Difference between revisions of "QGL3"

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−
Chromosomal|
+
LOCUS      AK288069                1802 bp    mRNA    linear  PLN 16-FEB-2008
−
Gene Name=QGL3|
+
DEFINITION  Oryza sativa Japonica Group cDNA, clone: J075158N05, full insert
−
Description=putative protein phosphatase with Kelch-like repeat domain (OsPPKL1)|
+
            sequence.
−
version=Gene ID: QTLs|
+
ACCESSION  AK288069
−
Length=46.6kb|
+
VERSION    AK288069.1  GI:156764684
−
Definition=Oryza Sativa Japonica Group"QGL3",chromosomal gene|
+
KEYWORDS    FLI_CDNA; CAP trapper.
−
Source=Oryza Sativa Japonica Group
+
SOURCE      Oryza sativa Japonica Group (Japanese rice)
−
+
  ORGANISM  Oryza sativa Japonica Group
−
  ORGANISM  Oryza sativa Japonica Group
 
 
             Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
             Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
             Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
             Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
             clade; Ehrhartoideae; Oryzeae; Oryza.
 
             clade; Ehrhartoideae; Oryzeae; Oryza.
−
 
+
REFERENCE  1
−
Chromosome = [[:category:Japonica Chromosome|Chromosome]]|
+
  AUTHORS  Kikuchi,S.
−
AP = Chromosome 3|
+
  TITLE    Oryza sativa full length cDNA
−
CDS =RM15551..RM15578|
+
  JOURNAL  Published Only in Database (2007)
−
GCID = <gbrowseImage1>
+
REFERENCE  2  (bases 1 to 1802)
−
name=NC_011033:263141..263365
+
  AUTHORS  Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
−
source=Rice_Japonica_Chromosome
+
            Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
−
preset=GeneLocation
+
            Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
−
</gbrowseImage1>|
+
            Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
−
GSID = <gbrowseImage2>
+
            Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
−
name=NC_011033:263141..263365
+
            Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
−
source=Rice_Japonica_Chromosome
+
            Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
−
preset=GeneLocation
+
            Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
−
</gbrowseImage2>|
+
            Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
−
AA = <aaseq>MLEGAKLIGAGAATIALAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIALFALMMAFLILFVF</aaseq>|
+
            Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
−
DNA = <dnaseqindica>1..225#atgttagaaggagctaaatcaataggtgccggagctgctacaattgctttagcgggagctgctgtcggtattggaaacgtcctcagttcttcgattcattccgtggcgcgaaatccttcattggctaaacaattatttggttatgccattttgggctttgctctcaccgaagctattgcattgtttgccccaatgatggcctttctgatttcattcgttttccga</dnaseqindica>|
+
            Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
−
Link = [http://www.ncbi.nlm.nih.gov/gene?term=6450130 NCBI Gene:atp9]
+
            Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
−
}}
+
            Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
−
[[Category:Genes]]
+
            Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
−
[[Category:Japonica mRNA]]
+
            Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
−
[[Category:Oryza Sativa Japonica Group]]
+
            Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
−
[[Category:Japonica Genes]]
+
            Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
−
[[Category:Japonica Chromosome]]
+
            Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
−
[[Category:Chromosome]]
+
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
 +
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
 +
            Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
 +
            Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
 +
            Bito,T.
 +
  TITLE    Direct Submission
 +
  JOURNAL  Submitted (04-SEP-2007) Contact:Shoshi Kikuchi National Institute
 +
            of Agrobiological Sciences, Division of Genome and Biodiversity
 +
            Research; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
 +
COMMENT    This clone is one of the 1.9K full-length cDNA clones from japonica
 +
            rice.
 +
            URL:http://cdna01.dna.affrc.go.jp/cDNA/
 +
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
 +
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
 +
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
 +
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
 +
            Yamamoto,M. and Nakahama,Y.
 +
            NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
 +
            Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
 +
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
 +
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
 +
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
 +
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
 +
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
 +
            Yoshimura,A., Matsubara,K. and Murakami,K.
 +
            Genome Exploration Research Group in Riken Genomic Sciences Center
 +
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
 +
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
 +
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
 +
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
 +
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
 +
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
 +
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
 +
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
 +
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
 +
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
 +
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
 +
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
 +
            Yasunishi,A. and Hayashizaki,Y.
 +
FEATURES            Location/Qualifiers
 +
    source          1..1802
 +
                    /organism="Oryza sativa Japonica Group"
 +
                    /mol_type="mRNA"
 +
                    /cultivar="Nipponbare"
 +
                    /db_xref="taxon:39947"
 +
                    /clone="J075158N05"
 +
ORIGIN     
 +
        1 gctgtcaatt gaccaatttg aaaatgaggg aagaagagtc agctatggca cccctgagaa
 +
      61 tgcaactgct gcaagaaagt tgctagatcg acagatgtcc attaatagtg ttcctaaaaa
 +
      121 ggtgattgca tctctattga aacctcgtgg ttggaagccc cctgtgcgaa gacagttctt
 +
      181 cttggactgc aatgagattg cagatctatg tggtagtgct gagagaatat tttcaagtga
 +
      241 accaagtgtt ctgcaactta aagctcctgt taagatattt ggtgatttac atggtcaatt
 +
      301 tggtgacctc atgcgattgt ttgatgagta tggtgctcct tcaacagcag gagacattgc
 +
      361 ttacattgat tatctcttct tgggtgatta tgtggatcgt ggccagcata gcttagaaac
 +
      421 aatgactctt cttcttgcat tgaaggttga gtatcctcag aatgtacatt tgattcgtgg
 +
      481 aaatcatgaa gctgcagata ttaatgcttt gtttggcttc cgaatagagt gcatagagcg
 +
      541 aatgggtgag agagatggta tttggacatg gcaccgaatg aatagattat ttaactggct
 +
      601 tcctttggct gcacttatcg aaaagaaaat tatatgtatg catggtggaa ttggtcggtc
 +
      661 aatcaaccat gttgagcaaa ttgagaatct tcagagacca attaccatgg aagcaggctc
 +
      721 tgttgtcctt atggatcttc tatggtctga tccaaccgag aatgacagtg ttgaaggatt
 +
      781 gagaccaaat gctcgaggcc ctggccttgt tacgtttggg cctgatcgtg ttatggagtt
 +
      841 ttgcaacaat aatgatcttc aactaattgt gcgagcgcat gagtgtgtga tggatggctt
 +
      901 tgagcgcttt gctcaaggtc acctgatcac tcttttctct gcaacaaact attgtggtac
 +
      961 tgcaaataat gccggtgcta tcttagtttt gggcagagat cttgtggtcg ttccaaaact
 +
    1021 gattcatcct ttgcccccgg caatcacatc acctgagacc tctccggagc atcatattga
 +
    1081 ggacacatgg atgcaggagc tgaatgcaaa cagaccaccg actccaacaa ggggccgccc
 +
    1141 ccaagtagca gctaacgatc gaggttctct tgcctggata tagtagagtg gccagatatt
 +
    1201 gattaatctg atctatatat gaagtctcga tcggcgcgat cttgctattt ttattttttt
 +
    1261 ctgcacagag taaagtgatt tgtgtttgcg agacagtggc ccacagccat gccaaaaggt
 +
    1321 aaacatttaa agtgagcaag gtagtagata agatggatga acagatgatc atcctgaaca
 +
    1381 gcgccgtcca gtccaagctg tttcccgaac acgacagtaa aacaattcaa ttcacagaga
 +
    1441 ttatctggag atcgacgagg cttcacttca cctgtatata ctcggctgct ggtggatagg
 +
    1501 cagttgtatg tggtttttgc atccaattgg aatggcaaaa aggaatagtg ttattgtact
 +
    1561 agctattctt tcctctcttt ttttttttcc tttctttttg ggatcttgag ttctgatttt
 +
    1621 gcaaggtgct tctgaactgc tggagagaga ccgatggctg gtgttcgtgg tccagtcgtg
 +
    1681 tataatagcc ttccctcctg ctactttcgt cgcagcatac cccttgtaat ttcagtctga
 +
    1741 tgatgctgat gtacaatttt gtgttccaag ttttgggtgg cgaatggagt ttgatttggt
 +
    1801 tt
 +
//

Revision as of 14:34, 20 May 2014

LOCUS AK288069 1802 bp mRNA linear PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group cDNA, clone: J075158N05, full insert 

           sequence.

ACCESSION AK288069 VERSION AK288069.1 GI:156764684 KEYWORDS FLI_CDNA; CAP trapper. SOURCE Oryza sativa Japonica Group (Japanese rice) 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.

REFERENCE 1 

 AUTHORS   Kikuchi,S.
 TITLE     Oryza sativa full length cDNA
 JOURNAL   Published Only in Database (2007)

REFERENCE 2 (bases 1 to 1802) 

 AUTHORS   Kikuchi,S., Adachi,J., Aizawa,K., Akimura,T., Arakawa,T.,
           Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A.,
           Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N.,
           Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y.,
           Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y.,
           Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H.,
           Kawagashira,N., Kawai,J., Kawamata,M., Kishikawa-Hirozane,T.,
           Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y.,
           Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T.,
           Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T.,
           Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M.,
           Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R.,
           Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M.,
           Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R.,
           Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D.,
           Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T.,
           Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K.,
           Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
           Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
           Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
           Yasunishi,A., Yazaki,J., Yokomizo,S., Yoshimura,A., Eguchi,K.,
           Kanamori,H., Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and
           Bito,T.
 TITLE     Direct Submission
 JOURNAL   Submitted (04-SEP-2007) Contact:Shoshi Kikuchi National Institute
           of Agrobiological Sciences, Division of Genome and Biodiversity
           Research; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan

COMMENT This clone is one of the 1.9K full-length cDNA clones from japonica 

           rice.
           URL:http://cdna01.dna.affrc.go.jp/cDNA/
           NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
           Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
           Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
           Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.,
           Yamamoto,M. and Nakahama,Y.
           NIAS STAFF Institute Sequence group: Eguchi,K., Kanamori,H.,
           Yamagata,H., Kamiya,K., Kurita,K., Kikuta,A. and Bito,T.
           FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
           Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
           Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
           Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
           Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
           Yoshimura,A., Matsubara,K. and Murakami,K.
           Genome Exploration Research Group in Riken Genomic Sciences Center
           and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
           Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
           Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
           Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
           Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
           Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
           Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
           Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
           Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
           Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
           Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
           Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
           Yasunishi,A. and Hayashizaki,Y.

FEATURES Location/Qualifiers 

    source          1..1802
                    /organism="Oryza sativa Japonica Group"
                    /mol_type="mRNA"
                    /cultivar="Nipponbare"
                    /db_xref="taxon:39947"
                    /clone="J075158N05"

ORIGIN 

       1 gctgtcaatt gaccaatttg aaaatgaggg aagaagagtc agctatggca cccctgagaa
      61 tgcaactgct gcaagaaagt tgctagatcg acagatgtcc attaatagtg ttcctaaaaa
     121 ggtgattgca tctctattga aacctcgtgg ttggaagccc cctgtgcgaa gacagttctt
     181 cttggactgc aatgagattg cagatctatg tggtagtgct gagagaatat tttcaagtga
     241 accaagtgtt ctgcaactta aagctcctgt taagatattt ggtgatttac atggtcaatt
     301 tggtgacctc atgcgattgt ttgatgagta tggtgctcct tcaacagcag gagacattgc
     361 ttacattgat tatctcttct tgggtgatta tgtggatcgt ggccagcata gcttagaaac
     421 aatgactctt cttcttgcat tgaaggttga gtatcctcag aatgtacatt tgattcgtgg
     481 aaatcatgaa gctgcagata ttaatgcttt gtttggcttc cgaatagagt gcatagagcg
     541 aatgggtgag agagatggta tttggacatg gcaccgaatg aatagattat ttaactggct
     601 tcctttggct gcacttatcg aaaagaaaat tatatgtatg catggtggaa ttggtcggtc
     661 aatcaaccat gttgagcaaa ttgagaatct tcagagacca attaccatgg aagcaggctc
     721 tgttgtcctt atggatcttc tatggtctga tccaaccgag aatgacagtg ttgaaggatt
     781 gagaccaaat gctcgaggcc ctggccttgt tacgtttggg cctgatcgtg ttatggagtt
     841 ttgcaacaat aatgatcttc aactaattgt gcgagcgcat gagtgtgtga tggatggctt
     901 tgagcgcttt gctcaaggtc acctgatcac tcttttctct gcaacaaact attgtggtac
     961 tgcaaataat gccggtgcta tcttagtttt gggcagagat cttgtggtcg ttccaaaact
    1021 gattcatcct ttgcccccgg caatcacatc acctgagacc tctccggagc atcatattga
    1081 ggacacatgg atgcaggagc tgaatgcaaa cagaccaccg actccaacaa ggggccgccc
    1141 ccaagtagca gctaacgatc gaggttctct tgcctggata tagtagagtg gccagatatt
    1201 gattaatctg atctatatat gaagtctcga tcggcgcgat cttgctattt ttattttttt
    1261 ctgcacagag taaagtgatt tgtgtttgcg agacagtggc ccacagccat gccaaaaggt
    1321 aaacatttaa agtgagcaag gtagtagata agatggatga acagatgatc atcctgaaca
    1381 gcgccgtcca gtccaagctg tttcccgaac acgacagtaa aacaattcaa ttcacagaga
    1441 ttatctggag atcgacgagg cttcacttca cctgtatata ctcggctgct ggtggatagg
    1501 cagttgtatg tggtttttgc atccaattgg aatggcaaaa aggaatagtg ttattgtact
    1561 agctattctt tcctctcttt ttttttttcc tttctttttg ggatcttgag ttctgatttt
    1621 gcaaggtgct tctgaactgc tggagagaga ccgatggctg gtgttcgtgg tccagtcgtg
    1681 tataatagcc ttccctcctg ctactttcgt cgcagcatac cccttgtaat ttcagtctga
    1741 tgatgctgat gtacaatttt gtgttccaag ttttgggtgg cgaatggagt ttgatttggt
    1801 tt

//

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