Difference between revisions of "Os06g0622700"
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==Annotated Information== | ==Annotated Information== | ||
===Function=== | ===Function=== | ||
| − | + | Os06g0622700 is a homolog of ATbZIP60. Expression profiles of these transcription factors | |
| − | |||
| − | Os06g0622700 is a homolog of ATbZIP60 | ||
| − | |||
| − | |||
obtained by microarray analyses showed that expression of | obtained by microarray analyses showed that expression of | ||
Os06g0622700 was 1.9-fold enhanced by suppression of | Os06g0622700 was 1.9-fold enhanced by suppression of | ||
| Line 18: | Line 14: | ||
Furthermore, transcript levels of Os06g0622700 in rice | Furthermore, transcript levels of Os06g0622700 in rice | ||
calli were increased by treatment with DTT or tunicamycin | calli were increased by treatment with DTT or tunicamycin | ||
| − | (Figure | + | (Figure 1b and c). By contrast, transcript levels of |
the other two bZIPs exhibited little difference between these | the other two bZIPs exhibited little difference between these | ||
transgenic lines and wild-type rice. Treatment of calli with | transgenic lines and wild-type rice. Treatment of calli with | ||
DTT or tunicamycin also led to no significant change in | DTT or tunicamycin also led to no significant change in | ||
| − | expression of the two bZIPs (Figure | + | expression of the two bZIPs (Figure 1b). These results |
suggested that the Os06g0622700 bZIP transcription factor | suggested that the Os06g0622700 bZIP transcription factor | ||
plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype. | plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype. | ||
Revision as of 14:58, 19 May 2014
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Contents
Annotated Information
Function
Os06g0622700 is a homolog of ATbZIP60. Expression profiles of these transcription factors obtained by microarray analyses showed that expression of Os06g0622700 was 1.9-fold enhanced by suppression of BiP1 and 3.3-fold enhanced by over-expression of BiP1 compared to wild-type. RT-PCR analysis of Os06g0622700 expression in these transgenic rice seeds at 14 DAF also supported this result. As shown in Figure 6(a), the transcript abundance of Os06g0622700 in these transgenic seeds during maturation was significantly higher than that of wildtype. Furthermore, transcript levels of Os06g0622700 in rice calli were increased by treatment with DTT or tunicamycin (Figure 1b and c). By contrast, transcript levels of the other two bZIPs exhibited little difference between these transgenic lines and wild-type rice. Treatment of calli with DTT or tunicamycin also led to no significant change in expression of the two bZIPs (Figure 1b). These results suggested that the Os06g0622700 bZIP transcription factor plays a critical role in the induction of chaperone genes.[[during maturation was significantly higher than that of wildtype.
Expression
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Evolution
Os06g0622700 is a homolog of ATbZIP60.
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os06g0622700 |
|---|---|
| Description |
Eukaryotic transcription factor, DNA-binding domain containing protein |
| Version |
NM_001064635.1 GI:115469001 GeneID:4341554 |
| Length |
1991 bp |
| Definition |
Oryza sativa Japonica Group Os06g0622700, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:25918948..25920938 |
| Sequence Coding Region |
25918979..25919418,25919822..25920042,25920504..25920757 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:25918948..25920938 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:25918948..25920938 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacggaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctag</cdnaseq> |
| Protein Sequence |
<aaseq>MDVEFFADLDLDALLASFSSSAAAAGSGVSGLFAPSPPHDAEAG SPESVSSRRPSPSREAALSEIERFLMEEGPAAEEGVGAEDFFDALLVDGGEEEEEEEG KGSEAGGSTDGDSGKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMRNRDSAMKSRE RKKMYVKDLETKSKYLEAECRRLSYALQCCAAENMALRQSLLKDRPVGAATAMQESAV LTETLPLVSLLWLVSIVCLLPVPGLPNRNPVARSSAGRDLATVTGKKTSSEQQLEETL LLHGRRCKGSRARIKLDTGPFRLAAAAC</aaseq> |
| Gene Sequence |
<dnaseqindica>32..471#875..1095#1557..1810#gagagacaaaaatatctccatcgcgatctccatggatgtagagttcttcgccgacctcgacctcgacgcgctcctcgcctccttctcctcctccgccgccgccgccggctccggcgtctcgggcctcttcgccccgtcaccgccgcacgatgcggaggcggggtcgccggagtcggtgagctcccggcggcccagcccttcccgggaggcggcgctgtcggagatcgagaggttcctgatggaggagggccccgcggcggaggagggggtcggcgcggaggatttcttcgacgcgctgctcgtcgacggcggggaggaggaggaggaagaagaggggaaggggagtgaggcggggggaagcacggatggggattccgggaaggagaatgaggtggctaccccggacgcggagaaggaggatgtggaggcggaggtggatggcgatgatcccatgagcaagaagaagaggaggtatgtatgaattgcctaaaaacttgggatttctaaaaatcagggggatttcgtgtgtacaaagatttgtgaatttacataggtagctaggaataatggtcaggttttagttcaacacaattgatcttattcagtgagtgccagaagtccagaaccgcactacacccatagtacattttttttattaattaaaacattatatatgtacatacatgagtatatgatctaatttgtcgtaataagatgcatggtctttttagtgctaatcctttgtgaaattgtaagaaattgctaggctttcaattataagagtgtatggtcttttcaactataagatgttttccgtaatcaaagatgttctagttagacaataatctaatagtatgtgttatgaatttatcaggcagatgagaaatagggattctgccatgaaatcgagggagaggaagaagatgtatgttaaggacctagagactaagagcaagtatctagaggccgagtgtcgtcgcctcagctacgcgcttcagtgctgcgcagctgagaacatggcgctgcgccagagcttgttgaaggataggcctgtcggtgccgccacagccatgcaggagtctgccgtactcacgggtaagacatatcgacaacattttctgtttcatacttctatttcgacatggatgaacaaatcttttcttgccgatcattttgaattgctcagtatgctgacaaacttgtgcttggcatcaatatattcggtgtggtctcatggatgatccgcctaagctaatttttgttgaattcccatgaaatcaaacagctagctattgtagttatagccaattgttgactacattttctgtgtacaagtatgcgtggtttatgcacaaatctgcattgtttatacaataacacttgcttagccttttgttttccaactttggacctaatcagtcaccgaccgaagttgacattaactggaacatggtttctttgctatcctacagtatgcttgagtcataatcctgatgctcctacagtatatttgtgtcataaacctgatgctaaaggtaaccttttcctgtttgcagaaaccctgccgctggtttccctgctttggctcgtgagcatcgtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagagatctcgcgacggtaaccggaaagaagacaagcagtgaacaacagctagaagaaacattactactccatgggaggcgttgcaagggctcgagggcgaggatcaagctagataccggaccgttccgtttagcagcagctgcttgctaggctgccgcttccttgcaaagttgtttccagtctgtattgtagctagcaaatcaaattggcgtgtctatcgcctgtcgtgctgccgcttatccatggactatctttttctttttttggttccttccccccttgtttttataatatcctcctatgcataatgcattatccaggtagttttgaa</dnaseqindica> |
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