Os09g0272900

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Annotated Information

Function

  A prerequisite for the plant to induce defence response is the recognition of microbes and putative pathogens. Therefore, plants detect conserved microbial molecules called pathogen-(or microbe-) associated molecular patterns (PAMPs/MAMPs) as well as damage-associated molecular patterns.DAMPs are endogenous elicitors of the plant and are produced in consequence of the damage that is caused by plant-colonizing pathogens. However, resistance 

as a consequence of PAMP-induced defence responses is designated as PAMP-triggered immunity (PTI). PAMPs are usually epitopic structures within molecules and are essential structural components for the microbe. They are present in many microbial species, and are, while not existing in the potential host, perceived by a broad spectrum of host species. Some typical bacterial PAMPs are lipopolysaccharides (LPS), peptidoglycans (PGNs), flagellin, and the elongation factor Tu (EF-Tu). LPS are found in the outer membrane of Gram-negative bacteria, and plant cells predominantly recognise the conserved lipid A but also the core oligosaccharide and the O-antigen structure of LPS.

Expression

The expression of PR genes is often a result of triggered SA-, JA- or ethylene-dependent defence pathways. PR-proteins are classified in at least 17different families based on their primary structure.Many PR protein families possess direct antimicrobial activities: proteins of the PR3, PR4 and PR-11 families work as chitinases, whereas the PR-2 family represent β-1,3-glucanases. By contrast, the microbial targets of many PR-families are still unkown. How is PR gene expression activated? PR-1 gene expression is predominantly triggered by the SA-pathway and, exogenous application of SA is sufficient to induce PR-1 expression. NPR-1 (NON-EXPRESSOR OF PR GENES1) is acentral mediator of SA signalling and PR gene expression. The corresponding mutant impaired in NPR-1 expression does not respond to SA application by PR gene expression, but accumulates SA after pathogen infection.

Evolution

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Labs working on this gene

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References

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Structured Information

Gene Name	Os09g0272900
Description	Similar to Skp1 (Fragment)
Version	NM_001069277.1 GI:115478293 GeneID:4346585
Length	19453 bp
Definition	Oryza sativa Japonica Group Os09g0272900, complete gene.
Source	Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome	Chromosome 9
Location	Chromosome 9:6037570..6057022
Sequence Coding Region	6037764..6038320,6046484..6046523
Expression	GEO Profiles:Os09g0272900
Genome Context	<gbrowseImage1> name=NC_008402:6037570..6057022 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>
Gene Structure	<gbrowseImage2> name=NC_008402:6037570..6057022 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>
Coding Sequence	<cdnaseq>atgattacgctgagcagtcctgtgatgtgtttcatccatgcgtcgtccgtgttcgaccgatcaatggcggcacccgcagcaccgcaggagaccaacgccgcggccggtgagatggtcacgctgatcagctcggacggagctcgcttcgaggtgccggaggcggcggtgaggctgtcgcagacggtgctcgacgagatgaagaaggacgactacaacgccatcaacggcatccctctccccaacgtcgccggcgacgtcctcgccaaggtggtcgagtactgcaccaagcacgcctccgccgccgccgccgccatcaacgccgacacggcgaagacgagcaaggaggaggaggagctgatgatgaagagcttcgacgacgagttcatcctggtggacaaccacatgctgtacagcttgctcacggcggcggacgccatgcgcatccaggggctgatggacctggcatgccagcgattggcggacatgatcaagggcaagacgtcggagcagatgaggcagacgttggggatcaccaacgacttcacgccggaggaagaagaggagtttcgccgggaggacgaggaacaatggctctga</cdnaseq>
Protein Sequence	<aaseq>MITLSSPVMCFIHASSVFDRSMAAPAAPQETNAAAGEMVTLISS DGARFEVPEAAVRLSQTVLDEMKKDDYNAINGIPLPNVAGDVLAKVVEYCTKHASAAA AAINADTAKTSKEEEELMMKSFDDEFILVDNHMLYSLLTAADAMRIQGLMDLACQRLA DMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDEEQWL</aaseq>
Gene Sequence	<dnaseqindica>18703..19259#10500..10539#attcggctctcgctccttttcttggcgcttatatttttcttttcacatcaaactagcttctcaagctgtttagctacatagaattttttttcctctgtactctcggattactgattttcagcttggacaagtactgcttttcttgatcttttgctttacatggaggaattatagtttttctccatactatccctaataatcatatctcatcttccaataggagggtattactattgattctgcatctctcttctacccgctgcaacaatttgaagctagtaaactgttcagtttacaggtccccttgactgttacaggtatgcatcgtttcatcaaatttgtacatatgattttcttatttacctcaagcctcaaggtgtgttatacaacacaattcctagattttctatatgcatatgtccacagaaaagataatactggtcatatgtttgttttttacgtctggttaaacaaacaatcctagaaaaactattattataggcggtcaataattcatttgcacaagtttagctaaccagcatgtagaaattaaataatttgtattggaggattccacaacggtatgtggatatcaatttccagttctattaagaacccacccacggaaatgaattttcaactttttgttaatgtaggcgaaagaaaaacacattttaccaggcaactatacactgtcactggtcgcaaatacgaagtcacagtgatttcttacacgaaatatgcattttatcaaaagtcacaggtcgcaaatcagaagtcactaatacctatttcatattacaaatattttaaaatggaattatcaccaataacaaagttgttgatctcggccagctctttagtttttaatatagggcatatctcccgctgaggctgtttgaaaactttttttaaaaaaacatttttagagttgtttctatttctagacacggtttgttaggttagccgtcagcactaatcatttattccgttagtttttcagaggttctcccgtggaaacaagttgctttaaaatattaaataaatctatttttcaagtttcatataattaaaacttacttaatccagtgctaatgattttctcgtttttgttcgcacttctctccggatcaaacgtagctaatagtgtagacagttagttacagggtctgcctgtcaaaaccgttactcattatttgaaaatgccaaaactttgaaaattgatagaaatttgattttaagtccagtattagtgaatcaaagttctagctctcaacaagatctatctctttgagactgtatagagtccaaatattcgttataagctcttagatctatatttggaaacaaatttatgaattttttgaatgcccttaaatggagatgtgttctgtaatatgtattgaatttgtaaagctcgatgagattctacaactttataactttactggtgataattttttatttgatgtcatttatcctcccaaatatgctaaatgacatgaggtaaggttatgagaggtaatcctctttaccgcccatgtgcatgcttcacgtgaaaaattgcgtgactcgttgttttgtgaaatgtgaattattttattggtttttttttcatacaacatttaaaaactagaaatacatttttctcacgtgactggaatttatctgtacaaaatcgttgatttctacttgtcttagtcataggcggttggctaaacgcctgtaggaataatgggttaccgtcttaccgacctcctatacaatttttttatgtaccaatcattatttcgactattcttcctgaactggagctaggttatactaaaatgataatttatttaacagaaaatagtagtcactataaattgatatgttccaagttgataaaactacattcatttttgttttttattaaattatactccttgtatcccaaataaggtttaaccactttttacttatgtctcatcatataagacaggcaggcatgcatacattaattatcacctcttagttctttaaatttggtttactttaaattctccaccattaaacccccaatcacattgtttgcatgtatggatgtgatccaatcaaggaggtgattaaattctttcttgttctttgtggtagtagtggttgagccttatacttttagatggagagaataaatatatactataggcaccattagtttttttttgtctgtactatgttccacatttttctgtaactctatggaccgaatcgtcttcacgcttgagtcgatatgaacccggccgagtaacttcagagatgatgaaaggtccctcccataagggagataacttatgtcgaccccgtgtagtttaaatcttcctcaagaccatatctccgactagaaatgcacgtgatatgacattgcgattatgataacgactgaattaatgttgcctcacgagcttcttccaattggttgagatcatccactcggtcttcctcgtagcgttcctctttaacattgcgaaatctcatggactcaaactccacttcgcttggcaacattgcttctactccgtaaactaagaaaaacggcgactagcccgtagcccgactgggcgtagtgcgcaaagaccaaagtactgacggcagctgctcaacccatttgccagcatagggacgcagtcggttaaaaaaccgtgccttgatgccttgaagtaccacaccattggcgtgttcaacttgaccattgctcataggatgcgctacagaagcataacatatcttgatactaaagtcttcacaaaaatctttaaaaactccaccagtgaattgggtaccattatctgtaatgattcgattcggcaccccaaaccgatgcacaatgttgataaagaagtctcgagctttgttggctgtaatagttacaactggtttggcttcaatccatttggagaacttatcaacagccacaaaaagttgattaaatcctccggtagcccttttgaaaggaccaaccatgtcaagcccccaaaccgcaaatggccaggaaagagggatggtttgcaactcttggtccggcaaatgaatttgcctagcaaaaaattgacaactttcacacgttcgcacaaccttctcggcatcagacaccgctgtaggccagaaaaaaccctgtcgatatgctttgccgactatcgttcgtgctgccgcatgatttccacaaatgacagaatgaatatcttacaacaattgcctaccttcttctagagaaatatagcaatgtaggattccagatggactctttttgtataaatcggcctcaatcatgacataaagcttgttgtgtcgagaaatccgctcggcttcattcttgtcttgaggcaactcttgctgagttagaaatttgatgattggctctctccagtcggcatcaattactcctacttcattagcctctccatctccgactttatcctttcttgatactgtcagctcatagagatgctcgacaaaaatatcagaaggagctgcttctcgttttgacccaaaattagctaatctatcggctgcttcattgttgtgtctaagcacatgagttaactctcgaccatcaaatttatcttccaatttgcggacttcttgtcgatatgcaaccatattgtcgtcgagacaggaccaatctttcatgacttgattgacaaccaactatgaatcaccacgaaccactagatgtcagatccctagggatacaacaatcttcagcacatggagtaacgtctcatactctgccacattgtgggatgcagaaaagtgtatccacagcacgtagcttaacctttctccagtcggaaaaatcaaaacgacccctgctccggtgcccgatagtctctttgacccgtcaaaatgcatagtccaatactccaatttctccacaggtgtgtcttcttgacactcggtccactcggcaacaaaatctgctagtgcttgagatttgattgaagttcgcagcttgaaagataaatccaaagacatcaactccaaggcccacttcgcaatacgtccagttgcctctcgattatgaagtatgtcaccaagtggaaaagatgtgagcaccgtgatcgagtgactctgaaaataatgggataatttcctgacggtaattaagacaccatataataatttatgtacctggggatatcttattttggagtcggccaagacctcgctaacgaagtaaattggtcgttgaactttttgaacatggccgtcctcttctcgcttgacaaccaaaaccgtgcttaccacttgcgatgttgctgacacataaaacaacaatggctcttgcgggtgtggtgacgctaggattggtggagttgagagaaatcttttgaaatcattgaaggcttgctgagcttcgggtccccattgtaaattgtcagtcttcttgagcagtttgaagaagggcatccctcgctcgtcaagtcttgaaataaaccgactgagcgccgccatgcatccagttagcttctgaacgtctttctaggaactaggcggtttcatgttgaggatggcattgattttctccgggttggcttgtatgcccctatgggacatcataaagccaagcagcttccctgacggtactccgaaggtacacttttcagggttcaacttcatcctgaaagcacggatgctagcaaaggtttcctccaaatcagcaattaagtcatccttctgcttggtcttgatgactacatcatcaactacatcatctgagttgaaaaacatctctggattatgtgttgataagttgctctagcattcttcaatcaaaacggcatggtaatgtagcagtaagctccaaatggtgtgatgaatgaggtcttcgagcagttggattccttcaacctgatctggcggtatcccgagtagcaatccaaaaatctgagtaactcgcagccggttgttgagtcaactacctggtcaatgcgaggtaacccaaaagaatctgtaggatatgatttgttgagatctgtatagtcaacacacatgcactattgttctattttcttccgaactaagactgggtttgccagccattcgggatgtaagacttctttgatgaagcctgccgctaacagcttggttaattcttccttgattgcatccttcctatcctgagcgaatcggcggagtcgttgcttaataggtttagcatcgtctttgacatttaaagagtgctcaatcacctctctaggaatactaggcatatcagatggtttccacgcaaaaatatctttattagcttaaaaaaaggtgatgagcgcgctttcctatttacaatctaactcggcgcttattacagcaattttagatggattagatggatcaagggggatctttttggtcttggcatcgccttctccggaaaagcttgaaggttcatcactgacagatagcaagagattgctacaatcgacaggtcgacaactagaagtaggcatctcttgatcacctgaaggcaactggtgagagatcgctacaaccgctggtcgacaactagtagtaggcatccctcgatcacataaaaacaaccgaaaggtggcgagagatcgctacaatcggctggtcgtcaatcaggagtaggcatctgtcgatcacttgaaggcaactgataggtggcaagagatccctacaatcggctagttgacaaccatgagtaggcatctctcgaccacctgaaagggtgctagtgttggctattatatgtgcatctcatgtagccagcatgactcacatacccaacttatagcatacccggatgtccgttcgcaatcatgtcaggtgatcaagccgacaacgtttgcgaggaattatccgttaacaacctattctcaaatagtgcagccgtggcctgcactatacgtgagataagtcgttaatctttgctggtaggattggtccgacaactccgcatttgtcgagaatgttctcgataatgagttgtactcgaccacaacctactctagtgctcaattgtttctgaaaaatattttctataagaaaagacatatatggcagagaatatcgagtacgtactaaaaaaaactgcatgaatcttctagtattatcaggatataactggcagattcagattaaatatcgcgtactatgtaaacgtaaacaagcatgacttataacatgaacatagcgagcccccaatattagaccatagttagtctagtataggaaacactcgcacaatagatatcgtataaaaaacatgctctaggtaaacagaataagttatggatctgacaatatcgcatcgaactgaaaaataggtacattaaattgtttataaaatattacgtacctttgtagataattgccatatgtatctacgaaattagtagattaatttaaaaaatcaatctaccaattaccttgatgcgtaatcgttcgacatcatatatatttgaaatcttctggtacggtgcgtgcctaggacctttggatgatctcgatagatcaaatggttggcgatgacgattccgagctagttggggggcgtactctggccgggtcagatctcccaaggtgaaagtcgttgaagtatccctcgttgaaaaatccacggtggcaatgacttgatgaagctttaggtgacgagggtcctgatacgtcatagaacacacttcgttcgggtcgtatacccctacagccaaagtcgtcgagtaatttattgtcggagaatccatctcttgaacctatctcgccgaaaccttgaagcaccaaaatcccctacctggcgcgccactgtcgatgttgtagatcacgactacggtatttgcatagtatggggatcgttggtgccagattgtgcgcgagattgaggtaaaagatacgaagacaaggatttttatacaggtccgggccccttaactaacaggtaatagccctacttctgttggttgaagccagtgttgctcttatccatcagagtcacacaagtataatatttgggatagcctatccagttgtcgtcaactcggcggcatgaaccaacactcttagtcgacgacagggtagtcttcctcctcgaatatggacttggcgagattagagatagtgctagatctcacttgatagcccccgcagcaacatattgggtttgtctaggttcatcttcgatgtcgttatctggcggcgtgtatttgtgtctattctggctgagcgtgttgatctgtcttggcttgtcttggtccgtgtcctctctctcctcctaggggtcttgtatttatacccacagatattctcttgtccaagtagtactagaaagacaaatatggatgcgatccaagtagtccctgtagtttccatgtagaactatgcttctcctctcttatccggagcacattccgtatgcgaggcatgattccgtatatgacttgctacatagtgagtcctgccgagcataacccaagactattgggtatgtcttacccataacactgtagttttgtacgaagttattttcatgttttttcaacctgctaaggctacttcattgatacttatgtaagggaaatcttattttctttatagtttatagaaagatacttttctggagcagaactgcaatgcactgcaaactcattgtttaggaatctgagtatacatatgttgcccagagtgacttaccttggaacatgttatatctgcaggtgtgcataattaaaaatggcacaaattttgggtggtctagtcaacattgttgtaacaccgatctataatgctatattcaaacatgcattgtatccattcaaagttaccagaaatgtggagaatctcgagaaggctacaaagaaattgattgctaaacgtgatgatgttgagaacaagattagtaacgatgagagaagcggcatgagaataaaaagtgaagcaagaagatggttggaggacgtcaataccaccatatctgaagaagcggatattaatcagaaatatgaaagcaggggaatgactttcggcggatgctccatgaattgctggtcaaactacaaaatcagcaagcgtgcatcgcagaagctccttgaagtgaaggagcattatatagctgatatgagtgtcgttggagatcaaccatcgccagaacctgttcaaaagatccctattccctgtgatcatgtaatggacaatgataacaatcttcgtgaagctctggactatatcaagaacgatccagttgggataattgggatatggggtgtaggtggagttggcaagacccatctcctgaacaagatcaacaattcatttcttggggactcttcctttcattctatcatctatgttattgcctctaaagagtgttctgtgcagaagatccaagctgagattgtcaagaaacttaacctacggaaagatgacgatgtaaaattccaagcccacatcatttctgaatttctcgacggaaaaaattttctgttattgttggatgacctctgggagaggattgatcttctggaagttggcataccaacactaggaattgaaaacaacctcaagaggaaggtggtcctcacaacaagatcacaggatgtatgtggtcaaatggaggtgaggaaacagataaaagttgcttgtttacgagatgaggaagcatggaaactatttctggagaaggtcgatgaagaaactctcccttccagttctctaattgaacttgcaaaacaagtagtgaaggaactcaagggcttgccattggctcttgtaactgtcggaagggcaatgtacgccaaaagggacccggtgctatgggagcataccattgattacatgaaaggggcatgtcgtgataaggacggtcccctctctatggaaactgttttcaggcaacttaagttcagttatgatagtttacggaatgacaccctgaaacgttgtttcttgacttgtgcattgtggccagaggatgtgttcatagctacagatgaactcgaccaatgttggatgggcttaggtctggtggacaaggatgatatacaaagttcctacagagaagcatgtaacgtaagaagtgaacttcaatctgcctgtttgttggagagctggcatacttctcgtgtaatcacaatgcatgatgtggttcgtgacatggctctatggatctgttgcggttgcagtgaaaagaacgacaactgggttgtccatgcacaagttggcaaaaatttatcaagaagaaccatcccatggagcaaagctgaatgcgtctccttgatgtggaatcgcattgaagaattgcctcccatggattcaaattattttcccgcaaaactcaggacattatgtcttcaaggcaatcgtttggatggaaggatagttgaaactcttaagaatttcactgcactcacatatctggatttatgctcgaattccctcactaacataccaggggagatatgtgccttggccaatttggagtatctcgatttgggatataattcaggaatatgcgaagtccccacctgctttagagaactcagtaagctcaaattcttgtatctgtcatgcactaacgtatggagaattccagaggatgtcatatctagccttaaagcactgcaggtcatagacttgacgccaaaacccaaaccttggaatcggtacggtaacagagaaaaccacgcggatcatatgccttcagtagtactaatccaagagttaaccaaactaagtaagttaaaagcagttggcattactgttgaaagtgtttctagttatgaagcacttaaggaatatcctaacctacctattaggagacttgttctaaatatagaggaacgagagtcagtgttctatctactgactggtcctttgtcagatcacttggctcaaatgaccttacataagttggaaatttatcgcagcagcatggaggaaataataatagagagacacgag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External Link(s)	NCBI Gene:Os09g0272900, RefSeq:Os09g0272900