Difference between revisions of "Os04g0625900"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os04g0625900| Description = Like-Sm ribonucleoprotein-related, core domain containing protein| Version = NM_001060477.1 GI:115460683 GeneID:43370...")
 
Line 1: Line 1:
 +
Please input one-sentence summary here.
 +
 +
==Annotated Information==
 +
===Function===
 +
Please input function information here.
 +
 +
===Expression===
 +
Please input expression information here.
 +
 +
===Evolution===
 +
Please input evolution information here.
 +
 +
You can also add sub-section(s) at will.
 +
 +
==Labs working on this gene==
 +
Please input related labs here.
 +
 +
==References==
 +
Please input cited references here.
 +
 +
==Structured Information==
 
{{JaponicaGene|
 
{{JaponicaGene|
 
GeneName = Os04g0625900|
 
GeneName = Os04g0625900|

Revision as of 19:59, 22 July 2012

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

Os04g0625900

Description

Like-Sm ribonucleoprotein-related, core domain containing protein

Version

NM_001060477.1 GI:115460683 GeneID:4337065

Length

4749 bp

Definition

Oryza sativa Japonica Group Os04g0625900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:32222641..32227389

Sequence Coding Region

32222729..32222957,32223799..32223920,32224017..32224126,32224280..32224344,32224436..32224623
,32225006..32225251,32225831..32225932,32226103..32226153,32226634..32226724
,32226838..32226992

Expression

GEO Profiles:Os04g0625900

Genome Context

<gbrowseImage1> name=NC_008397:32222641..32227389 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:32222641..32227389 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcccgccccaagaggacgaagccgccgccgccgtcgcgcaaggcggagacggcggcggcggcggcgcagcggccgtcgtcttcgtcgtcgtcgccgtcgccgtccctccccgaggcgctgctgctcgcgacggtgtgcatggtcggcctccccgtggaggtgcaggtccgcgacggatccgcgtacgcgggcgtcctccacaccgcctccgtcgaaggcgcatacggtgttgtgctaaagaaagcgcgaaagatcgctaacgggaatgataatgccaatattcctctgggagcttttgtagatagtcttgttattcacccagatgatctcgttcaagtcattgcaaaggatttttcactccatacaaaagatgtgtgcagaactcctgtttgtgataccgtcgcagccagtgcatatgtgaagcctcaaacttcacatgtgaatgtgtttccactaaaagaggttaagaagtgcagcacgccaggtgaggagactaacatctccattgggagaagttctcctgcctctccaactggatatgtagggccacgcctctcctgtaacgagataatgagttctgcggttgttggatcaaaagatggaaatactaagagtgcagttttgactacacccacaatgtcttcagatgtgaaaatctctcctccagccacagttgctaaaactgccacgccgagcaaaaccattgctaaggaatccaaactcaacccttgtgctagggtcttctctccttcgtttgcaagttccagaccagtacttgcagctgcaccctctgttaacccaatctacatctcaaactctgtagctggagttccaaccgggttacctgtatttgaaactaactcagtgccaggcggttcatccctgtccagcaaggctgttcattataataacctggctgctgcaaactatgctatttcacctcaatatactcagtcaaccatggggcataatgtgagcaggctggatcctgctagaattggcacaccttatcatcccatgcaagttggacctgcttacattagccctagtcctcagcctgttactggtgggaaatttaatcatgttgtttatgtacacccattttctcaggatgtaatgcatggagcacctgttatgccccaaggatggtctcttcctgcaccattgaaatcacatcaagctagcctccagaagttccaaggcacagcccctgtatatgtagccccacctatcatggcaactgggaacctgccattggtggtaccaagccctgcaccgcttgtgcagccattccaggccgttcgtcccatcatggtacctgctgcaagcagcatggttccaggcaaatacatgtaa</cdnaseq>

Protein Sequence

<aaseq>MARPKRTKPPPPSRKAETAAAAAQRPSSSSSSPSPSLPEALLLA TVCMVGLPVEVQVRDGSAYAGVLHTASVEGAYGVVLKKARKIANGNDNANIPLGAFVD SLVIHPDDLVQVIAKDFSLHTKDVCRTPVCDTVAASAYVKPQTSHVNVFPLKEVKKCS TPGEETNISIGRSSPASPTGYVGPRLSCNEIMSSAVVGSKDGNTKSAVLTTPTMSSDV KISPPATVAKTATPSKTIAKESKLNPCARVFSPSFASSRPVLAAAPSVNPIYISNSVA GVPTGLPVFETNSVPGGSSLSSKAVHYNNLAAANYAISPQYTQSTMGHNVSRLDPARI GTPYHPMQVGPAYISPSPQPVTGGKFNHVVYVHPFSQDVMHGAPVMPQGWSLPAPLKS HQASLQKFQGTAPVYVAPPIMATGNLPLVVPSPAPLVQPFQAVRPIMVPAASSMVPGK YM</aaseq>

Gene Sequence

<dnaseqindica>89..317#1159..1280#1377..1486#1640..1704#1796..1983#2366..2611#3191..3292#3463..3513#3994..4084#4198..4352#ttccgctttcgtctcgtctcgcctcgtcgcatcgcatcgcctcaactcccaccaccctctctctcttttccctcccttcctccctcccatggcccgccccaagaggacgaagccgccgccgccgtcgcgcaaggcggagacggcggcggcggcggcgcagcggccgtcgtcttcgtcgtcgtcgccgtcgccgtccctccccgaggcgctgctgctcgcgacggtgtgcatggtcggcctccccgtggaggtgcaggtccgcgacggatccgcgtacgcgggcgtcctccacaccgcctccgtcgaaggcgcatacggtgggtgctcctccctctatcctcctcctcatcctcctccccgtcgttgtttctgtggttgggtggctcgcttagggttcggagatcgcggggatgtggttgtgagcgtgatccagctgtgtgcgcgtgtgtgcgtagtgggtggcgatttttaatagggttggtgctccggctttttttttttttcgtttcgaagttaactggttcgtgatccgcttgttggttgggttgggtggcggtggacgctggacgcttgcgttgtttgttttttggatagtgccatggtgggatggatttgggggtggttgctggttagagatcgctggatgagtttcccccatttgtggcgtggctgtagatgtacttttgtgtttgcggttaagatcttggctgtttggtctttgatcgtcgtgattgcggtggggatttggatgagagtcccgtaaatcgttcctgggttcgtggtctagagaggatctcgcactgggttccaggatcataggcaatgatcctggtctctataatgtaatcgggtatcatggttatgctataaaccaactgcctggttgattgcaaatatatgttgtttttcttctctagaattgagatgccaatttgccatgaagaaatttatgattcatttagtgcattctagcattctggcagcagtcacatttttgggtttgattcgtactccttttggatttgtaatatcctagggatgcattttttttcttgccagatcatgtttataatgttgttctttctggtttcaacaatcaatttagttttctttttctgtgtggagaaaaaatgatactgatgtatttatgttgaacaggtgttgtgctaaagaaagcgcgaaagatcgctaacgggaatgataatgccaatattcctctgggagcttttgtagatagtcttgttattcacccagatgatctcgttcaagtcattgcaaaggtagctttgatgtgcttaaacatgctaacaaattttcccgccaaaagaaaaggtatactaacagattgccttctcgtggacgcttctacttttcaggatttttcactccatacaaaagatgtgtgcagaactcctgtttgtgataccgtcgcagccagtgcatatgtgaagcctcaaacttcacatgtgaatgtgtttccactaaagtatattcttgattcaccaataataggataaaactctttcaattgtttctttaatgatgctggttaataatgtagatttctagcaatctattctgtatatatatttcaatgtctattcattcttgaggttaattcatgctatttctttaacagagaggttaagaagtgcagcacgccaggtgaggagactaacatctccattgggagaagttctcctggtattatgtctaacctctttactattttactccgataattctttttccacttttcttccttgtacttaaacccgtccaactgttatgctagcctctccaactggatatgtagggccacgcctctcctgtaacgagataatgagttctgcggttgttggatcaaaagatggaaatactaagagtgcagttttgactacacccacaatgtcttcagatgtgaaaatctctcctccagccacagttgctaaaactgccacgccgagcaaaaccattgctaaggtgagctctctcggacccttgatacgtaagcatagggaaaactgtgtctagagaattagagatctagaaaaatgttttgctaatatattttaccttttaaggagcccagtactatttggaaagcattatcagttatttcgtccatgtacataacaatctgtgcaaggcttgccaactatgttatcaatgttatcagtgtgttattttcttattttgtattatcaagcacagttctctttccttcctatgtcatggatttctatgcatcctgagggaatgaagccgtgccaattctgtttttatgtttactgctgtcctagatgttctacctttgtaaccttcctgtgcttcatcattgtcatcagtccattcactattgcaggaatccaaactcaacccttgtgctagggtcttctctccttcgtttgcaagttccagaccagtacttgcagctgcaccctctgttaacccaatctacatctcaaactctgtagctggagttccaaccgggttacctgtatttgaaactaactcagtgccaggcggttcatccctgtccagcaaggctgttcattataataacctggctgctgcaaactatgctatttcacctcaatatactcagtcagtaagttctttgattaattcttttataatatcattgttgcttcaatagttcatcactttcttcagattgctgtcatatagtcatgaagtgataaacaaggaaaatattgcaatatggtgccaactcctattcagcaccgacattcctttaagctgataatttgctttatgtgaccactactactatctctacatattttaactattatctttactctggtgtaattttccatttatcttgagattaactattgaactactaatagctatcgtcaggggcggaatcaggcatggggcagctagggcttgagccccatgcctagctccataatccccattataatcttgaaaaatgctatgtaatttatgaaaatatttgagatcccattagctcagccttaggcgtggaaattttctggctccgccactggctatcgtttatcgttatgttatattctgtgcattgaattttcagattctacttcactttgatcttattgctgcataactctggcatgtacgttttgttcggatatgatcctgcctcctgaatccttatacatggttttttgaatgacagaccatggggcataatgtgagcaggctggatcctgctagaattggcacaccttatcatcccatgcaagttggacctgcttacattagccctagtcctcagcctgtaagttctaatcagttgtatatatataaatatatatatatatatatatatatatatatatatactgatattaatttcaaaatgctgttcatttgtacctattggttacatgatatactatcatttgctcctgtactgatctaatttatttttatgttatgacatcataggttactggtgggaaatttaatcatgttgtttatgtacacccattttctcaggtgagtaatgcaacagtgttatttctattaatagctcaagtggaactctgcgagagtaagatgatgaattaatgatgcaagtacaatttgtgttgtttcatacaatacttttaactgattaaatagtgctgattcattggagatatcatgggtgtcttttgtatcgctcaaccagtagatagtgcaagtgaggcactgttatccaaattgaacttggatattcgtctgttttaaaaaataaaaactactcagctacatttcacacattagataatgtgaagcttcatttcgtggcatgcatctttgttggcaaccctatacattgcgtagtcatttaggcatatgaagctctcctgttaaccgtaatgattaatatttgacattatcatccctctaaaaaactcatcctagttatatttactgcaaatacaaattgccctaactgactttagctgatctactatatgctttccgctgaaggatgtaatgcatggagcacctgttatgccccaaggatggtctcttcctgcaccattgaaatcacatcaagctagcctccagaagttccaaggtaaaaatcgtactcattgtcgaatggttcctttattttaatggaaggtattaaaatgtttattttatttattcattacactaatcaaaacatttaacgtagaaactctccaggcacagcccctgtatatgtagccccacctatcatggcaactgggaacctgccattggtggtaccaagccctgcaccgcttgtgcagccattccaggccgttcgtcccatcatggtacctgctgcaagcagcatggttccaggcaaatacatgtaaacttgtcatagcagtgtgatatcagtttttgttggaagaatcttggttttacccctttggccgttggggtttacatctaagaggactcgcagttttgcctaatctgttaattctcttgctagttgctggtctgtgtccgtctttttgttggaaggacttgcaacttttaccattcttaatgctttggcatcatcacgattttccttttttcttttttttttctttttggatcattggggtgggggtggtgggggtgttccatgagagcagttaaatgaaatagagaatattgaagcattttttttgtcatgtcaaataccttttccctttttgaagagtagcatgtactatgtacaatgagacactgtaaaagagttagatagtaaattgattgttt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0625900, RefSeq:Os04g0625900