Difference between revisions of "Os03g0215200"
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==Labs working on this gene== | ==Labs working on this gene== | ||
| − | + | In order to clarify the mechanism of regulating expression of Os03g0215200, the authors identified cis-acting elements required for expression of this gene in time and space. The authors found that cis-acting elements in the vein of the leaf primordia assumed regional expression located in intron 2. Next they defined in the sequence of this region of about 200bp of the region and considered to be a conservative non-coding sequence, identified by phylogenetic blotting. Furthermore, some of the known sequences DG1, including a 5 'upstream region of about 7.4 kb intron 1 and 2, Os03g0215200 is proved sufficiently to cause expression of the assumption in the vein, and to suppress the expression of leaf primordia in the other regions, however it controls the expression of different heart Pete area is not located in DG1. The author use DG1 control the expressed sequence Os03g0215200-1 precisely, and then changed the morphology of rice: the resulting transgenic plants produced a blade at the end of the vein, this location is not in the vein of the wild type, and compared with the wild-type, it formed more upward the blade (Ohmori et al., 2011). | |
==References== | ==References== | ||
Revision as of 16:51, 29 May 2014
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Contents
Annotated Information
Function
Os03g0215200 plays a regulatory role in the formation of rice carpel, flower meristem and development, while regulate the formation of rice leaf veins by promoting cell proliferation through the middle (Yamaguchi et al., 2004). In the development of plants, related genes of tissue differentiation and organ development is regulated by time and space. Os03g0215200 is a member of the family YABBY, it promotes the formation and differentiation of leaf Mahogany leather veins. Consistent with these features, Os03g0215200 initial (presumably in the vein of position) and meristem presumed carpel position expressed in the central area of the leaf primordia.
Expression
Please input expression information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
In order to clarify the mechanism of regulating expression of Os03g0215200, the authors identified cis-acting elements required for expression of this gene in time and space. The authors found that cis-acting elements in the vein of the leaf primordia assumed regional expression located in intron 2. Next they defined in the sequence of this region of about 200bp of the region and considered to be a conservative non-coding sequence, identified by phylogenetic blotting. Furthermore, some of the known sequences DG1, including a 5 'upstream region of about 7.4 kb intron 1 and 2, Os03g0215200 is proved sufficiently to cause expression of the assumption in the vein, and to suppress the expression of leaf primordia in the other regions, however it controls the expression of different heart Pete area is not located in DG1. The author use DG1 control the expressed sequence Os03g0215200-1 precisely, and then changed the morphology of rice: the resulting transgenic plants produced a blade at the end of the vein, this location is not in the vein of the wild type, and compared with the wild-type, it formed more upward the blade (Ohmori et al., 2011).
References
1. Yoshihiro Ohmori;Taiyo Toriba;Hidemitsu Nakamura;Hiroaki Ichikawa;Hiro-Yuki Hirano
Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice The Plant Journal, 2011, 65(1): 77-86
2. Haifeng Li;Wanqi Liang;Yun Hua;Lu Zhu;Changsong Yin;Jie Xu;Ludovico Dreni;Martin M. Kater;Dabing Zhang
Rice MADS6 Interacts with the Floral Homeotic Genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in Specifying Floral Organ Identities and Meristem Fate The Plant Cell, 2011, 23(7): 2536-2552
3. Haifeng Li;Wanqi Liang;Changsong Yin;Lu Zhu;Dabing Zhang
Genetic Interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in Specifying Rice Floral Organ Identities and Meristem Determinacy Plant Physiology, 2011, 156(1): 263-274
4. Takahiro Yamaguchi;Nobuhiro Nagasawa;Shinji Kawasaki;Makoto Matsuoka;Yasuo Nagato;Hiro-Yuki Hirano
The YABBY Gene DROOPING LEAF Regulates Carpel Specification and Midrib Development in Oryza sativa The Plant Cell, 2004, 16(2): 500-509
5. Nobuhiro Nagasawa;Masahiro Miyoshi;Yoshio Sano;Hikaru Satoh;Hiroyuki Hirano;Hajime Sakai;Yasuo Nagato
SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice Development, 2003, 130(4): 705-718
Structured Information
| Gene Name |
Os03g0215200 |
|---|---|
| Description |
Drooping leaf protein |
| Version |
NM_001055910.1 GI:115451548 GeneID:4332058 |
| Length |
7428 bp |
| Definition |
Oryza sativa Japonica Group Os03g0215200, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:6068581..6076008 |
| Sequence Coding Region |
6068682..6068750,6069637..6069774,6070763..6070856,6071155..6071203,6075032..6075107 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:6068581..6076008 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:6068581..6076008 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggatctcgtgtcgccgtccgagcacctgtgctacgtgcgctgcacctactgcaacaccgtgctcgcggttggagtcccatgcaagaggctgatggacaccgtgaccgtgaaatgtggccactgcaacaacctctccttcctcagcccgcggccgccgatggtgcagccgctctccccaactgatcaccccttgggcccgtttcagggaccttgcactgactgcaggaggaaccagccgctgccgctggtctcgccgacatcaaatgagggtagcccaagagcacccttcgttgtgaagcccccagagaagaaacaccgcctcccatctgcttacaaccgcttcatgagggaggaaatacagcgtatcaaagctgccaagccagatatccctcacagggaggccttcagcatggctgccaagaactgggcgaagtgcgacccccgctgctcatcgacggtttccacctccaacagcaaccccgagcccagagtagtagctgctcccattcctcatcaggagagggccaacgagcaggtggtcgagagcttcgacatcttcaagcagatggagcgcagcggctag</cdnaseq> |
| Protein Sequence |
<aaseq>MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNN LSFLSPRPPMVQPLSPTDHPLGPFQGPCTDCRRNQPLPLVSPTSNEGSPRAPFVVKPP EKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAKCDPRCSSTVSTSNSN PEPRVVAAPIPHQERANEQVVESFDIFKQMERSG</aaseq> |
| Gene Sequence |
<dnaseqindica>102..170#1057..1194#2183..2276#2575..2623#6452..6527#6728..6820#7048..7113#ccccgcaccaccgctcacacttgctcctcctcctcctcctcctccgcctcagtgctagggctagcttgcttgtcgccgtcgccgccgtcgtcgccgccgcaatggatctcgtgtcgccgtccgagcacctgtgctacgtgcgctgcacctactgcaacaccgtgctcgcggtaaactcctcgagaaaccggagcagcggcttagcttcgcatgcagagaacgatcgatatatgctgctgctagctgcagctgcaccatggccttcgttctttggttatcttttgaattggacaagagagcaaagaacaaagtgttggttctgtctcgtgatctcctgctgctgcagattgcagagagggctctcactttggtttggtccaatcctttggcttgcttaatgtgcatcatggcatatgcttactctcacacaggacacagtgagagagagctagctagatagctgggaccaaatccagcttcttgcttgctctctctgtgtcctgaggagctagctgctaagctagtggaaacttccactggggattgttcatgacacgtgattgatgtgcccttgctgtcttcctgcatggtgttttattggctagctctctttttctttcttagataaaattcattggccatagctcttgatatgatgctttgtggtagaatgttctactcagctggttctctcgcagtgtcatgttccatctttcgcttccattatatccccttctttcattgttaccagctgcaggctgcatttttaaactggacaagaatccaatttagtagtacctgcatcttctgttcttccattaaaaaacaagtactactgaatcttctcttcttccttttctttttccctctctgttttgcatatcccactttatttgcttgctccatctagattccttccacacagatatgctgttctcctctactttttctccttaaggacagtgccatgcaacaaagagatgaaattaacgaagaaagtattggcttaattgcatgatgtgattaattaatttttcgtcttttgggtagctgcaggttggagtcccatgcaagaggctgatggacaccgtgaccgtgaaatgtggccactgcaacaacctctccttcctcagcccgcggccgccgatggtgcagccgctctccccaactgatcaccccttgggcccgtttcaggtcagtcctctcctctagctaattaagctagcgtttcattcttttctctctctctttctctgaatctccttgcagttcttgatatttttcctcctctttcttcttcttcttcttcgtcgtcttgatcttcttcagttctcgtgttgctgtttctagctactttctcttttctgcatatgggtagcttcttgcgaggagaaaggctggcgataaatctttctccttatacaagaaagggaagacatataattaaagaaattattaattgcacatggagagtgggacttttttttctcatgaaatatggtttagcagagctttggggtgttcttttgttcggtttctctctcctcttttcccttctctctctagctctctgtgtcctgtctcggctttatggagccactcagaatactgtttgcaaggcaagattaaacaaagctggattgcaaaagatttctctcttgcccatctgtggcctgggaaagcctcatgctgcaaaagcggccggccagttcatcttttttttttctcaggcagcatatgctgctagcagctgctctactgtggcattcatgcctctccaaattaaacctgcatttttatttatttacttctttttttttattttggtgtggaaagatgcattcattgcctgttttccgagttgactagtatagctacttctacccaagcagggagagagagagagagagagggagagagagagagagagagagagagagagggagagagagagagagagagagagagagagagagagagagagagagagagatctgagaaaatagttaggaaatgatgattttatcatcatccaactactactactactactactactactactactactactacactgatccatgcatggcaagcgtttgagagatcttgaaatgtgctagagctggaagctagtaattaaccttggttgcttcttgtgttggatatttcttggtgttagggaccttgcactgactgcaggaggaaccagccgctgccgctggtctcgccgacatcaaatgagggtagcccaagagcacccttcgttgtgaagcgtaagtagcaaagcaactatatgcacacttcacttgctatatcatacacgtgcatatataccagctagagtagatatcaatatctttctaattaaatttcttgcttgcttactgctcatttatatcagtcattcagtctctccttagtttcttgctaattgttaactgtcttcttctgacgagtccttcactagctctctgtgtcttgtgttcacatggaatatataaatatgaacaaacagctagctagcatatcttgtgtttcctctgacaaatgtttttatgtcttccattgtagccccagagaagaaacaccgcctcccatctgcttacaaccgcttcatgaggtgagaaactatttacctatttgtccatgcatttatcttatatatatgcttgtgatccctaatatggtttgcactcatgtgatcttatatatattttttctatttgttctgagtttttttttgagggagctagtagtggttcaatattttttttatttgtcctgtactataaactctatgagatctgcacctgttttgggagaaagtttcgattttattgaaggggatttatccccttctaaaagaaggaagaatatacataaaataatttatcatccaaggtcaggacatttttatattgtaaatctcagtacactaaataaaggctactatagctagtgtaattttgtgaattgaagaatattaattaatttgtttctgttaatcaaacaaaaacactctactccagtaatttacctagctagaccattgtgcatattatggatatctagcttgtttgtcattttgtggatattttcaaaaaaaaaaagaaataaagtgcatctatggtctgactttttttagggcatcgatctatggtctgatttaaaccttgtgatagcttgggggtttatacatggatatggtgaatgaattgtatatctaaaataaataccccattttacattttttttagttgccactatatatgttcttttctttaatatattttgttcttgttgatatatagtgaagggtctctctgtttccaggcttccatgtccagctgttttatttagctgagatctctgcatataattataatgtggtcctagttattgccaatttgcattgattttatcatatctctatctctctctacatatatgtatatgttgatatacacatttaacttagtttattatttaattaacacttatttttaacaaaagtacatttatttttgtttaatttattcctttccctgttaattgctcaggttttggaacagattccaggccatgatagtaataattaataaattagtaaacacattttcctttgaaaacacatgaccaatacacatctttattttttttgacaaaatacatctttatttaattcaatgagctgggcagtacgttcatcttgattcccaaataattttataaacacaagaaaaaaaacacttatatcatagttacccatatataactattaatgcctgtgtgcatcttatatctgatgcctgcagcctatgctagatatttatttacaatatctaaagcagttatgatggttaatttgtttcaacaaaatgaaagtaaaaaaaaagagttttggtgtttcctgttcacaccaacaatcctaatattttcatacattattcctgatatttgaactaccttttgtttgtgttatagaacgtaatcatcattattttttataaataactagtcaaagattatttttcaatatttacgacaaattattacatcaatacgtacgtgttacatatattttataaacaattggatacaattatgtttaatttcttcgatataaacactaagtataaatgctactccctccggcattacaagataattgagctattgccaccaaattattacaacaaaaaataatttgtagcaatatattgtactattgcaatgataatttttctgtggtaaaaaaatatattttattgcaatgatctacaattgttgttttatttagtacttttgttgcaatagaaaatgagatatcgccacaaaaaatcttactgttgcaaaaaaaatatgttctatcgccacaattttaatttttgtggcaatttacataataatggtacttttcactactttttgttgccacaatcagcaaattcgttgcaataaaaaaattgtcgtctcataatttaacttaatttttttcatatggatacggattgagacaaattttatatggaaattatagctctcgacgagatctataattttatagttgataacttgttcatatgaaatcttttagatattcaaatcttagttaggtaggctcaaatggaacaatatacatgggttcgaatcctagccaagacactgtataaagaaattaatagataggatgatagattaatatttgaacttttaatttggtacgtagaactaatgccacatatggagtggtggcaataatttttattacaacgatatgaagtgttgcaatatgattttttgccacatccattccgtggcaacatctaaatttattaccactaaataaaaattattgcaataacctattactacactatttattaccacggctagcaacgattttaaaattgtggcaatatgtatctattgccacaattttagtattgatgccacgatttttttcgtggcaacaaataatttttctagtagtacgggttgataatacttgtcgttttggataagggcacggtcttcaaaaaaacaactttgaccattattttctatcataatatgtaaaaaaatattaacaaatatatgatcttattaaagtacttttaaagactaatctatacatgtggtcaccatatttgaaaaacaaatattttgaaaatgattcataatcaaagattttaaagtttgacctcacccttgtccaaaacgacaagtattatcagcccagagggagtatccttttctgaaattttttaactaaattaaacacacttaatttaaaagtagtttcacctaccaacctacctgctataagtaacacacacttgttgatgttaaattcctgataatgcaagccatcttgccttttaagtgttcattgttttgttgttagaaattactaacgtaactgtaaaagatggggctgttaatttgtgcgcccttgtagtataacagtttattaaaaaaactagatcattttgaataaaagacattaatttatatgtgccatcttaacgtgtacaacttatggaagtttcagcatgctcttagatgcccatccatgggatagttttaattaaattaaccgacccttccataaaatagtgggtgctataaatttaagttaatttgatactgcattgctactagattgaccatttctttaattaaatactaattgagttagtaaaccaattatttcactaaaactgaataagcctaggaccaatctatatatttttatggtgaaagttggatgcaggggaaatttcacagattcgtggaaaattaaaatgggacaatatactagcttgaacacaaataagtagtatcaaaaggtagaacatatgatatattagcaaaacaccacacatgcattattatccaatgtgtgcgagctaattattgtacatatgctaatgctactgtaatataaatcacatttagtactccctccgtcctagaatataagaagttttagagttgaacacggttattaagaaagtaggtagaagttagtggtggagggttgtgattggatgagtagtggagataggtgggaaaagtgaatggtggaagtttgtgattgattggaaagagaatgttggtggagaagttgttatattttaggataaattctaagagctgaaaattattatattttgagatggagagagtatcaattaatctttttacagacccgtacttcgatatatcatcgatgaagtaattaaccaaagggaataaaatatgcatgggacaactaaactgggatatatatgtagacaatgccagtttatatctaatcgacacaaccatatgcatatatgcattgcatgtacctacgtacgtactacactctcttctcagaaataaatctgcacatggatattttagcggatcaattaattataattaatatatgatgatgcagggaggaaatacagcgtatcaaagctgccaagccagatatccctcacagggaggccttcagcatggctgccaagaacgtaagctctactcatccccaatatctcccggcccccaatttgcatgtgataattgtgacagttattagctataatcaaccgatccatcggtctctagatctctcgcaccttgcttacacatcaattactagtacaataatattaattacttgcaccgatggagatgcaagtgtctgatgatcagctctgcatttatgcagtgggcgaagtgcgacccccgctgctcatcgacggtttccacctccaacagcaaccccgagcccagagtagtagctgctcccattcctcatcaggtgatgatcatattgacgataattaacttgccatagcaacagagacaccgatcatatatacatacacacaaaatgagagtataattaaggcagtttctctatatgatttgatttatttgatgcatggccaccacaaaacgattatgattttagatagttcttgtgtgatatgatctcaccgtggaattgttctttaattatgtgctatattattgatgttatatcaggagagggccaacgagcaggtggtcgagagcttcgacatcttcaagcagatggagcgcagcggctagggcggcggcggcggccggagccggcggcgatctatatcggcggtgaagctcgtatgaagctagctagcctgcaggccggccactggggagagtaccaaatttcagatcccccttattatcaccgtcgtcagctcagctcatgcatgcatgctcatcgttcccctttagcatatatctgtgctcgttttgtgtttattagttaattatgtttgatcttgttaatttgttgttgcatggagtatgtaccccctataagacccagctgctgctaccgtacgatatacgtacgtatgctatatatatatatatatatat</dnaseqindica> 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