Difference between revisions of "Os06g0695800"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown. | |
===Expression=== | ===Expression=== | ||
Revision as of 10:33, 4 June 2014
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Contents
Annotated Information
Function
Aluminum (Al) toxicity is a major factor limiting crop production in acidic soil, but the molecular mechanisms of Al tolerance are poorly understood. The gene STAR1(for sensitive to Al rhizotoxicity1) is responsible for Al tolerance in rice. Proteins encoded by STAR1 form a complex that functions as a unique ATP binding cassette (ABC) transporter, which is required for detoxification of Al in rice. The results described that STAR1 is translated to NBD, respectively, and then functions as an ABC transporter protein complex. However, the function of most ABC transporters is still unknown.
Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os06g0695800 |
|---|---|
| Description |
ABC transporter related domain containing protein |
| Version |
NM_001064988.1 GI:115469707 GeneID:4341938 |
| Length |
3671 bp |
| Definition |
Oryza sativa Japonica Group Os06g0695800, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:29949363..29953033 |
| Sequence Coding Region |
29949652..29949902,29950000..29950188,29952135..29952479,29952576..29952831 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:29949363..29953033 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:29949363..29953033 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctga</cdnaseq> |
| Protein Sequence |
<aaseq>MRRLGLSLHHDTSPSFAALACNQRPPPNGTVHACSKSRPPQLEP GKVGKKPIKKTMRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEE GAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALN RLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKL TDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDP ISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEA KHPMARRFLELS</aaseq> |
| Gene Sequence |
<dnaseqindica>3132..3382#2846..3034#555..899#203..458#accaagttgccgatgtgcttatctggtcctggtgttttctggggtaagagctagcaaccgaatcttgtatttcccacacagatccacggcaactgtcagcaacattgctgcgagtacttgatactgtatcagtgtattgcatctattgttggtgatcactgtgtagatcgacaagggtccaaaccgaccacggcgataagccatgcgtcgtctgggactttcccttcaccacgacacgagtccaagcttcgctgcccttgcttgcaaccagcggccgccaccgaatggcaccgttcacgcgtgctccaaaagccgcccacctcagttggagccgggaaaagttggcaaaaagccaataaaaaagacgatgcgcattgcccggattcccacttcgatcccccctcaccttcgtcttcctctcgacctctccgctgtctctccgatgggctcagcttcaggtgagcgagtacacctcgtcgtctcttgtgcgtcagcttcgtgttccagtgtacgtgctgacgacatgtgcgtgtgatcaacgatcgaatttgaagagcatgatgtcagggagcacctgctggacgtggacggcgtcggggaagaaggggcggcggcggcggcggggccgaagatacgggtgcgggggctgacgcggcggtcggaggcgagaggcgaggagatcctgcggggcgtcgacctggacgtgccgcgcggggtggtcgtcggcgtcatcggccccagcggcagcggcaagtccacgctgctccgcgcgctcaaccgcctctgggagcccgcgccgggcgccgtgctcctcgacggcgtcgacatctgcggcatcgacgtcctcgcgctccgccggaaggtcggcatgctcttccagctccccgccatgttcgacggtaagtacgtacgcccgccgctgtccacacacactgcacatacgcacggtgatccgatcctggaagaaactgtacatggattccatgaatgcggtaccttttccaaatttaaatgttcttctctgcaaaaagatgcttttccttcaaaaataaacaagaacttgatttgagattaccaagatcctgtccaaaaaaaaaaacagtaacgagtaagttttagacgatcaacagacaactaggtttggcatttttcatatgaataattaactattcgccactcttacgattgattagcctagttgtgtcaataataagttataataagggggaaataatgataaaatgtaccaatgtcgcagtcaaaacctaacaaatgaaagccgagttatagcatttgataaacagataaaaccaagttgagcacttttttgccctcgtcttgtttcctagaaatgggtgataagtttttttctacctaagaaaccgcatcaattttcaacttgcagtgaacttttacactagaggacgggtacttttagttgaaagagtttttacgctaaggccaaatacatgagagcttttgctagttgtaacttcttctagactttatagctcccttaaatagttcagattctaacctaaattctgataattgatactcctcagtttgccagaatatttcaacctaggatgagacgactgtgaatctgaacattcgtatttctagtatgagattaaatccatcttagtttgttacattctgagacggaggtagtagatacaaaatatttttaaaaaatactagaaactagaagttgtgaaacttaacttttccaaattcttatctactcgctactcgtcaactgattattagaggcttaaacaaggtctaaagctagtgcaatgtacttgataaaatggatgcttaatttgtctaccaacgtaagtggaatcttgcttcaaatattttttttcttagaagatgtcactgcttgctaacgtcagttgagtgggacatgcatgtcaattggtacgcctctaccaacgtggcgatgagtaacctacagtaactagaatcttccaagctcgtggctgacgtttcaatgcgacagggggacttattctaagcaaaataacagagggcgttcaatatattatctagaaaaaaaaagtaaaaaacggtcaaatttcatatgattcatgacaaaaagaagttttaaaaagtcaaatttcataagactccgtgggattgtttaggggagcttaaattctaagaagcaacaggtaaggattcggctggtgagaatatgtagaaatttggaaaaacctagcttctgctctagtttattttttcattctacaactacaactcattttaatttgaagataaaaactattttgaaaagtatttttattgtgggagaaactacaactacccgaagctccctaaggttgtgtttgaaggtgcattttggaaacacttcctctatagcacacacaacaaaatgactcattagcacctaattaattaagtattaactaaagaaattgaataataaattaaagcaattttccaaagcaacctttccatagaatttttttttacaaaaaaacatatcgtttcgcagtttaggaaacgtgcacgtaaaaaagagagtaaaaattggaacagcttaaaaattgtagttaagaacacacccttaatatgccaggttttccaaagctataattttaattttttattccaagttaaaattgattcaacagatccgatctactctggcacactccatttccccattgagtcctatttttctcatttgaggcacatggctcaagtatatatccccccagatgcaaaagctcaatgcaccaaacacagatttgacaggagtatttgatatttctcatgcaaaaaaactgaagtggtctgacacttgtgccaggaaccgtggctgacaacgtgcgatacgggccacagctgcagggcaagaagctgacggacgccgaggtgcagagcctactgagcctcgccgacctggaccctgctctctgctccaagcccgcctccgagctctccgtcggccaggcgcagcgcgtcgcattggctcgcaccctcgccaacgatccggaggcatgttggattattcagccttttcgctgattgcaacgcgacgcatcttggtgtttcggattcaggatcggattctgatgttggagtgtgtgtgcaggtgcttctgctggatgagccgacgagcgcgttggatcccatctcgacgcagaacatcgaggaggcgatcgtgcggctgaagaagacgagggggctcaccacggtgatggtgtcgcacagcgtgaagcagatccagcggatcgccgacctggtctgcctcctcgtcgccggcgaggtcgtcgaggtgctcccgccgtcggagctgtccgaggccaagcaccccatggcacggcgcttcctcgagctcagctgaagactggcacgacgatctcctcctcctctgtatgacgcttcttccgtttgtgtgattcggatgtgtacctgtaatcttgagaagttgagattatgcctgtatactatgtcggaaattttgtggtgagatgatctcaaccctactggccataaaatgcattttggtaaatattcttttatctaaaccctagtggcctccgaggctccgacattgtatttttgcctgtaatattggtacactactaaaatgaaatttggtactccctccgtcccagattataagggatttt</dnaseqindica> |
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