Difference between revisions of "Os04g0498800"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os04g0498800| Description = Similar to Cell division control protein 48 homolog B (AtCDC48b)| Version = NM_001059750.1 GI:115459229 GeneID:433629...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os04g0498800|
 
GeneName = Os04g0498800|

Revision as of 19:55, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0498800

Description

Similar to Cell division control protein 48 homolog B (AtCDC48b)

Version

NM_001059750.1 GI:115459229 GeneID:4336296

Length

3789 bp

Definition

Oryza sativa Japonica Group Os04g0498800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:25330666..25334454

Sequence Coding Region

25330831..25331031,25331133..25331177,25331343..25331398,25331503..25331650,25331719..25331822
,25332009..25332108,25332272..25332556,25332627..25332796,25333155..25333283
,25333641..25333737,25333850..25333927,25334003..25334326

Expression

GEO Profiles:Os04g0498800

Genome Context

<gbrowseImage1> name=NC_008397:25330666..25334454 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:25330666..25334454 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaagaggttaggggcagggagagcaaagaccaccgcggcggcggcggcggcggcggaggtgatggggacggcgagcggacgggacggtggcgcgccgaggaggtcatcgctgggaaccgcgcggttctggaggctctccgggagctcgtgatgtatcctgtcctctacgcacgggaggcccgcgtgctcggcctcaattttcccagaggattgctgctccacggcccctctggcactggaaagaaaagcatggtccgagctgttgttcgagaatgtaatgcccacctcacagtgattgattcaatttctgtgcataaaccccacgctggagagggggagaagttcatgcgagaggcttttactgaagcatattcccaggcatcacagggtagaccagccgtgatattcattgatgaacttgatgacatatgtccaccgcgtggcagtaggagagagcaagggtcccgcattgttggtcagctgttgactctgatggacgggaagtcatcaaagctgcttccccacctagttgttgttgcatctgctaccagggtggatgctattgagtcagcactgcgaaggcctgggcgttttgactcagagatagaggttactgttcctacagcagaagaaaggttcgagattcttaagctttataccaagaatctacatcttggtgaatgtgttgatcttcaatctgttgctgcatcctgcaatggttatgttggagctgatttacaagctttatgtcgagaagctgcaagacgtgcttatggtagattatcaagctcatcagagagtgagaatgtgctaacgctaatcatggaggattgggagtctgctaaatctgtggccaaaaatagtgtgacaagaggggtaactaaagaaattccagctgtttcatgggatgatataggaggtttgaaagctgttaagaaaaaacttcagcaagctgttgaatggcccatcaagcatgctgcttcatttgatagacttggaatatcacctatccgtggggtgctattgcatggtccaccagggtgctcaaagactacccttgcaaaggctgctgctcatgctgcccaagcttctttcttttcattaagtggtgctgagttatactccaagtatgttggtgaaggtgaagctttgttgcgacgtacattccagatggcacgtcttgcttctccaagcattatattttttgatgaggctgatgcaattgcccctaaaagaactggtcccagcgggaactctagtggcaatgccacggttggagaaagactcttatcaactctattgacggaaatggatggtttagaactggctacgggaattattgtattggctgctactaatcgcccaaatgcaattgatgctgctcttctgcgcccagggcgtttcgatatggttttgtatgttccaccaccagatgcggaaggtcgatatgaaatactacgcatccatacacgcaaaatgccattaggagatgatgtggatctttggaaggtagcagagcgtaccgagcttttcacgggcgcagatcttgaaggcctgtgcagggaggcgggaatggctgccttgagggaaagtctgaggtcagagcgttttgtatgtgacgatattcacttccaggccgcgctaagatccttgcgtccatcacttacacaatcagtggttgatgagtactcaaatgcagccatccatggtccattgacgaggagaaaacactaa</cdnaseq>

Protein Sequence

<aaseq>MEEVRGRESKDHRGGGGGGGGDGDGERTGRWRAEEVIAGNRAVL EALRELVMYPVLYAREARVLGLNFPRGLLLHGPSGTGKKSMVRAVVRECNAHLTVIDS ISVHKPHAGEGEKFMREAFTEAYSQASQGRPAVIFIDELDDICPPRGSRREQGSRIVG QLLTLMDGKSSKLLPHLVVVASATRVDAIESALRRPGRFDSEIEVTVPTAEERFEILK LYTKNLHLGECVDLQSVAASCNGYVGADLQALCREAARRAYGRLSSSSESENVLTLIM EDWESAKSVAKNSVTRGVTKEIPAVSWDDIGGLKAVKKKLQQAVEWPIKHAASFDRLG ISPIRGVLLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSKYVGEGEALLRRTFQM ARLASPSIIFFDEADAIAPKRTGPSGNSSGNATVGERLLSTLLTEMDGLELATGIIVL AATNRPNAIDAALLRPGRFDMVLYVPPPDAEGRYEILRIHTRKMPLGDDVDLWKVAER TELFTGADLEGLCREAGMAALRESLRSERFVCDDIHFQAALRSLRPSLTQSVVDEYSN AAIHGPLTRRKH</aaseq>

Gene Sequence

<dnaseqindica>166..366#468..512#678..733#838..985#1054..1157#1344..1443#1607..1891#1962..2131#2490..2618#2976..3072#3185..3262#3338..3661#ggttaccgtctccctcccaaagccccgcctggtgattcgccgtctccctccgtcgccgtgccttcccccgccaccgtcctgctcaccggcgttccgccggaacgacttgaagtccacctctcgagctcggcggcctcccccttagggcagaagcggacgaggcgaatggaagaggttaggggcagggagagcaaagaccaccgcggcggcggcggcggcggcggaggtgatggggacggcgagcggacgggacggtggcgcgccgaggaggtcatcgctgggaaccgcgcggttctggaggctctccgggagctcgtgatgtatcctgtcctctacgcacgggaggcccgcgtgctcggcctcaatgtattgtcgcctatcccctcttctcttcgtccttattatcatcaagtgcacctgcttgtaaatagcaatccatttttgaaataatctttgcattggtgcagtttcccagaggattgctgctccacggcccctctggcactggaaaggtactgcttttacggtgttaatgtcttcaatccggtgcaatttatggccaatgcgtctgcttaggctaggttcatgtagagtttgcttttatcttgctgtggattttgctactggtatcgcaatttgtagtgctgaatgttttactgcttttgcaattctgtcagaaaagcatggtccgagctgttgttcgagaatgtaatgcccacctcacagtgattgagtaatgacttaactcgaattggttaaccttgaaagactctgctttgcttttaattgcatattttgatttggcacttaattcacataatgtacatatgtttacagttcaatttctgtgcataaaccccacgctggagagggggagaagttcatgcgagaggcttttactgaagcatattcccaggcatcacagggtagaccagccgtgatattcattgatgaacttgatgacatatgtccaccgcgtggcagtaggcaagtttgttatattacctacaaattttatatttgccaagaagttattattaatgtatttttcacaggagagagcaagggtcccgcattgttggtcagctgttgactctgatggacgggaagtcatcaaagctgcttccccacctagttgttgttgcatctgctaccaggtcaggaatgtcagttgcgtgatttgtgatcttagcaaatagcctaacattttaagttcattttaggaagttcctctgttgatacggcagcatattccactaagtgcgcttaagttttcctttagttattctggttatgaacttcgtgtttttctcttgaatgaaaacacaacttgctttcattagggtggatgctattgagtcagcactgcgaaggcctgggcgttttgactcagagatagaggttactgttcctacagcagaagaaaggttcgagattcttaaggtatcatataagaatgtagttttcccctcaaaaatagtaaaagaatgttgtattttatgatgtaacatagcaagccctgcattttttggatgtggttaacgtatgttcatgatgattttttcttatatgaagcttaatcttatagaccatattatgtttttagctttataccaagaatctacatcttggtgaatgtgttgatcttcaatctgttgctgcatcctgcaatggttatgttggagctgatttacaagctttatgtcgagaagctgcaagacgtgcttatggtagattatcaagctcatcagagagtgagaatgtgctaacgctaatcatggaggattgggagtctgctaaatctgtggccaaaaatagtgtgacaagaggggtaactaaagaaattccagctgtttcatgggatgatataggaggtttgaaagctgttaaggtaaaatatgcctcattttaggatttctttaatcaaacctcctttaatggttattgttgctatgcttcagaaaaaacttcagcaagctgttgaatggcccatcaagcatgctgcttcatttgatagacttggaatatcacctatccgtggggtgctattgcatggtccaccagggtgctcaaagactacccttgcaaaggctgctgctcatgctgcccaagcttctttcttttcattaaggtttgctgcgtaaaaattgttctctctttttctcatttcatccttccaacatgcaaaaagaagcctgtgaatcgcataatattttctgatgtgatgcttatattgtaataaattcaataaacatcacttaatctcagatgtactgaaaaggagttattagaggaagcaaaagaacttaacatgtttatttcatgtactgttaagaccaagctggcataatttgttcaaattctgctgcttgaatcgttgtcctgtacgctagtccaaataatatagctagaacatgctaaccggatcattttgagttcagtatacagtcttctatgttgttctaaatttcttacacattttcaaacagtggtgctgagttatactccaagtatgttggtgaaggtgaagctttgttgcgacgtacattccagatggcacgtcttgcttctccaagcattatattttttgatgaggctgatgcaattgcccctaaaaggtgcacatttatatcttgtctcttgttgtcctgtggcacatactagtgagatctatgatacatgatgcatgatattggtaaaaatgattctgtacaatcatcataagaatgtgcatgaattgttataggctatcttctataattacgtaataataatatttgcatcttttccatggtgtacatgattaggaagttgaagaggtgtcagaagtgttaagcatattttgttggatatggttccccaaatgttcttttcatatagtagaatcaatttatgaaaactttgcttctgcgcatgtaaatctaatttccacatctgaccagtgaatgttaatattggagtttgtaatcgttcagaactggtcccagcgggaactctagtggcaatgccacggttggagaaagactcttatcaactctattgacggaaatggatggtttagaactggctacggtacctcttacatatttagattgacgatggcattcaaatgtgactctccttgtcatatctcatatatgccctttctttgtactaaaaaagtatcttgcaatttttgatgtagggaattattgtattggctgctactaatcgcccaaatgcaattgatgctgctcttctgcgcccagggcgtttcgatatggtatcccgatctccctctccctctccctcacacatagcaaacaaaatcatgttctttttttcattttaactgcaggttttgtatgttccaccaccagatgcggaaggtcgatatgaaatactacgcatccatacacgcaaaatgccattaggagatgatgtggatctttggaaggtagcagagcgtaccgagcttttcacgggcgcagatcttgaaggcctgtgcagggaggcgggaatggctgccttgagggaaagtctgaggtcagagcgttttgtatgtgacgatattcacttccaggccgcgctaagatccttgcgtccatcacttacacaatcagtggttgatgagtactcaaatgcagccatccatggtccattgacgaggagaaaacactaaaagatgtattattctggcgcacaagcatcagtgtcgcccattgttgattctgactagttatcagaacattgtatcatcggtctgctgtatatattgaccaaagttgtgacatgttcccatatgattgc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0498800, RefSeq:Os04g0498800