Difference between revisions of "Os01g0147900"
(→Function) |
(→References) |
||
| Line 28: | Line 28: | ||
==References== | ==References== | ||
| − | + | ||
| + | <references> | ||
| + | <ref name="pmid:17080612">Tanaka, N; Matsuoka, M; Kitano, H; Asano, T; Kaku, H; Komatsu, S. (2006) gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack.Plant, cell & environment 29: 4.</ref> | ||
| + | <ref name="pmid:19756991">Sun, Q; Hu, C; Hu, J; Li, S; Zhu, Y. (2009) Quantitative proteomic analysis of CMS-related changes in Honglian CMS rice anther.The protein journal 28: 7-8.</ref> | ||
| + | <ref name="pmid:8790301">Snowden, KC; Buchhholz, WG; Hall, TC. (1996) Intron position affects expression from the tpi promoter in rice.Plant molecular biology 31: 3.</ref> | ||
| + | <ref name="pmid:8278510">Xu, Y; Hall, TC. (1993) Cytosolic triosephosphate isomerase is a single gene in rice.Plant physiology 101: 2.</ref> | ||
| + | <ref name="pmid:12232342">Xu, Y; Yu, H; Hall, TC. (1994) Rice Triosephosphate Isomerase Gene 5[prime] Sequence Directs [beta]-Glucuronidase Activity in Transgenic Tobacco but Requires an Intron for Expression in Rice.Plant physiology 106: 2.</ref> | ||
| + | <ref name="pmid:8108523">Xu, Y; Harris-Haller, LW; McCollum, JC; Hardin, SH; Hall, TC. (1993) Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.).Plant physiology 102: 2.</ref> | ||
| + | </references> | ||
==Structured Information== | ==Structured Information== | ||
Revision as of 01:39, 13 May 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
Among the proteins hyper-accumulated in gid1 were osmotin, triosephosphate isomerase, probenazole inducible protein (PBZ1) and pathogenesis-related protein 10[1].
Triosephosphate isomerase, fructokinase II, DNA-binding protein GBP16 and ribosomal protein L3B were over-expressed in YTB, while oligopeptide transporter, floral organ regulator 1, kinase and S-adenosyl-L: -methionine synthetase were over-expressed in YTA[2].
A series of promoter-GUS fusion constructs containing a portion of the rice triosephosphate isomerase (tpi) promoter, the first tpi intron, and the gene encoding bacterial beta-glucuronidase (GUS) were made[3].
A cDNA clone encoding rice (Oryza sativa L.) cytosolic triosephosphate isomerase (TPI), an important glycolytic enzyme, was isolated and characterized[4].
In rice (Oryza sativa L.), cytosolic triosephosphate isomerase (TPI) is encoded by a single gene[5].
Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.)[6].
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here.
References
- ↑ Tanaka, N; Matsuoka, M; Kitano, H; Asano, T; Kaku, H; Komatsu, S. (2006) gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack.Plant, cell & environment 29: 4.
- ↑ Sun, Q; Hu, C; Hu, J; Li, S; Zhu, Y. (2009) Quantitative proteomic analysis of CMS-related changes in Honglian CMS rice anther.The protein journal 28: 7-8.
- ↑ Snowden, KC; Buchhholz, WG; Hall, TC. (1996) Intron position affects expression from the tpi promoter in rice.Plant molecular biology 31: 3.
- ↑ Xu, Y; Hall, TC. (1993) Cytosolic triosephosphate isomerase is a single gene in rice.Plant physiology 101: 2.
- ↑ Xu, Y; Yu, H; Hall, TC. (1994) Rice Triosephosphate Isomerase Gene 5[prime] Sequence Directs [beta]-Glucuronidase Activity in Transgenic Tobacco but Requires an Intron for Expression in Rice.Plant physiology 106: 2.
- ↑ Xu, Y; Harris-Haller, LW; McCollum, JC; Hardin, SH; Hall, TC. (1993) Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.).Plant physiology 102: 2.
Structured Information
| Gene Name |
Os01g0147900 |
|---|---|
| Description |
Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase) |
| Version |
NM_001048551.1 GI:115434515 GeneID:4325211 |
| Length |
3734 bp |
| Definition |
Oryza sativa Japonica Group Os01g0147900, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:2588835..2592568 |
| Sequence Coding Region |
2589074..2589121,2589214..2589296,2589414..2589492,2589622..2589716,2590198..2590330 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008394:2588835..2592568 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008394:2588835..2592568 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgggccgcaagttcttcgttggtggcaactggaaatgcaacgggaccactgatcaggtggacaaaattgtgaaaattctgaatgagggacagattgcttctacagatgttgttgaggtggttgtcagcccaccttatgtgttccttcccgtggtcaagagtcagctgcgcccggagatccaagttgctgctcagaattgttgggtgaagaagggcggggctttcaccggtgaggtcagcgctgagatgcttgtcaaccttagtattccctgggttattcttggacactctgaaaggaggagtttgttgggtgaatcaaatgagtttgttggagacaaagtggcatatgcgctctctcagggcttgaaggtcattgcatgtgttggtgagactctcgagcagcgggaatctggttcgaccatggatgttgttgctgcacaaacaaaagcaatttctgaaaggatcaaggattggactaatgtggttgttgcctatgaacctgtgtgggccattggaactggtaaagttgctacaccagatcaagcacaagaagtgcatgatggcctgaggaagtggctcgctgctaatgtcagtgcagaggttgctgaatcaacaaggatcatctatggaggttccgtaactggtgcgaactgcaaggagctggcagcaaagcctgatgttgatggttttctcgtcggtggtgcttcattgaagcctgaattcatcgacatcatcaactccgccaccgtgaagtccgcctaa</cdnaseq> |
| Protein Sequence |
<aaseq>MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSP PYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSL LGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTN VVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANC KELAAKPDVDGFLVGGASLKPEFIDIINSATVKSA</aaseq> |
| Gene Sequence |
<dnaseqindica>3448..3495#3273..3355#3077..3155#2853..2947#2239..2371#1884..1968#1406..1529#1197..1272#52..90#cccccccccccccccccgcgtccagttccatctaatcagcttctcgtcgagatgggccgcaagttcttcgttggtggcaactggaaatgcgtaatttttttctcttcctgcttgaaatctctagtcgcatgttcttgtgtctcggtgactcaggagaatttttgatttttttttctgttctggaacgcgatttagggagtgttcgttaggtggagataggagagattgtctctcgttttccgcgcgcacgcttttcaaactactaaacggtgcgttttttgcaaaaaatttcaataggaaagttgctttaaaaaatcatattaatccatttttgaaatttaaaatagttaatactcaattaatcatgagctaatggcttacctcgttttgcgtatcttcccaatctcctcaatccccttctcttcaaacactcccttagtgatttaagggtggagattgccatgaaggggatggatcttttttttttcttgaaacattaggagagatttttccacgctgatccagatcggtgtagaaaccaccctggttggttgagaagaatggatggatggcggggtttttgagatccggataatatatctgaagatttggtcttcgttttcagtccggtcctaatcctaggaaccagatgcgattagctgctacatatgctactcctacacgattagccgcgttttttggcgtttcaacgcgagacactcttagtgggaaatttggagttcactgatcttcaggtgttccatcttgcgcaaagtgtgatgtcgggtatgtttagctcggttcagacttcagagtctgaaacttttatgaggtgcatgcgtgtattatccagtgtctagaatttgtctctgacgtgaattatcaagtgtctagaatttaagtcagatcaaggagccaacacccggagatttattaatcaaatggtgcatattagcttttgtcaatcgtgatttctagctttgaactgttgttaacttacacaagaaacgcgtcatgcacttggagaacggtagtggtattgatgcttcttgtcgaatttctcgtatgcatatatgctgagaaatgcgaaagaaaagcacgggtattttgtgtgatttcaatgtcgtagtgtggtctgtatcaatcttcaaatatttgcttgctaaagactgacatgattcattttgatgtaacagaacgggaccactgatcaggtggacaaaattgtgaaaattctgaatgagggacagattgcttctacagatgttgttggtatgtgggactacgttgcagattgattccttttaagtgcgatattttctgtttttatcattcccacgaaatctgtatacaaaaaaactgcatggtaggacatgcttatcaatctggaaccattgtgctgcagaggtggttgtcagcccaccttatgtgttccttcccgtggtcaagagtcagctgcgcccggagatccaagttgctgctcagaattgttgggtgaagaagggcggggctttcaccggtgaggtcaggttagttatcagttctgtttcagttgtacacccaacatgctgtaatgatcaccagaaggttagctacaaacctacttgcagaaagatgcgccattacgctgtttgattaggtctcatatttaacatcacccagaaacaatgccatcttttcaagctagcatgccatcttttcaagctagcctgccttcacttggtattacatgttgcatgttgttatatttgctcagtcacagttagtgttgtatgattggcagtctcaatagccgtcttcgcttttaggcgaggttataagccattcaccattgaactcatcttttgtttaagttggttgttaatctattatttttaatgcagcgctgagatgcttgtcaaccttagtattccctgggttattcttggacactctgaaaggaggagtttgttgggtgaatcaaatgaggtatgatctagtttacattctatgaaatgtgcagatatgaattttgtatagttttagctggaaatagtgcaacaagccaaacctggggataacggtcactggagacaatattgtagctacttagctggcactaaatttgatcctaatccaatatatcaccaacttaattttacaaaggtgatcttgttcgctacaaattggtggatgatctgctgtgaggttttcgtatcataatcatctaatggtttcctgctctttcctgaattgcagtttgttggagacaaagtggcatatgcgctctctcagggcttgaaggtcattgcatgtgttggtgagactctcgagcagcgggaatctggttcgaccatggatgttgttgctgcacaaacaaaagcaatttctggtatctaacctctacttttggtctttttgactctgttgaattccttatccatttgtgtactcgtttgatctaaatggtttgctgttcgcctatatgttcaaatggtatctaggataattttccattcattgaagctttatcttgcgaaagttagttagatctcttttgatgcactactcatttcttgtttggctaaattctacacattctacatcagaaaaaaaaaatcttgctaaaagtcttataagccacttggttatcacatattcactatgtgggagcactctaaaaatgggaacatctggtgatcagatgaatccacaggcagtaatgtaatgtaatagttcaagtgattacttgttcaagtggttaatggtttaatctagaccttaatgtaatgtctcatagttagcatcatttgataaaagattagctcatcacatgagaattcaggctgaaatgactatggactgttttacagaaaggatcaaggattggactaatgtggttgttgcctatgaacctgtgtgggccattggaactggtaaagttgctacaccagatcaagcacaagaagtaagtttcttatattgataagcacacaaagtgttcattcatgaacttctgcacgttccataattgttacctatgctctagataaaatatcttgtttaaacaaccatctggtttgtattattgtatcaggtgcatgatggcctgaggaagtggctcgctgctaatgtcagtgcagaggttgctgaatcaacaaggatcatctatggaggtataaatctacagtatattttcttgaacaaacactttacgattgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattttgctacaggttccgtaactggtgcgaactgcaaggagctggcagcaaagcctgatgttgatggttttctcgtcggtggtgcttcattgaaggtaaagaataatacgaacacagtagaacgattgtacagacatgattacccgcctgattcactgaataccgtctccctttctttgttctgtagcctgaattcatcgacatcatcaactccgccaccgtgaagtccgcctaagatcttcaccccattcaccttcggcgtgggaagatgtctgaagaggatcatacctttttctgtgcttatgtaatgctagtagttttgtgctggagcagctactctttttcctccccttcacttccctgaagctacctgcagcttgagcaatgctaataatgcacaccactgaacatactaccataccaataatgtttagctccttttgtcgtgagttattatcatgtgagtttcagatc</dnaseqindica> |
| External Link(s) |
