggggccatggacgctgccgctgatcggcagcgcccaccacctcgtgtcctggagcgagagcgtgcacagcgtcatcgggaagctggcccgggagcacggccccgtcatgcagctctggttaggcgaggtgcccacggtggtcgcgtcgtcgccggaggcggcgcaggagatcctcagggaccacgacctcatcttcgccgaccgccacttgaccagcaccacggcggctatcaccttcggtggcacggacgtggtgatggcccagtacggcgagcggtggcgccacctccgcaagctgctcacgcaggagctgctgaccgtggcgcgggtgcggtcattccggcgcgtccgcgaagaggaggtggcgcggctcgtgcgcgacctgtcggccgccgcagcgtccggcgccaccgtgaaccttaccgacatggtgaacaggttggtcaacgacaccgtgctccggtgctccgtcgggagccggtgcaagtaccgtgaagagttcctggccgcgctgcacgccatactacaccagacgtcggcgctcagcgtcgccgacctcttcccgtcctccaagctcgcgtcgatggtcgcgacagggccacggaacgttctcgcgaaccgcaacaaagtggagcgcatcatagaggagatcatccaagaacggaagaaccaaatcgaaacggacatgatgagcggcaacgacgacgttggcgataaggcggcggtggagagcaagtcatgctctctcgacgtgttgctcaggctccagaaggaaggcggcacgccaattccaattacaaaccaagttatcaccgttcttttatgggtgagtaagcttcacatcactgttttttaatcatttagcatgtcgtctttggtttaggaacagggtgttatttataggttagactatccattttttttaagggatggaccttttttttttttttttgagatggatggtatgattcgcatatgagtgacaagaaaaaaagtgggttggattagtccgtcaggttttgagggatatggttgatccagatcttagtgacacattcccttttaggaatgaatacagtctaactgttccaagccaaacaccctcaaaaagagttttgaggtttcgacttgtccaatccaccccattcaacaaacccaacacatgcttaagttaagttttaacttaacttaaatgaacccaacacatccttccatttaaaacttgccccatgaaattgtgtttttaacaagatatgggaacaacaacctggtaaattaattgagtaaactttccctttaatatgtgcatactcattcaatctatgtattcatggtagattaggggcaatgttcaatcatgagaaacaacattaataggggaatgaaaattacggtaagtgctacttcctccgtttcacaatgtaagactttctagtattgtccacattcatttagatgttaatgaatctagacaatatatatatatatatatattcattaacatctatatataagtggacaatgcttgaaagtcttacattgtgaaacggagggagtaatatgtatgaaatttgctactctctccgtcccacaatataagagattttgaatttttgattgcaacgtttgaccactcgtcttattcaattttttttgcaaatatagaaaacgaaaagttgtgcttaaagtacggtagataataaagtaagtcacaaataaactaaataataatttcaaaaaattttgaataagacgagtggtcaaacgttacaagcaaaaaacctcaaaataccttatattatgggacggagggagtagaaattatgtttaacatagaacatcaatgttatactatattcagtttaatggttatggtaaattgaaatattttaaaattccaaaaatattttaattttatttcttacacctaattaaaatatgtggttttaaaataaccatttatttctcttgcaagtattatatttgttttgcacattacttggatgcgtcattgaaatgtagaaagagttgttatgggtcattgacacaagtgcagaaaatatgtttctaggtggcttataacatgttttcacgggtgtttcttgacccaccttgtgagggcttgaacaaaggaagtacatttgcaggctcatgaaagaaccacacgtgaaaatggatttagacagacgtatatcttatgttcccatcagcaaaatacatttacaaatgatgatttcttatatatggtggccacctgtggatacaagtttttgcaggcggttcagttcagaaaaaccgccggcacaaaaaaaaaatctagctgccatgtagcacggcgagcccatacaaaccattgggagatctcttgtcagaatatattcacgtcaatcacattacaaattcttaaccacattcacattaactgaacattatagattgtgccaattgtgttgatcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattatccatatccacatttggatgcaaaatacatactgaaaatgatagttttaagtcatacaaatccaatctatacatctggctcgcatgagatatatatatagcataaattctatctacgctgtcttctctaaacatttgctcaatatgaatcaatgcatatagctaattaagcactttgttttgcatcaacataccgatccactacacttctaaggctggtttcttaggtgagggttgggaaccctcacatttgacacagaaaacggagcaatggatgaatgcgtgattaattaataattagcttaaaaaaacttcaaaaatgaattaatatgattttttaaagcaatctttttaaaaaacttttgcaaaacacacaccgtttagcaatttgaaaagcgtgcgcgtggtaaacgagagagtgaggttgggaacatggacataagaaaagattgtgaaaaggctctgctccgaaaaaaatagatgaagcactaatgcttgttgtcgcaggcaatttttcctatggctgatttctctgtaatttccctatacctcccatgcatccaatatatacaactagagaagcaagagaccgagtagatctattaacaccctaaatgccaccagatgaaatcaccctcggcagtgttcaaataagcaacaaagcaagcaactgtcattatacacaagcaagcttaaatctccgacgatagccgtcgatagcagtgtaaggacaatgtaccaggatgttttgtggttatggtgggacatcccgcaggaggttgtcacttagatgcggatgcatcacctttgccggaggcgtatgggaaaagtaggatgagtggagatcttgcagggaatggcggcgttggcagagcaagtggacaaccggggtggagctcgtggatctagcgggtaaccatggtggtgctggttatttcggatagaatactactcctagacttaaatcactgaaccactctggtcgatttattatgtctaaatgatttttgcatgcagcttcttttgaaatacagctataagttaaaaatcttttcgtatgcgaatgacttagcaaccaaccgtggaaacactttatagaggcagatgcgcaccgctggttgcatgcattggtgggcttgcttgtccataaatatttagaaatatttgcgtaggtggacaacctaattatgcaggctccatgtgcatgtaattctaagataaaaatgaatttcatagagaattcacatggattctgattaaggtaaaaaaacttatctatgtggtacttactacatgtgcttcattttggttaggtatctttatccttaaaatactttcattacaagggtcactctctattgttaccatgcgtaccatgtgaccttagcttgctagatatcatgacatttgtgagaatacatagtattaaatttattagttgaaggagttattgacctaaccaaattgaaggaattatagtaagggtcactctggaattttgttaatcacaatcggccttcgtacaaaatttctataaacttttgaataaaaagtaaaaccagttgagaccacatgtcattgagaagactaatttctatgcgtccacttgtaaactactctagataccatattataagagattagattcagcatatattaatttgggttaaatatttagttttaacatatactccttccatcccaaactataagacgtgcaacaaccactaatgcaaaggccaaaaaagaattactatctcctactcattttcatcacagcaataaatacaataagtacacccgatgggattaaatcttgagggtgaaggattttaaaaacgacggatttagaagagtgggtgtgctagttaattgcttgcatgcatgcctgcacgcacgccatgtattttgaaacattgaaaaaatatatatagttgtacttatattttattaggatggagggaattattacttgcaacaaaagatttaacatatattttaatttgaacgaaagatttactagcatataaaacatggcaatatattaaaaatcaaaactttatccctaaattacatactgcctgggccggtctggtgtcatggccctagcagctggcccatccaggagtacgtgctaggaggcggggccatgggccgtggctttacgtcttcctccgcttgtgccggcggcccctcccagctggtcggtggcctccacctcgtcttgcagctccacagcctctcactctggccccccacctactgtgcctcagttgccctggccggccacactctggcacctcgccttcacaccgtgaccaggacctcgtcctcgggctccacatccatgccgtccataggccatgtacaacgctccactctgacctgtggtctcacggctcccacgtcagagctgagcccacgtcagagccgagccgagctcgtagccgaacgaggttccacaggccggaagcgcgcttgcagagggaacgcttgaagcgccgcacctaggctcgggagccgctaagccacgactcgaagactagcattggaggagtcggagccccacgtatcgcttcgtccggtcggtccccgcgtgcacctgccccaaatccccatctcgctgtggttgtcgtcgccactcaccgccgccattgtggtcgcgtcgctgctcaccagatccgccgccagatccggtgagctcatggtcggagaagcaccgtcgccgacgcttgcgaagaacggagggggagaggaactgccgtcgtcgttgtggtctcgtcgccgctcgccggcaaatccgctgctgttgtggcttgtgtcgccagatccagcgagcacgaggctgtatccgcgctgcccaactctctctcgttgtcggagagctcgagctcgagcgccgccgatcccgtcgccctctgctcacctagagagaaggaaaggggagatggggatctcgcggcggcgtgagggacaaggagggaataggtctcaccggcgagctcacggggtaggggaggggtctggtcggcaaggtggactaggagaagaaggagagcgccggtttctttggagaagaagaatacgagaatgctcagcagagagagggagagagaataaaatagatggtttctatggagaagacgagaaggctcgggagagagaataaaaaagagagggggagaggctgacagtgggtccatatggtgtttaggggtgcatatatacttcttttaattgttataaggaccaaaatataaagttttaataggttttataataagatacactatcagagctgacatataaatagatagtggctgaatgcaaaatacgttttggagtggtttccgctgtgagtagtgtgacctttgtgtggttctatcctatgtggcgtcttgagatcactggtgcctgcagtggtctccattgtgcatgcccttaggcccatcttcctccacactcacctcgccctcccttgtcctcatcatcatcgtcgtttcattgctgtcgtttatgtattaagagtaaaaaaaatcaatgaaacaaagaaatagttcaatgctcaagattgattttttagctcttacttacctgaggtaagatggagcattgtgagctcgtagtatgaagatagacagagaacctacgcctacaaaacatagttagcttttttaaaagaaaataagcaagatgattacatcctaacctctctatttagaataaacccaaccataaagttttatttacataaatagcctcgaataagggtcaagacctcctatgagattaaataagaaagcatacatataacaatattgtatacaaaaagatagtaatgttttactgaaaaaatggcatcatgctttgtacagcaggtttaggctgtatgttcaggcgcgtattgtgcaagtttaggtggtaatggataaaaaagatttctggtgattagtaaattattaattacaaaaaccatcattccaggacatgtttggggctggcacggatacgtcgtctacaacactgatttggaccatggcagagctcatgcgctccccaagagtaatggcaaaggtgcaggctgagatgcggcaagccttccaagggaaaaacaccataactgaagatgatcttgcccaactaagctatctaaagatggtattaaaggaatcgtttcgattacattgcccagtgccgctattgtcccctcgcaagtgccgtgagacatgtaagatcatgggctatgatgtacccaaaggtacatctgtatttgtgaatgtgtgggcaatatgcagggatagtatgtattggaagaatgccgaggagttcaagccagagagatttgaagataatgatatagaacttaaagggagtaattttaagtttcttccatttggctctggtcgtagaatatgtcctgggataaatcttgggtgggccaacatggaatttgccttggctaatcttctctaccattttgattggaatctgcccgatggaatgttgcacaaagatcttgatatgcaggagtcgcccggtcttgttgctgctaaatgctctgacctaaatgtgtgtccagttactcacatttcttcgagctgtgcgtaaatgccagtgtaacacaatgcatcttcaaaaagatcagaacagcgcccatagtatatgtatgtactgccagatatatatatggggttggtatatatgtgtgctgttagatatggggtcttcgcgatttcaagataacttatgtacctgagcagaaaaaacatattgagcctacttatgtacgtacttatgctcttaataattgtactgccaatgaaataattaagtgtgtatcttgtacat</dnaseqindica>|
| + | ==References== |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001065728.1 RefSeq:Os07g0217600]|
| + | <references> |
| − | }}
| + | * <ref name="ref1"> |
| − | [[Category:Genes]] | + | Li W, Shao M, Yang J, Zhong W, Okada K, Yamane H, Qian G, Liu F. Oscyp71Z2 |
| − | [[Category:Japonica mRNA]]
| + | involves diterpenoid phytoalexin biosynthesis that contributes to bacterial |
| − | [[Category:Oryza Sativa Japonica Group]] | + | blight resistance in rice. Plant Sci. 2013 Jun;207:98-107. doi: |
| − | [[Category:Japonica Genes]]
| + | 10.1016/j.plantsci.2013.02.005. Epub 2013 Mar 7. PubMed PMID: 23602104. |
| − | [[Category:Japonica Chromosome 7]] | + | </ref> |
| − | [[Category:Chromosome 7]]
| + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]] |
