Difference between revisions of "Os04g0542800"
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| − | + | The rice ''Os04g0542800'' was reported as ''OsYSL16'' more than three times since the year 2012. As a memeber of ''YSL'' (yellow stripe 1-like) gene family, it can regulate the trasportation of copper and iron ions <ref name="ref1" /><ref name="ref2" /><ref name="ref3" /><ref name="ref4" />. | |
==Annotated Information== | ==Annotated Information== | ||
Revision as of 03:26, 30 August 2013
The rice Os04g0542800 was reported as OsYSL16 more than three times since the year 2012. As a memeber of YSL (yellow stripe 1-like) gene family, it can regulate the trasportation of copper and iron ions [1][2][3][4].
Contents
Annotated Information
Function
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Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os04g0542800 |
|---|---|
| Description |
Similar to Iron-phytosiderophore transporter protein yellow stripe 1 |
| Version |
NM_001059985.1 GI:115459699 GeneID:4336546 |
| Length |
3769 bp |
| Definition |
Oryza sativa Japonica Group Os04g0542800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:27582526..27586294 |
| Sequence Coding Region |
27582813..27583741,27583832..27583949,27584088..27584277,27584402..27584536,27584658..27584755 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:27582526..27586294 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:27582526..27586294 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggaccgccacgcgctgggcggcggtggcgcgctggagatcgagaagacgccggaggcggcggaggacatggagtcggagcccgcgctggcggcggcgcgcgaggcggagcgcgtcccgccgtggcgggagcaggtgaccgcccgcgggatggtggcggcgctgctgatcggcgtggtgtacacggtgatcgtgatgaagctgagcctcaccacggggctcatccccacgctcaacgtctccgccgcgctgctcgccttcctcgcgctccggggatggacgcacgcgctcgaccgcctcggcattgcctcccgccccttcacccgccaggagaacaccgtcatccagacctgcgccgtcgcctgctacaccatcggctacggcggtggattcgggtcgttcttgctggggctgaacaagaagacgtacgagctgtccggcgcgagcacgccggggaacgtgccggggagctacaaggagcccgggatcgggtggatgacggggttcctcctctccaccagcttcgtggggctcctcaccttgctccctctccgaaaggtgctggtcatcgactacaagctaacatatccaagtgggacagcgactgctgttctcataaacgggtttcacacgcctcaaggagataagaatgcgaaaaagcaagtccgtggattcctcaggtatttcggcatcagcttcttgtggagcttcttccagtggttctacaccggcggtgacgtctgcggattcctccagttccctacctttgggctgaaagcttggaaacatacatttttcttcgacttcagtctcacgtatgttggtgccgggatgatctgttctcaccttgtcaacctctctctcttgttcggcgcgatcctctcctggggaataatgtggccgctcatcggcaagcagaaggggaattggtactctgctaaggcatctgaaagtagcatgtcgggcctgttcggttacaagtccttcatctgcattgcacttctcgttggagatggcttctacaacttcgtcaaagtgatcgttgtcactctcaagagcgtacgcgaaagatcaaggcgcaggggtcttaacaacagagtggcggacgcggacaccatggcgatcgacgacatgcagcggaacgaggtgttcaaccgggacaacatcccgacctggatggcgtacaccgggtacacgctgctcagcgtcatcgccgtggtcctcatcccggtgatgttccggcaggtgaagtggtactacgtgatcatcgcgtacctgctggcgccggcgctggggttctgcaacgcctacggcacggggctcaccgacatgaacatggggtacaactacggcaagatcgcgctcttcatcttcgcggcgtgggccgggaaggacgacggcgtggtggccgggctcgtcgggtgcgggctggtgaagcagctggtgctcatctccgccgacctgatgcacgacttcaagacgggccacctgacgctgacctcgccgcggtcgatgctggtcgggcaggtggtgggcacgctgatggggtgcgtcgtcgcgccgctcaccttcttcctcttctacaaggcgttcgacgtcggcgaccccaacgggtactggaaggcgccgtacgcgctcatctaccggaacatggccatcatcggcgtggaggggttctcggcgctgccgaggcactgcctgcagctgtgcgcggggttcttcgcgttcgcggtgctcgccaacctggcgcgggacttcctgccgcgcaggtacgggcggtacatgccgctgcccatggccatggccgtgccgttcctcgtcggcgccagcttcgccatcgacatgtgcgccggcagcctcgtggtgttcctctggcacaggttcgacggcaagagggccgcgctgctcgtgccggccgtcgcgtccggcctcatctgcggcgacgggatttggacgttcccttcgtcgctgctcgcgctggccaaggtcaagccacccatctgcatgaagttcataccgggaaactag</cdnaseq> |
| Protein Sequence |
<aaseq>MDRHALGGGGALEIEKTPEAAEDMESEPALAAAREAERVPPWRE QVTARGMVAALLIGVVYTVIVMKLSLTTGLIPTLNVSAALLAFLALRGWTHALDRLGI ASRPFTRQENTVIQTCAVACYTIGYGGGFGSFLLGLNKKTYELSGASTPGNVPGSYKE PGIGWMTGFLLSTSFVGLLTLLPLRKVLVIDYKLTYPSGTATAVLINGFHTPQGDKNA KKQVRGFLRYFGISFLWSFFQWFYTGGDVCGFLQFPTFGLKAWKHTFFFDFSLTYVGA GMICSHLVNLSLLFGAILSWGIMWPLIGKQKGNWYSAKASESSMSGLFGYKSFICIAL LVGDGFYNFVKVIVVTLKSVRERSRRRGLNNRVADADTMAIDDMQRNEVFNRDNIPTW MAYTGYTLLSVIAVVLIPVMFRQVKWYYVIIAYLLAPALGFCNAYGTGLTDMNMGYNY GKIALFIFAAWAGKDDGVVAGLVGCGLVKQLVLISADLMHDFKTGHLTLTSPRSMLVG QVVGTLMGCVVAPLTFFLFYKAFDVGDPNGYWKAPYALIYRNMAIIGVEGFSALPRHC LQLCAGFFAFAVLANLARDFLPRRYGRYMPLPMAMAVPFLVGASFAIDMCAGSLVVFL WHRFDGKRAALLVPAVASGLICGDGIWTFPSSLLALAKVKPPICMKFIPGN</aaseq> |
| Gene Sequence |
<dnaseqindica>2554..3482#2346..2463#2018..2207#1759..1893#1540..1637#968..1140#491..875#gtggtggcgttcgtctgatcgtcgtctccgagcggtgctgctgttttcgcagggaggacagtacaggtgagaggtttctgcatgcggtgctcgttacaatttggtgttggattgtgcttttgctgcctttctggtttctgctcgtgatttgtggttcttttgttcgtcgccttgttggcctctgtcattactgacccccgtggagcagagtggcagatggccaaatgcctctggctttgctagaagccaattttataactaatcctgcccgtttcaattcaacggcgcttgtactcttctgtctaatgcaagggcgctgggcgcacatggatgggttgttggattgtgtcgccctggtacgcgtaaacaaatgtgctcacgattacatctctcccctgcagccgccgcggccaccggtgccgccgccgacgtctcggagctcgagctgctagtccccagggggggcgcctcgtcgggtgcggccggcagcatggaccgccacgcgctgggcggcggtggcgcgctggagatcgagaagacgccggaggcggcggaggacatggagtcggagcccgcgctggcggcggcgcgcgaggcggagcgcgtcccgccgtggcgggagcaggtgaccgcccgcgggatggtggcggcgctgctgatcggcgtggtgtacacggtgatcgtgatgaagctgagcctcaccacggggctcatccccacgctcaacgtctccgccgcgctgctcgccttcctcgcgctccggggatggacgcacgcgctcgaccgcctcggcattgcctcccgccccttcacccgccaggagaacaccgtcatccagacctgcgccgtcgcctgctacaccatcggctacggcggtagctctcctgtctcccctcccctctcatcaccccggccaatcttggcgtctcgttgcgctaaccgcgtcgcgcgttcgcgtggagcacaggtggattcgggtcgttcttgctggggctgaacaagaagacgtacgagctgtccggcgcgagcacgccggggaacgtgccggggagctacaaggagcccgggatcgggtggatgacggggttcctcctctccaccagcttcgtggggctcctcaccttgctccctctccgaaaggtacactactgactccctttgctcttctttgattttcccctttccatgccgtacctttcagcgtttaccgtttctgacagattccctgaattttccgagattgatctttactgtcatacgttctgaaaaaaatggcattggttgtacgatcgttcagcatcagagttgcaatcgttgaccacgattaacaaacattaaccatcgttttctccttttctcacttattaaggacctgttgtgtctttcagttatggtttggagtgctacagtacactactgataaagtctattctacacgtttattgtgtccttcagtctttttttttctgaacaaaaagtgggctaattatcgcaatcatgcaaaaatgaaggaatctgataaaaaccgatattttgcaggtgctggtcatcgactacaagctaacatatccaagtgggacagcgactgctgttctcataaacgggtttcacacgcctcaaggagataagaatgcgaagtaagctctttatttcagatttcagccaagtgctgatgaaatcatgattgagccgaccaaaaacgctgcagaaatagttgggattcactgacttgattcaatggtttcccctcaatgccagaaagcaagtccgtggattcctcaggtatttcggcatcagcttcttgtggagcttcttccagtggttctacaccggcggtgacgtctgcggattcctccagttccctacctttgggctgaaagcttggaaacatacgtaatttttttactgtttccatacaatttttatttactgtttctttttcactgatcattgtatgcttcagtggtaaagccgcaacaaaaacaactttttgctgagtaatttcttccatcaccagatttttcttcgacttcagtctcacgtatgttggtgccgggatgatctgttctcaccttgtcaacctctctctcttgttcggcgcgatcctctcctggggaataatgtggccgctcatcggcaagcagaaggggaattggtactctgctaaggcatctgaaagtagcatgtcgggcctgttcggttacaaggtgtgttcatcagttcacctgtcccaataatggtacatttgtagtactactagactagttcaggcagcacaatatatacacatttcctagctttttttttttttgaaaaaaaaaaactcaacatcgctacctgtgcagtccttcatctgcattgcacttctcgttggagatggcttctacaacttcgtcaaagtgatcgttgtcactctcaagagcgtacgcgaaagatcaaggcgcaggggtcttaacaacagaggtaaatgcaccgtaaaaaaagatttagatcgcctcgcgtattttcagttcaggctgaagcttacaggagtagttcattacgcatttgcagtggcggacgcggacaccatggcgatcgacgacatgcagcggaacgaggtgttcaaccgggacaacatcccgacctggatggcgtacaccgggtacacgctgctcagcgtcatcgccgtggtcctcatcccggtgatgttccggcaggtgaagtggtactacgtgatcatcgcgtacctgctggcgccggcgctggggttctgcaacgcctacggcacggggctcaccgacatgaacatggggtacaactacggcaagatcgcgctcttcatcttcgcggcgtgggccgggaaggacgacggcgtggtggccgggctcgtcgggtgcgggctggtgaagcagctggtgctcatctccgccgacctgatgcacgacttcaagacgggccacctgacgctgacctcgccgcggtcgatgctggtcgggcaggtggtgggcacgctgatggggtgcgtcgtcgcgccgctcaccttcttcctcttctacaaggcgttcgacgtcggcgaccccaacgggtactggaaggcgccgtacgcgctcatctaccggaacatggccatcatcggcgtggaggggttctcggcgctgccgaggcactgcctgcagctgtgcgcggggttcttcgcgttcgcggtgctcgccaacctggcgcgggacttcctgccgcgcaggtacgggcggtacatgccgctgcccatggccatggccgtgccgttcctcgtcggcgccagcttcgccatcgacatgtgcgccggcagcctcgtggtgttcctctggcacaggttcgacggcaagagggccgcgctgctcgtgccggccgtcgcgtccggcctcatctgcggcgacgggatttggacgttcccttcgtcgctgctcgcgctggccaaggtcaagccacccatctgcatgaagttcataccgggaaactagccaatgcatcgctgtaatttacagcgtcaatgcagacgtatagatcgtaaaaaaagagatcgtatagacgtatagcgtcaatgcagaaacactagaaaagagatcgtgtatcgagcgttttggacttagatttaagatttaggcgcagcgagaggaagaacgggtgtagctatgacggataaatccccaaaagcagaaatgctgttcataggggttggggttctgtactgtgtatatcagttgagaagaaaattagatgaaaacacaacaattagttgtgcttattg</dnaseqindica> |
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