Difference between revisions of "Os04g0490600"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os04g0490600| Description = Nucleotide-sugar transporter family protein| Version = NM_001059700.1 GI:115459129 GeneID:4336243| Length = 6162 bp|...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os04g0490600|
 
GeneName = Os04g0490600|

Revision as of 19:55, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0490600

Description

Nucleotide-sugar transporter family protein

Version

NM_001059700.1 GI:115459129 GeneID:4336243

Length

6162 bp

Definition

Oryza sativa Japonica Group Os04g0490600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:24913996..24920157

Sequence Coding Region

24915638..24915649,24915780..24915850,24916454..24916523,24916708..24916785,24916901..24917023
,24917547..24917606,24917733..24917777,24918245..24918322,24918607..24918663
,24918932..24919048,24919165..24919335

Expression

GEO Profiles:Os04g0490600

Genome Context

<gbrowseImage1> name=NC_008397:24913996..24920157 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:24913996..24920157 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagaggaacggagtgatggaatgcagtgtatgccactccaaggtggtggctccgagccccaggagtgtgtcgagggcatatgacaagcaccgcagcaagatatcgtccaagtaccgcgcgcttaacttccttcttgtgtcaggggactgcattttggttggcctccagcctattctagtatttatgtccaaggttgatgggaagtttcagttcagtcctatcagtgtcaactttttgacagaggttacaaaagttatatttgctattgtaatgctaataatccagtctagaaaacaaaaggttggggagaagccacttctgtcactttcaacctttgtacaggcagcacgtaataatgcactcttagctgttcctgctctcctatatgccatcaacaactacctaaagttcatcatgcagttatacttcagccctgcaactgtgaagatgctaagcaacctgaaggtactcgtcatagctatcctcctaaaattcataatgagaaggaaattctctataattcagtgggaagcccttgctctgttgcttattggaatcagtgtcaatcaactaagctccatacctgatggaaccaaatcttttggtcttgcagtcaccactattgcatacatatatacacttatatttgttactgtcccatcacttgcctcagtctacaatgagtatgctttgaaaagccagttcgacacaagcatctatcttcagaatttgtttctatatggttatggtgcaattttcaacttccttggcatcctggggactgtcatatttcaagggccacaatgtttctcatttgtaacaatgctgcacaaggcattctctcttcattcttctttaagtatgcagacacaattttga</cdnaseq>

Protein Sequence

<aaseq>MQRNGVMECSVCHSKVVAPSPRSVSRAYDKHRSKISSKYRALNF LLVSGDCILVGLQPILVFMSKVDGKFQFSPISVNFLTEVTKVIFAIVMLIIQSRKQKV GEKPLLSLSTFVQAARNNALLAVPALLYAINNYLKFIMQLYFSPATVKMLSNLKVLVI AILLKFIMRRKFSIIQWEALALLLIGISVNQLSSIPDGTKSFGLAVTTIAYIYTLIFV TVPSLASVYNEYALKSQFDTSIYLQNLFLYGYGAIFNFLGILGTVIFQGPQCFSFVTM LHKAFSLHSSLSMQTQF</aaseq>

Gene Sequence

<dnaseqindica>4509..4520#4308..4378#3635..3704#3373..3450#3135..3257#2552..2611#2381..2425#1836..1913#1495..1551#1110..1226#823..993#aaaagagaaagaaagaaacgtgaataaaatacacgcgaagcgcacgccccgccttcgccgtcctcctgctcctctccctcttccaccttcctcccgccggaacttgacgaaatctgggaagcgagccaaggaggagggggaggagaaccccgccgccaccgcccgatctccccgtgcggcgccgggcgggggggtgcggagcgggagcctcgaccgcgccgatccggacaggggccaccagattcgccccgcgcgtgtgccggcgccgagcgcccaggcggcgttagatcccgccgcccggcccccccaccctcccccgtggtacggtcgctgatacgaggtcctctcggatctctccgtcgttcaagctcacctgtgattgtgctacttttttttttggttgttgttgtgtgtggtgctgattgtgtgatctagtatatagaagcacgcgcttgctgcatttggtcgtgatttattttggatgtttattggcgaagttagcttctagtgatctgatatggattatctagctgattgggtgatttgaagtttagtgctggtatttgtagtttacttcggttgatgctgtcggctatgatgtgttttggtgagatgggctgggtagcggtgctacacatgaatttgcgagattatgtgaatttagagagaaatgtgttcagttttcatcgattagtttgcttagttcacaaatgtatttttttgctgcaggcatgcaaagggatcagaggccacggctatagagtgatacatatatcttgctgctgtgcttttggggcctccggtcctgcttagttagaggagatgcagaggaacggagtgatggaatgcagtgtatgccactccaaggtggtggctccgagccccaggagtgtgtcgagggcatatgacaagcaccgcagcaagatatcgtccaagtaccgcgcgcttaacttccttcttgtgtcaggggactgcattttggttggcctccaggtactccactctacttgaaagtgtttgacttcaatgccaatatgctgccaaattattggacatatctgattgccaaccttttcaaaccatgctaattttttactttgtatatgcagcctattctagtatttatgtccaaggttgatgggaagtttcagttcagtcctatcagtgtcaactttttgacagaggttacaaaagttatatttgctattgtaatgctaataatccaggttagttctagctgatccgtgctttctacaagtgtttttttttaaatgttccatctcttgttagcatgcatgatccttctatgtaatatcaatgttttgcacacataatttctggaatggctaatcaaagcatttgttttgcacacataattcaccattttcagtagaccaacagtgtagtcatggatttactattggcagccttcctggctcttgtagtcttgttgttttagtatttcgccctaatgttgttatttgtgtttgacagtctagaaaacaaaaggttggggagaagccacttctgtcactttcaacctttgtacaggtgatttatcttgtcaatgctagcacagcatgcactctttgttgactgtgctcaacatgcacacagattagatatatgacttatgtttatagtgttaaccacaaattgtttttgtctatttgtttttaattccttagaagaagctcatttgtagtttttattccttaatgacttgccttcagctttcctttatttatttataactttatgcatcaaattgctctaattccagctttctagttatggcaacttatcatttgattcttgaatccttctctttttaggcagcacgtaataatgcactcttagctgttcctgctctcctatatgccatcaacaactacctaaagttcatcatgcaggtaaatgttcattgaactttatgaaatcttgttttcctgcagtgtatcagtattttatgcttatgttaaatacatgtgtttcaagggaaatacaatgctgtgaaataatgctgaaaaggagtttatagcatatgatgataagctaatgttcaaaaagatataattattcagctactagtaaactatttagaaacttttagttaatatgaatgcaaaagagatggccttaagtgtttctcaaggcctcttgaactgtttaattgtcattgcaacttgtccaatcatttgagttagttaatatgaattttaatacttatcaatgtttccaagccattgcagtaggaatctatctaatgagagaccaatgatgttttaagatttttttctagagttcggatttggagtcttccaatctgatatagcttttggtcttggttttaatttaatctgctgtactgcacatgcagttatacttcagccctgcaactgtgaagatgctaagcaacctgaaggtaccctctttcgccatttttcccatgctttattcatgtggttttgcaagatgcgagtgtgtattttccctatgtttggcaagaagcaagatttactaatatcatattcttttattcctgatcaaggtactcgtcatagctatcctcctaaaattcataatgagaaggaaattctctataattcaggtgagactgagattagtattgtggtccttttattcctgaatcttccttgtggaaaaaaaaaacacaattagccattacatgttaaactgcacagtgcatgcagtctctataattcagctaagaatttctctcatttagatgttttttcctattaggctattggtttgttattgtgaatatagtgcatgcagtttccatgttttactactgctaggattttagaaatcaataggcaccattcgcctcttttctcaaggtttttgccttgccttttgctgactatatttttgaatttttcacaaactctgttagtaccaatgcagaatcgtaactagcaatgatggttgagtagttgacacttttagatgcagtgccaaattaattaaaaatggacttgaagtctagaatggtacaacaacttaaactgaatcaaatcctagggaaaatgtagagcaattatatgttcttcaaatgtttccaacaatgctgatctatgaccctgttctttttttatggctatcagtgggaagcccttgctctgttgcttattggaatcagtgtcaatcaactaagctccatacctgatggaaccaaatcttttggtcttgcagtcaccactattgcatacatatatacacttatatttgtaagttttactcacctacatagtatcttgatctgtgtagttttcactattttttcagccacctgaacaaattttgaatcgagatgttcatatttatgttcatttgagattgtaggttactgtcccatcacttgcctcagtctacaatgagtatgctttgaaaagccagttcgacacaagcatctatcttcaggtgatttgcactaaaaaagtttgccttacaactctttcaaattacttataacacacgcatataatactgaaaacaataaactgataagatctagtcccttggtttttgatgcttacctgttcacattttttttccttgacttctctctcccttcattcacactaactcttggcacaacatgcagaatttgtttctatatggttatggtgcaattttcaacttccttggcatcctggggactgtcatatttcaaggtaagcaacttagattctaaggtgatgaatatgctgttatgcattataatgtatttcagtatttgaaagtcaacatgtggggtgacttaggcctgatggaaaatggcatgcatgcaatattctcattagtatttcaggtgttgcaaacaacagatgtggtacccgaggactcttgtgtcttttgtgttgcaaagcaaaggaaattggatgtctgtttagagcttggtatatggttgaatatgtactttgaaatcagtgcgtcttttcatcctgcaaatttttatagcgctaccagtcagaaactgaaaatcatgcactgtagcatgttttgttattatatttaaagtaccgttcaagaggggaacccatatagcctatgcatgcatcacctcttccaagcagccagacgggcattactttgtatttcgtgtttaatactctgtgtctcacaaactgtcgagttggccaaatcttactaccttccattagtgtcgtaccgtgtcttatgttttgttttggactattggctatatgtctatgatataactttgccccattgtttgcagggccagagagttttgacatccttcgaggtcattcaagggccacaatgtttctcatttgtaacaatgctgcacaaggcattctctcttcattcttctttaagtatgcaggtaaaggatggtatacctgatttactctcttacacaatcttgagtttccaattctttgtttctgtgtttcagttacatgatgttatgatttcccatgctttagtaacaattgactaaaatcgtaatgcagacacaattttgaagaagtattcatcaaccgtggccacaatatttaccggtctagcatctgctgcatttttgggacataccttgacagttaactttctcctaggcatctcaatagtgtttatttcgatgcaccaggtgattttttattgtctattctttagcctactacttattgtgtcttagttgaacatatgtaagtggctaagtgctgttcttgttcagtttttctccccactggcaaaggtcaaagatgacaaaccagctggagcattagaaccggaagatgcacagaatcataggtaaacatcgcttgtcccttgcatttatacttcatattaatgacatttgaagtgaaagtgtcatgattttatgaaatatttcagaacatctaatctcataaaacaattttgtgtggcaggtcatccgactcttcttttgtaaatatgactgctggcgctgctgatgatgtaagtgactcattgttttgttgaataaaaccaagaatgacaactttatttctcatggacttatctcttgtgctgactatgttttcaggcaagccatcttactgcaaccgatgagagaaaaccattgttgcctatttagccttctgtttgaggtgaatctcacacacttttctcatggacaaatatgttgctgtgtcatttcagtgtttgttggatgaaaatgtcactttgttacaactgtaagctatctgtcagtgaaactgcattcgcaaggaactgcttacgatcagtttctgtattactgttagcgttagttacctcagattgaaattcaaaacatgggttgggtgggtgaggggtcacctattagaaagtttagactatgatggtaggaggtgattttatagacctggttgcggcaacctgcagctgccatcagtgagactgacagagacagttgatgatttggtgttatgtactattgtcagtagcttctcttttgcttagagtagagatggatgttagagcagatgcttgtgactttgaaggcaaggagtgcataatcagttgggtgtaacatagttggaatcagagttcatcttagttatatgactactactaagattggtactatctatcactactagtaagccagttcatggttgtaaaacaacaggtactctcatgggcatggaatagaagcccttagcaccaaagaaaactatttgagagcctaggcttacagcaacccaaaactacctattttttgttgcaaacaatttctattcctgtttgttggtattacaatcaacagctttgtaagacgttcattctcaatagctctgataaactcttccatttgattctgcaggtaggtatagaagaaattctttttgccatgaatcacacagaatttatgtagcatgatgagtaaaataaacagttgtaaactatagaatgaaacgaaatattcatagctccgtttcaggttatcctattttctcttctcttttttttaccccaacatttttggggcaaacattcggatggcaagacttccgaccctatacaaatacactcatactatacaaagttccctttgttcttttggcaaaatcgatgtatgttaacgggacacaattgtactgaacattcgtaccatttatactactgaactgtttttttcct</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0490600, RefSeq:Os04g0490600