Difference between revisions of "Os04g0129300"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os04g0129300| Description = YT521-B-like protein family protein| Version = NM_001058625.1 GI:115456979 GeneID:4334996| Length = 5252 bp| Defini...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os04g0129300|
 
GeneName = Os04g0129300|

Revision as of 19:48, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0129300

Description

YT521-B-like protein family protein

Version

NM_001058625.1 GI:115456979 GeneID:4334996

Length

5252 bp

Definition

Oryza sativa Japonica Group Os04g0129300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:1830182..1835433

Sequence Coding Region

1830694..1830826,1830945..1831018,1831421..1831831,1831964..1832914,1833551..1833763
,1834081..1834284,1835110..1835151

Expression

GEO Profiles:Os04g0129300

Genome Context

<gbrowseImage1> name=NC_008397:1830182..1835433 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:1830182..1835433 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaaggaaccttccgatccgcccatgtcagcgttatcgcacacagaaggtgattcttccggcttcacaagaaacaacgataggaatgatgatgcagttggtggggaagattcgacttcttcatatcagccatgtaacagtatgaaatgcaaagatggtacccaaattatgtctctcgcaaatgaggatgtatcaaacctggcatcggattgtcaagagccgccttcagaatccaaccatgctatttcccatgggtcaaatacagattctaaggaagaaatgtcatcgggaagtgggtatcgtaggcagcagtcttgcttttcttcatcaacctgttcttggagaagttcttctgaagtagaatcagtgtcaagtactccagacgggtcaggagatgtagttgggaacatgagcgtcagaagcaaaacctttgagcgaaggccagatcacattgcttcatatccttctgctagtcctgacataagaaggttgtatgcagcagaaggtaaagctgattttaccttagattatcattcagaagaacgctggtccagaagatccaatcaatctactgcctttcgaaccagcaatggtcaatctattgaacaccacagtgagatagttgacatacctagacaggccaattccatggatgagactacttcctcttcaagtcaatggagttttgacaattggggaccttcactgccaagagggatgcagtatggtgatgagatcccttctctgtctagtcagaactatggtgctagaatcccctcgctttcaagtagacaaagttatggtgatgagattccgtcactatctcgcaattgtaactacgcgagtagacaaagttatggtgatgagattccatcgctttcttctcgccattgtaactcgttctcaagtagacaaagttatggtgatgagattccatcactttctcgccattgtaacgcacgctcaagtagacaaaattacggtgatgagattccatcgctgtctaactctgactatcagtgctaccaagataggatacctttgcatcatcgtcaatggtgccatgatgctgaggcacatccacagctaaactacgggcgaggtgcttctcatggcaatcgttactcaagagacagttttgtcagtagtattgctactaatcagaggttcaagatgggcacaggcaaacatactgtcacaagatctgatcatcataggactattaagaacgataatgtatgcaaacattctgatgatacattggagcaagttcgtggtccccgtgcaaacaaattggaaaatgcaacaagatccaagatacaggaagatatcagaagtcctttggtccgtagggatcagtttaacagaccagactttatagttgagtatgaacaagccaagttctttatgataaagtcatatagtgaagatgatattcataaaggtatcaaatacaatgtttgggcaagtacaccacatgggaacaataagctggatgcagcttttcgtgaagctcagattttaattaaggaaaagggcaaaaagtgccctgtcttcctattcttttcggttaattccagtggccagtttgtaggattggctgagatattaggccctgttgatttcaagaagaccatggacttttggaaactagatagatggaatggctttttccctgtaacctggcacattataaaggacattccgaataggctcttcaaacatataactcttgaaaataatgacaacagaattgttactttcagcagggacactcaggagattggcctactccagggtctgaaaatgttgaaaattttcaaggattatgaccaggaaacgtcacttctggacgattttaatttttatgaagaaaaggaaagtgcacgatgtgccaaaaagggaataaatgcagagtcgacacatgaagctagactattgttttttggaacaggagctagacactctgatgacttcaaatcaatggaaaatttagaggcaagcatggagaatacaattttatattaa</cdnaseq>

Protein Sequence

<aaseq>MKEPSDPPMSALSHTEGDSSGFTRNNDRNDDAVGGEDSTSSYQP CNSMKCKDGTQIMSLANEDVSNLASDCQEPPSESNHAISHGSNTDSKEEMSSGSGYRR QQSCFSSSTCSWRSSSEVESVSSTPDGSGDVVGNMSVRSKTFERRPDHIASYPSASPD IRRLYAAEGKADFTLDYHSEERWSRRSNQSTAFRTSNGQSIEHHSEIVDIPRQANSMD ETTSSSSQWSFDNWGPSLPRGMQYGDEIPSLSSQNYGARIPSLSSRQSYGDEIPSLSR NCNYASRQSYGDEIPSLSSRHCNSFSSRQSYGDEIPSLSRHCNARSSRQNYGDEIPSL SNSDYQCYQDRIPLHHRQWCHDAEAHPQLNYGRGASHGNRYSRDSFVSSIATNQRFKM GTGKHTVTRSDHHRTIKNDNVCKHSDDTLEQVRGPRANKLENATRSKIQEDIRSPLVR RDQFNRPDFIVEYEQAKFFMIKSYSEDDIHKGIKYNVWASTPHGNNKLDAAFREAQIL IKEKGKKCPVFLFFSVNSSGQFVGLAEILGPVDFKKTMDFWKLDRWNGFFPVTWHIIK DIPNRLFKHITLENNDNRIVTFSRDTQEIGLLQGLKMLKIFKDYDQETSLLDDFNFYE EKESARCAKKGINAESTHEARLLFFGTGARHSDDFKSMENLEASMENTILY</aaseq>

Gene Sequence

<dnaseqindica>513..645#764..837#1240..1650#1783..2733#3370..3582#3900..4103#4929..4970#aaagagaagaaaactagcccagacccctcctcacaccaggcgactccccgtcgccgccgccgcatcgccgcctccgcatcgccgccgtctcggagcgtctcctcagcaacccaccgttgaggctccaggtaggtatggccccggttcaattcttgtgcacgtattttgcccaaatccatcgttcagtccaagatttgagatagcactgtcgccatagcaggttcttggctgggaataatcgagccccttcatctgtagaagcagtagttacattgcaaaatcacactaaacgtattagggtattcggcttaattaatactactacccagtgaactttggtttgtctgctcatggggaacatctaaaatcaaacgaattttgtcttcatgtcacttgtcccatatttacaaccttaataatggattggattgctcagttttaaggtttttttatttaaccgcgcacaaattcctgctttcgccgctgtttattaacatgtttttacttggcagatgaaggaaccttccgatccgcccatgtcagcgttatcgcacacagaaggtgattcttccggcttcacaagaaacaacgataggaatgatgatgcagttggtggggaagattcgacttcttcatatcagccatgtatgtgccatcgtaattagtttccaaaactttttgatagtaataatttctgaatagctcagacagtcaatttgtgttctacttctactctgtggacaatttctttctcattctgcaggtaacagtatgaaatgcaaagatggtacccaaattatgtctctcgcaaatgaggatgtatcaaacctggcatcggtttgttctttgattactcatcctctttttatacaacacaatctcttcaattaatctgctatcggtgaccagattacctgaagtgttatatatctttctaaactataaatactttggagcagttaagtaaagaaactaataggacccaagagatgttgtactaatggcgcgattggtttataaataaatctgtagttagatttctggttgtaccatcactccatcagaaataggatcatgtgtacttgactaagatagcacagcgaacaaaatcgttgttcagtaattatgtgctaagacaagtatgagttaattcaaacattaaatctgtggatagcatgccctagatccaaacatagcaattttgtttaacaacatacaaacaactcttccctttctcaggattgtcaagagccgccttcagaatccaaccatgctatttcccatgggtcaaatacagattctaaggaagaaatgtcatcgggaagtgggtatcgtaggcagcagtcttgcttttcttcatcaacctgttcttggagaagttcttctgaagtagaatcagtgtcaagtactccagacgggtcaggagatgtagttgggaacatgagcgtcagaagcaaaacctttgagcgaaggccagatcacattgcttcatatccttctgctagtcctgacataagaaggttgtatgcagcagaaggtaaagctgattttaccttagattatcattcagaagaacgctggtccagaagatccaatcaatctactgcctttcgaaccagcaatggtcaatctattgaacaccacagtgaggtatggttgtggatccctttgactacacaataaattttgtctatatatacagtttctgtatttggcatgtctattaaacgattaaagactgtatatgggtgtttactaattttagttttatcatcaaaacagatagttgacatacctagacaggccaattccatggatgagactacttcctcttcaagtcaatggagttttgacaattggggaccttcactgccaagagggatgcagtatggtgatgagatcccttctctgtctagtcagaactatggtgctagaatcccctcgctttcaagtagacaaagttatggtgatgagattccgtcactatctcgcaattgtaactacgcgagtagacaaagttatggtgatgagattccatcgctttcttctcgccattgtaactcgttctcaagtagacaaagttatggtgatgagattccatcactttctcgccattgtaacgcacgctcaagtagacaaaattacggtgatgagattccatcgctgtctaactctgactatcagtgctaccaagataggatacctttgcatcatcgtcaatggtgccatgatgctgaggcacatccacagctaaactacgggcgaggtgcttctcatggcaatcgttactcaagagacagttttgtcagtagtattgctactaatcagaggttcaagatgggcacaggcaaacatactgtcacaagatctgatcatcataggactattaagaacgataatgtatgcaaacattctgatgatacattggagcaagttcgtggtccccgtgcaaacaaattggaaaatgcaacaagatccaagatacaggaagatatcagaagtcctttggtccgtagggatcagtttaacagaccagactttatagttgagtatgaacaagccaagttctttatgataaagtcatatagtgaagatgatattcataaaggtatcaaatacaatgtttgggcaagtacaccacatgggaacaataagctggatgcagcttttcgtgaagctcagattttaattaaggaaaagggcaaaaagtgccctgtcttcctattcttttcggttagtgatcaaattctattcttgttatatggccctttattttcatggtttagtattttaagcccttaagggcatgtgtcctcattttcttgcatgtaatccaaatggttatgaaacaattatgacagcatagttacatagatagtgtaatctatcactctacaacctacacgtggaaaaaaaaaatacattacatacaagaaacaagagcacgtgctggtacgcttaaaacccatctccaataatggatgtttgagcaaaatagttgacataacggcaagtttctattatgagattgaactgctgtttactagcacgtttttgacttttctgtctttctaaatatttgttttctttattagtatattcgttgggttgattatttcatctgtatcgtgtgatctccttaaaaggcaattttacttgaaattacattgcagatacatctgccattaaattttgtgatgaatttctccagaagagagagacttaatccaccacatatactttgtgctgctgaaagtttgaattacacaccttttgcgctggatggtactatggctattttatatcatgcatcccttcatcccctggcaaaatttcaagatagttgcttctttgtgttccctatttcaggttaattccagtggccagtttgtaggattggctgagatattaggccctgttgatttcaagaagaccatggacttttggaaactagatagatggaatggctttttccctgtaacctggcacattataaaggacattccgaataggctcttcaaacatataactcttgaaaataatgacaacagaattgttactttcagcagggacactcaggaggtaccatgcatccacttctttgttttttcgtgctgaaaaattccatcacgtatggttgttttatttagaaaatggatggtttcccctattttggtacatagcacatcacttcaagataagtttattctgtaataaattccatggtagcaggtgtactgagattcctcctgtgaacaaaggcggtgctatctgataatgaatgctatatctcacatcatttatccgtgctctctttaatatgttttcatatgacttaattttgtaatttcttagtttctaaacctttttgatctgatatcctttttcacgttatgtagattggcctactccagggtctgaaaatgttgaaaattttcaaggattatgaccaggaaacgtcacttctggacgattttaatttttatgaagaaaaggaaagtgcacgatgtgccaaaaagggaataaatgcagagtcgacacatgaagctagactattgttttttggaacaggagctagacactctgatgacttcaaatcaatggtatgtgcatttttatttaaagctgtgtgatatcaactaaggttccgtttgacattgaggtggattatgataattttatttagtgtgactgcttctagtagttttggcatttggtagactgttttttcttttaatttaagtagcagaagcaattgtgggagacatgacagttgcttaacatattttctctaactttacattgatttgtaagacgactacaatgactataaatgtacatctctacagcaacttaaaaaccaagcacaattagcatggcatagcatagcaaccataaactgagcctaagtaatatcttttaataatcgcggcatgtaaagaggacagtcaatcttattgtgtagctgcttctgatggaaattttcctggttcccgagtgtgtctgttttggtctatatgtccaaattcgagctgttttctacgcagtcatcggaatacatgagtttgtgatagctcagtattcagaaaaccaaacaaattacagatgatacaaaaagaaggcaaaaacctaagaggataagtctggcactcggttacggcacaagttcacggttatcaccgagtttcaataaccactcttgaaaataattaaaaatatagaaagcagactaaaaaatggcatgcttgatttttttttctatttttctggggaatccccagttatgacacaaggtgcagggcttggctcagtaatgcaaacatgaacaccgatagtgtgtagctgctgttattatattgaccttttttttggagagctgtgcatcattatattgacatatttctgatgatgtttattttcatttgtaggaaaatttagaggcaagcatggagaatacaattttatattaatccagatcgttatgccgtgcaattgaaataagaagcttgattggtcagtgaagaagttgtagtcttggcacttgcaaaaccatttttggtccagcaaggaaaggcaagattaattgggtgtttgtatagtgcatatgttccctaaagtatttaactggttgcaaacttacatggactagtttatctgtattattaagttgtactacttgattacttgtaagtggttgatggtttcttcctttcttttgttgccaataacgattaatcagctggttgtttgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0129300, RefSeq:Os04g0129300