Difference between revisions of "Os04g0485200"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os04g0485200| Description = UBX domain containing protein| Version = NM_001059666.1 GI:115459061 GeneID:4336208| Length = 4130 bp| Definition =...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os04g0485200|
 
GeneName = Os04g0485200|

Revision as of 19:54, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0485200

Description

UBX domain containing protein

Version

NM_001059666.1 GI:115459061 GeneID:4336208

Length

4130 bp

Definition

Oryza sativa Japonica Group Os04g0485200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:24651878..24656007

Sequence Coding Region

24651878..24652072,24653101..24653209,24653310..24653378,24653498..24653571,24653670..24653799
,24654579..24654683,24654788..24654998,24655640..24655643

Expression

GEO Profiles:Os04g0485200

Genome Context

<gbrowseImage1> name=NC_008397:24651878..24656007 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:24651878..24656007 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggcagagcacccgcaccagatcacatacaccaccaccaccaccacctccacctcatccctctgcccgcgccgcaggaagagaggagacgacgaggcggcgcaccacctcgtgttccccatggatctcgactcggccgcggcggcggctgcggcggcggcgcaccaccagcagcagcagcagcagaccacgtcccaggacaagctgaaagcattggcttatgagtacggtcatgagttccgagtattttcaagtgtaacatttgagtcaatgactagcaacttgcccgcagcagatcaggaggaagatgatgacttttatgagcttcagcctgctgactatttcaacttggtttcgaacagaataggagaacaatcgaaagttttgaagactcgtaaaatgcgtgaagcagaacttgctgcccaacgagcaaagataaaaaaggcagtaatgagggtgcgattccctgatggatacatacttgaggccgattttcatccgtcagaaacagttcaaagtctgatggattttctgaagaaagtaatctctagaccagacctgccattctatctctatacagttccaccaaagaagcggataaaagacacttcactggatttctacacaattggttttgttcctggggctaatgtctacttctcttatgatctgccggaaggctcagagttaaatacagacagtgtaaaatcaggaccttatctccgtgaagaaattcggatgttggatggactaccaattgtccaagaacctgtgcaccaaccaattgattctactatgaactcttcttctgctcatcaatctgatgtgtctcaatcagattttgcaccgccagcaaacaagaaaccagctaaaccaaagtggttcaaaaggtga</cdnaseq>

Protein Sequence

<aaseq>MEAEHPHQITYTTTTTTSTSSLCPRRRKRGDDEAAHHLVFPMDL DSAAAAAAAAAHHQQQQQQTTSQDKLKALAYEYGHEFRVFSSVTFESMTSNLPAADQE EDDDFYELQPADYFNLVSNRIGEQSKVLKTRKMREAELAAQRAKIKKAVMRVRFPDGY ILEADFHPSETVQSLMDFLKKVISRPDLPFYLYTVPPKKRIKDTSLDFYTIGFVPGAN VYFSYDLPEGSELNTDSVKSGPYLREEIRMLDGLPIVQEPVHQPIDSTMNSSSAHQSD VSQSDFAPPANKKPAKPKWFKR</aaseq>

Gene Sequence

<dnaseqindica>1..195#1224..1332#1433..1501#1621..1694#1793..1922#2702..2806#2911..3121#3763..3766#atggaggcagagcacccgcaccagatcacatacaccaccaccaccaccacctccacctcatccctctgcccgcgccgcaggaagagaggagacgacgaggcggcgcaccacctcgtgttccccatggatctcgactcggccgcggcggcggctgcggcggcggcgcaccaccagcagcagcagcagcagaccacggttcgtccgtctctttccccgtctccccccttttcttgcgtttcttggatgaaattaatctgctgcttcatcgctggacatatgctctgcgagttcttgttctcgggtttgggggtgttggggggggggggatttcttgggaaggcttgtgtgcgaggatttgtgcctggggttcaggagaggaggaggaggcgcctctctggattctttgctttggtgggttagcgagggtttctgactttcttcgtggccgtggttggttggcgccgaatgcgtggtgcgagaattcttaggcggttcttgttgtgtgtgcgtggaaagagagattctttgcttgcgtgtgcagtgatcgggtgatttgggaggaatccatggttttctttgacctaggtgttaccgccatggattggatagaggatgttcccattataagctggaatcatgaggaatgaaccttcgtggggaaacactagtgcaatttagcttcccttttttctttgtcgtgagtagttccttgcaagtgtttctcagcgattgaaatgaaagattagcagttcagcccttgcgtagttagcattgttagcattttagataaatgctggctgtgtctgtgtggacatcaatggccaggagatgtttggttgccattatcagcttcatctacacaaagttatttcttttgttgcgatatcttgttcatccttcgtacggttggcagagaaacagtactgtatctcgggaaaggtttggagggatgctgtcaggagttctgcaaagtagcgtaatagcttaaaactacatggcattcacttgttcttggcagcacttgtacttggttctgtttttcctgttgagagatgttcgattattggcaatttcatctcatacccatgtgcatttgataacctcctaatagatatttgtggcttcatcataaacaaaacaataattatagcaattcttgcttcacatgaacctttttgcaaaaaattacattgaagtctaacagatgcattttctgtcaatagtcccaggacaagctgaaagcattggcttatgagtacggtcatgagttccgagtattttcaagtgtaacatttgagtcaatgactagcaacttgcccgcagcagatcagggtacaatatatctcttgcttttatgagttccgaggttttctttacaaaaatctctctatctttatggttgtgctctgatgctaaaacatggttcatgcagaggaagatgatgacttttatgagcttcagcctgctgactatttcaacttggtttcgaacagaataggaggttaattatattgacacttactattgtttgggaactttagcatctgtgtagtactgtccaaattgtactacttttcttttttattgtagcactatctaaaacaatgaaactgactgcagaacaatcgaaagttttgaagactcgtaaaatgcgtgaagcagaacttgctgcccaacgagcaaagataaaaaaggtaagatataattcacactgctcttctctgtatttagtgtttctttctgaatctaatttggtataatatctatttttccacaaccttcttaactgtaggcagtaatgagggtgcgattccctgatggatacatacttgaggccgattttcatccgtcagaaacagttcaaagtctgatggattttctgaagaaagtaatctctagaccagacctgccattctatctctgtaagtccacttgcttgggagttactgatgtattagcttcaacagtagggtttcacctcctctttgcccccttaattacccacctttgtttatcctatcaacaacgatctcggcttacagttagtgtaatttcatctgtttcagtttacagttagctttggttttcataaagactaatgagaatacttgtatctatgataagaactatttatctgtttcatttgcaatcaaatatgttggcaatcatgatatcggaaataactaacctcccttaagtagttccatcattatagttacatgcgagtaaaatttaagtgcatccttttgtgtaaagggttttacaatcaaccaccttttacagagtaatacaagttaataagcaaaattgggtacaacattcagaacacctatttgatgagttcatatgacaacatgacagtagctcaaacaggacaagttttctcatcgtgttctcgttgcccaaacttggattagacactatctgttgttatgtcaaaggaatatcgtcagtcaccaagttgattctgtctggtgatagctttgacaaatgtttgagttaaaatatgccacatgtaacctgtatgtgaaaacatagctttaggtttaacttctacagttttttgggtaagcatcatattcatctgtcattctttgagcacagatcatttgagtgacatctccatagattctctgcattcatatcatagagatgtaccagttataatttcgtaatactccatcatttgattccactacagatacagttccaccaaagaagcggataaaagacacttcactggatttctacacaattggttttgttcctggggctaatgtctacttctcttatgatctgccggaaggtatgtttgtcctaaataagtaataactagtaccaggttttgttcctggggaactcattagacattcccattcgtttttgttttttttattgaatcacatgcaggctcagagttaaatacagacagtgtaaaatcaggaccttatctccgtgaagaaattcggatgttggatggactaccaattgtccaagaacctgtgcaccaaccaattgattctactatgaactcttcttctgctcatcaatctgatgtgtctcaatcagattttgcaccgccagcaaacaagaaaccagctaaaccaaagtggttcaaaaggtagactttcttttagtgacatactgttatgaaagagtgaattcattgctaagctatgctactacggtgctacttcttttttggttcaaatttatctgttttctcacttctcttggggagcaaaactaaattattgccctggcaataatttatacatatctgaattctctgtttaattagaataagaacctacatggagacacctgtgaacttatcgcttgctttagggtgctagaaggtaaatcatggtgatcttgcagcaatgaatttgctatttctccagcagtaacaaaaacccctcttcaagtagcatcgttgcatgagcaacaagcctaatttatatatgttgtctgaaccacctgtcgcagcttctaacatatcatcacttcaagatgcattaccatgttcatcatgaaattttgttgatttttcattttcactcttgaccaattgtacatatcaatgtatttatgtttaaaaaagtcagtttcagtttcaacctgtgcatgcattttgctgtataccactgaagttgttctttgtaacactgctgctttcttggacattactgctatagcaatctttgctgcaccgtgcattttacttgatagattcatcatttatgtatggatgccttgcaggtgatgatgaggtgagacagtcagggcgccaagaatgcaccaccagaggacgactctaatgtagggggatagagagtgaaagcatgacaataatgggttgctgttggctttcttgatggatggatacacattgtaaaatgaaactttccaaagaaatttcacgagtgctgcagaatgattttttgcgtctgatagcactgcattacactgtacactccgttgctaacaaagcctcccttttcctgagtgcatatggctgggggtgtttggttgattgcttcactttgtcacgccacacttcagtcatgccacagtttgtagatgtgtgtttgtttcaatgccacagttgtgtcatgccacacttttct</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0485200, RefSeq:Os04g0485200