|
|
| Line 20: |
Line 20: |
| | GeneName = DWARF27| | | GeneName = DWARF27| |
| | Description =| | | Description =| |
| − | Version = NC_008404.2 GI:297612483 Gene ID: 3974662| | + | Version = FJ641055.1 GI:254946545 Gene ID: 3974662| |
| − | Length = 14273 bp| | + | Length = 5390 bp| |
| | Definition = Oryza sativa Japonica Group DWARF27, complete gene.| | | Definition = Oryza sativa Japonica Group DWARF27, complete gene.| |
| − | | + | Dblink |
| − | | + | BioProject |
| − | Dblink BioProject: PRJNA122
| + | Keywords |
| − | Keywords RefSeq. | |
| | Source = Oryza sativa Japonica Group (Japanese rice) | | Source = Oryza sativa Japonica Group (Japanese rice) |
| | ORGANISM Oryza sativa Japonica Group | | ORGANISM Oryza sativa Japonica Group |
| Line 32: |
Line 31: |
| | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP | | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP |
| | clade; Ehrhartoideae; Oryzeae; Oryza. | | clade; Ehrhartoideae; Oryzeae; Oryza. |
| | + | |
| | + | Chromosome = [[:category:Indica Chromosome 1|Chromosome 1]]| |
| | + | AP = Chromosome 1:45833321..45833626| |
| | + | CDS = 45833321..45833626| |
| | + | GCID = <gbrowseImage1> |
| | + | name=IndicaChromosome01:45833321..45833626 |
| | + | source=RiceIndica01 |
| | + | preset=GeneLocation |
| | + | </gbrowseImage1>| |
| | + | GSID = <gbrowseImage2> |
| | + | name=IndicaChromosome01:45833321..45833626 |
| | + | source=RiceIndica01 |
| | + | preset=GeneLocation |
| | + | </gbrowseImage2>| |
| | + | |
| | + | |
| | FEATURES Location/Qualifiers | | FEATURES Location/Qualifiers |
| − | source 1..14273 | + | source 1..5390 |
| | /organism="Oryza sativa Japonica Group" | | /organism="Oryza sativa Japonica Group" |
| | /mol_type="genomic DNA" | | /mol_type="genomic DNA" |
| − | /cultivar="Nipponbare" | + | /cultivar="japonica" |
| | /db_xref="taxon:39947" | | /db_xref="taxon:39947" |
| | /chromosome="11" | | /chromosome="11" |
| − | gene <1..2155 | + | mRNA join(<222..525,2082..2221,2438..2530,2891..2952, |
| − | /gene="Os11g0586900" | + | 3514..3620,4977..5066,5150..>5190) |
| − | /db_xref="GeneID:4350802"
| + | /product="DWARF27" |
| − | mRNA <1522..2155
| + | CDS join(222..525,2082..2221,2438..2530,2891..2952,3514..3620, |
| − | /gene="Os11g0586900"
| + | 4977..5066,5150..5190) |
| − | /note="supported by AK071632"
| + | /note="iron-containing protein" |
| − | /transcript_id="NM_001074702.1"
| |
| − | /db_xref="GI:115486052" | |
| − | /db_xref="GeneID:4350802"
| |
| − | CDS <1522..1884 | |
| − | /gene="Os11g0586900" | |
| − | /note="Similar to ADP-ribosylation factor-like protein 5; | |
| − | contains InterPro domain(s): IPR006689, IPR001806,
| |
| − | IPR003579, IPR006688, IPR006687, IPR005225;
| |
| − | has GO asignment(s): GO:0005525, GO:0005622, GO:0006364,
| |
| − | GO:0006886, GO:0007046, GO:0007264, GO:0015031;
| |
| − | supported by AK071632"
| |
| | /codon_start=1 | | /codon_start=1 |
| − | /product="hypothetical protein" | + | /product="DWARF27" |
| − | /protein_id="NP_001068170.1" | + | /protein_id="ACT91266.1" |
| − | /db_xref="GI:115486053" | + | /db_xref="GI:254946546" |
| − | /db_xref="GeneID:4350802"
| + | /translation="METTTLVLLLPHGGAGGVRPAAAATAKRSYVMRRCCSTVRAVMA |
| − | /translation="MGAWMSRVWFLMFPAKEYKIVVVGLDNAGKTTTLYKLHLGEAVT | + | RPQEAPASAPAKKTETAAMMSTVQTETAAAPPATVYRDSWFDKLAIGYLSRNLQEASG |
| − | AAPTIGSNVEEVVFKNIRFEVWDLGGQESLRTSWATYYRGTHAVIVVIDSTDRARINI | + | LKNEKDGYESLIDAALAISRIFSLDKQSEIVTQALERALPSYILTMIKVMMPPSRFSR |
| − | IKDELFRLLQHGDLEGAVVLVFANKQDLKDAMSPAEITDALSLHSIKNHDWHIQASCA | + | EYFAAFTTIFFPWLVGPCEVMESEVEGRKEKNVVYIPKCRFLESTNCVGMCTNLCKIP |
| − | ITGEGLYDGLGWIAQKVAGKATTS" | + | CQKFIQDSLGMKVYMSPNFEDMSCEMIFGQQPPEDDPALKQPCFRTKCVAKQNHGVNC |
| − | gene complement(6689..14078)
| + | SI" |
| − | /gene="Os11g0587100" | + | |
| − | /db_xref="GeneID:4350803" | + | DNA = |
| − | mRNA complement(6689..14078)
| + | </dnaseqindica>| |
| − | /gene="Os11g0587100"
| + | 1 attcccacca caaccaagat gccctctcca tgccatttgg tctcttctct ctccctcctt |
| − | /note="supported by CI411079 and CI639876"
| + | 61 gcaaattgca tgaccctctc tctctctctc cacttctctc tataaacctt cctctctccc |
| − | /transcript_id="NM_001074703.2"
| + | 121 ataacttctt tccattttca acctacaaat atactaatct ctctctagct agtcttcacc |
| − | /db_xref="GI:297612085"
| + | 181 tacaaatctc tctctctctc tctctctctc tctctctctt catggagacc accacgcttg |
| − | /db_xref="GeneID:4350803"
| + | 241 tgctgcttct tcctcatggc ggcgccggcg gcgtacggcc ggcggcagcg gcaacggcga |
| − | CDS complement(11887..13920) | + | 301 agcgaagcta cgtgatgagg aggtgttgct cgacggtgag ggcggtcatg gcgaggccgc |
| − | /gene="Os11g0587100"
| + | 361 aagaggcgcc ggcgtcggcg ccggccaaga agacggagac ggcggcgatg atgtcgacgg |
| − | /note="Protein prenyltransferase domain containing
| + | 421 tgcagacgga gacggcggcg gcgccgccgg cgacggtgta ccgggacagc tggttcgaca |
| − | protein;
| + | 481 agctcgccat tggttacctg tccaggaacc ttcaagaagc ttctggttcg tgcctataat |
| − | contains InterPro domain(s): IPR011990, IPR002885,
| + | 541 ctactgaata tatctgatgt attgtgtgca tgtacatgca atctttcgga tgaattaatg |
| − | IPR008940;
| + | 601 aatgatcaaa tcaaccatgc atgcatatat gtgtgtattt atgatgtttt tgccatggct |
| − | has GO asignment(s): GO:0005488;
| + | 661 gatttgattt tttgagtgga agaaataaca tatatatggt gaataaacca atgttcttca |
| − | supported by CI411079 and CI639876"
| + | 721 gttatttttg tgacaattaa attatatgtg tattctacga tcatcctttt cttcttatcg |
| − | /codon_start=1
| + | 781 tttggttatt aatacccttc tcgtccatgt ggaacataaa ttctttgatt ttttttatta |
| − | /product="hypothetical protein"
| + | 841 catgttgctt tggccagcgt gggtgtactt gcaattgcat gctttctgtc atattataat |
| − | /protein_id="NP_001068171.2"
| + | 901 tgaattagct cttgattttt acatgcaaaa gaataattta tttattgagt tgctgatgat |
| − | /db_xref="GI:297612086"
| + | 961 cacgtaagcc tatgcatgtg agatgtgatg tgttctccgg cctaattaag tatcgacgta |
| − | /db_xref="GeneID:4350803"
| + | 1021 ctatatatat gcacgtacat caagtacggc cgtatttcat aatttgatta ttgttactgt |
| − | /translation="MSAAGYRYQALKEALAAAISGHDLARHHAAADHRRPHALAVVAG
| + | 1081 accagacaaa cctagtgctt aattattgac atatacccaa catcgattaa agtcagtgtg |
| − | LASNGYVASLLVSRYFRLGDAGAARNVFDAAATAAAPQKALLYNAMLRGYLAGGLPRM
| + | 1141 acacaattgg cagaagaaga taacaaaaat catagaagac atatatacca caacagtaaa |
| − | AVGIFGEMAAAACLPDRHTYHLAVAACARASEFEVGWRIGAEAAAKGFASDLLVATAL
| + | 1201 aattacagtg caaaaaggga taccagaagc ttcttaatta ggtgaatggt cacatttagt |
| − | IGMYAEAGDMGAARKVFDGMPQRDAVAWNAVIAGYARGGHLREVVELFMRMRSVDVVL
| + | 1261 agtagtaata cacagtaata acacattatt tgacgaataa attaagcgga agtgcatgat |
| − | PTEATLVTLVSGYAGFGSWEGRGMMHTIVIKLGFQLNLFVSNALLDLYVEFGCLREAV
| + | 1321 cagcagcata taagcaagca actacgagag gtcaaccgtt gatccgtgaa aatgtgaggt |
| − | MLFRQMAVKDSVTWSAMIGGLVRNGRPDSALKLFRWMVTNSTVLVTRSILLNVIMACA
| + | 1381 tcacattcta ggaatctttt agtgcttgaa tctaatcctt tcgtttgttt tcccgtggac |
| − | ELGEWREGKWVEENYVCCNGFEFKRDPSVVTALIYMYAKCGMLDSSVSLLYGVAEVRD
| + | 1441 tttttacttt gatcgaataa acttatctga ataatgcgaa ggtcaaacat cacatgtacg |
| − | DVFAWNAMIKGCGELGLVEKAVGFVVEMQKIGVDPDAITYLEILPMISSIPSLKTGME
| + | 1501 tgcccggttc ttcttctaga aattcagccg cttactataa tcgatgctgg tttttgaatt |
| − | AHAQIVRRGFLNERAIANSLVSMYGRCGSLRHSIEVFSRIVVKDVISWTSMMQVYAWN
| + | 1561 tttttaaaga catttatttt ggaacaactt aaaaaaagtg cacaaaccag ggtttaccaa |
| − | GHVNEVVKLYEVMKKTETEPNHYTFLAVLSACKNTGLVEEGMELIKYMQEKCGLKPEI
| + | 1621 accgtttgaa gtgaggttac tgccactcca tggtttggca attatcacga ggtgcgtcgt |
| − | EHISCVVDMLCRAGRLTDAYHLIKYNNSEHINNTILWGTLLSASRSCGDLVIGEAAAK
| + | 1681 ggttccaaaa actaataagg ttatcgtatg tgataaccgc gataactgac ggttttgtaa |
| − | HLLSLDPENRANSKMLADIYVLLGRRDDADNLLRVSMTRGLDIKPGCSWMEGV"
| + | 1741 accctgcaca gacaacataa ttatatttac aggactgttt ggacttcatt aacactgtag |
| − | ORIGIN
| + | 1801 catccactac atccgtcacc tccttggctc tcttacatgt ttagcaaagt caatcataca |
| − | 1 tgtcatatat gctttgagat atgaacatca tggtcaaaac atgattattt ttttatgata | + | 1861 gacaaaccag aaaagttccc aacagacaca gaatgctact tttctagtat gggtaattaa |
| − | 61 agaagaatta agctcaagag gtagagggaa aggaagaaaa atgattgagt cttaataatc | + | 1921 gcatataaga gaaacttgaa agcatacagg aaaccgatgt tcactagtcc tgagtttttt |
| − | 121 cgtagtttct tttgatatac ttgattagcc tggccccaag atagcttttg tcgctcaatc | + | 1981 tttggtgttg ttcaggtgca aattaactgc aaaggttgat tccctgaaag gaacttgtag |
| − | 181 cacctctgaa tttgttcagg acagcgagtg aggtacatag cagatgagaa ttgtgtgttg | + | 2041 cacttgctga ctgacacgaa catgcatgca atgtaatgca gggctaaaga atgaaaagga |
| − | 241 ttgtaaggca tatccggtag ccgcggtttg cttcatctag tctagtggta ttccatcaag | + | 2101 tggctacgag agcctgatag atgccgccct agccatctca agaatcttca gtctggataa |
| − | 301 ataaactgta attccttttt gctgtttcat cattgctctt tttccggtat tgttaaggac | + | 2161 acaaagcgag attgtgaccc aagctcttga aagagcactt ccaagctaca tcctcacaat |
| − | 361 tggattcacc ctgtaaaaac catgttcatc tctagtttta gacttaaatc attttgggtg | + | 2221 ggtaagtacc ataatccatg acaattggca atcatgtatg aattattgaa atttaaaaaa |
| − | 421 tttatgaatg agcaaatgtt catcctttta cctcatagga tatagagatt ggctcaacat | + | 2281 cctaaaactt ttttttattt gaacaggaag taaaattcag catttattct ctcttttttt |
| − | 481 agtactctac actacccaag tagcagcatg tcatttctta aggacaacag gccaattacc | + | 2341 tttgaggaaa atacagaact tctgtaaagg gaggaaactt taaaagttct cttcttttat |
| − | 541 ctgttggacc aataaaagaa ttgggctttt catatacact ctgagaaatg taacatgtat | + | 2401 ttcttacctc aactttgatt gagaattctg tcggcagatc aaggtgatga tgccaccttc |
| − | 601 actaggagtg aagccattgt ggattccaaa cttacactgg gacaaaccat ctttcctgtc | + | 2461 aagattttcc agggagtact ttgctgcatt caccacgata ttttttcctt ggttggttgg |
| − | 661 ctataagaaa gagctaagca ctatcaaggt ccatctaagg caaagtaaca aacaattaaa | + | 2521 gccgtgtgag gtatatatta catacacagt tcctcctttt gttacttcag ttcagaaagg |
| − | 721 caaaaatcga tatgcgtcat tgtcaataaa atgttgcctg gtactttctt gtaataattg | + | 2581 aatagctgcc tgatacctga ttagtgcgtc ttcacaagaa tgaattcatg attgtgcctc |
| − | 781 ttgtaaggaa tggcatgctg cattcacatt ttttttctgg gttcagtctt tgttgtcgcc | + | 2641 tgctgaaggt agccctgcag aatgaattga tacgaagcca cacgttaatt tgagaaatat |
| − | 841 tttattcctg gctccaggta ggtgtaatca gatagatcaa agatatacct ttctttaaag | + | 2701 tgctacagaa gatcttaaaa tgctgttgaa tgtaggttgc gacatataat atctctttgt |
| − | 901 aaaagaagag aactctgtat gcaattaatc gatggtgtag tttagtaacc agttgagtga | + | 2761 tttcaggaca ttacattgtt taaagtagtt gtacgaagca tttgtggtgc aaatatcata |
| − | 961 accaacacag gaagctatcg aaatgtatcc ctttgcttta agagtttgca tgctattgtt | + | 2821 taaagtatgg aataaatgcc cttgtatgga taacttgtct tctgagtgat cattctgtca |
| − | 1021 gatacctttc ggctttgtaa gtttgcatgt atattcttgt tcttccatag tctagtttcc | + | 2881 ttgaacaaag gttatggaat ctgaagttga aggaaggaaa gagaaaaacg tggtatatat |
| − | 1081 atcacagatt caccgtacat gttgctgtat ttgtacagca aaatcacata ataacatttt | + | 2941 ccccaaatgc aggtaattca atcatcatca agaaattgtt tcacaagttt gactaggagg |
| − | 1141 tatttgcctg cagtcctgca cagtatactg atacaagcgc tacgatgttt gcatttccat | + | 3001 aacatttgta aagaaaattt cttcaactgc tgggtatcac gtaacatatc ggtcaaacgg |
| − | 1201 gttttcttga taaggcttat aatacctcac atgctactgt aggctttctc aaaaggaaag | + | 3061 tttcctactc ccagctcttc ataggcagac tacaaaaatt ttcaggtcta taagtagtaa |
| − | 1261 gtagctgctt agtgttttca gactttcagt tagtcaccca aatacccaat acttgtcaga | + | 3121 cctgatgatt tgcaattaac atatgactct gcagccatca attagttctg aatgaattgt |
| − | 1321 aatcacagag acatgaaatt cacttctttc ctggaacaat cttctgtggc ttgcttgaat | + | 3181 tgcagtatgt caactcttac tcaagttaat ccactcatga aaaacaaatt gaagaactat |
| − | 1381 cctgattcca tatatctaat atcatgttac ttatcgacaa atattttttt catgccacat | + | 3241 ggctgggaca caagttgtat tgtcaacgtc gtaattgtgg caactgacaa tcctactcac |
| − | 1441 aatttattta ccatattgtc aatcttctgg gacatttttt ccatgccagt gttattgata | + | 3301 actccacaag ctgcttatta tcaattctac ccacgttaga caaactacca tgattaacac |
| − | 1501 ctgaaattct tattgaacca ggtgtgggat ttaggaggac aagagagtct acggacttcg | + | 3361 tgggttaaga aaaaaataga attttaagtg cagatatatc aataaatact gaagaaccac |
| − | 1561 tgggcaacat actacagagg aacccatgct gtcatcgttg taattgacag cacagaccgt | + | 3421 cttaaaaata cataaatact gaagaacagg atttctactg gtgttgctgt ttttcttttc |
| − | 1621 gctcggatca acattatcaa ggatgagctc ttccggctgc ttcagcatgg ggacctcgag | + | 3481 ttttttttta atctccaatc ctatttgtgg cagatttctg gaaagtacaa attgtgttgg |
| − | 1681 ggcgcagtag tcctcgtgtt cgcaaacaag caggatctca aggacgccat gtcgccagct | + | 3541 tatgtgcaca aacctttgca agattccatg ccagaagttc atccaagatt cacttggcat |
| − | 1741 gagatcaccg acgctctctc cctccacagc ataaagaacc acgattggca catacaggcc | + | 3601 gaaggtctac atgtctccca gtaagcttcc tctgctctga ttcatcagga aagcctgaat |
| − | 1801 tcatgcgcga tcaccggtga gggcctctac gacgggctcg gctggatagc tcagaaagtc | + | 3661 atcagtgggt aaacacaaca acttaaatat aatttggtag aataaggtaa aaataatcaa |
| − | 1861 gccggcaagg ccacaacaag ctgacccata gcgcctgtat ttccatggat ttgttggagc | + | 3721 actccattcc tttgcataaa gttggcaaga aactaataat ggattgtcat atcaacatca |
| − | 1921 tggcaggttg tgtttgttat tgctgctgct gctgctacca cttcagtgtt tatttatgtc | + | 3781 tctcaaagtt gaaaatttgg gttgaaacct ggtgtgcctc taacttctca ggacattgac |
| − | 1981 tcacatgtct gaaaaaaacc atgtctgtat tccctaccaa tctgaaatat aaaagatcaa | + | 3841 ctaattttac tatagcggat cattatacgg actgccgcta aaacataagt gaactcaaaa |
| − | 2041 atttgtgcgc aatcaactac aagttgctcc attttttttc tcatattctc tgatgatata | + | 3901 tatcaacttt cgactttaag cagaattagt gaagtaaagt tgaatcaatg taataggtcc |
| − | 2101 cacacatcat tttcctgtgc gcaattcttg aaattcagag ttttgatatt tctgcatata | + | 3961 atagaccacc aacggtttag agctatgaga aatacagaac ttaatttgac atattaattt |
| − | 2161 ctccttgaaa gttttcttat gcgcaattct tgaaattcag agttttgata tttctgcata | + | 4021 catgccacct ctacctaccg acaatctgag gactgtgccc tttttgggta tgggaaccac |
| − | 2221 ctcctcaaaa gctttttata aagtgaactg catttctttt agtgcggcga catgtcacct | + | 4081 tggccaccat tcaggaaaca gaaagggctg aagtggggcc aacatgtttg caggttacta |
| − | 2281 ccaggtggta ctgtggtgta ctaacttgtt cttctgtcct ggccactttg gatttgcagg | + | 4141 cctccgtttt ttaatttata acgtcgatga ctttttagat atatatgatc attcgtctta |
| − | 2341 atgcagaatt gcaaaatgct ggccgagcaa gcaagcaatg ctgagcctac cttcgctcac | + | 4201 ttcaaaaaaa aatgcaatta tcatttattt tattgtgact taatttatca tcaaatgttc |
| − | 2401 tggccgggag cgttgctgca cggaagagga tccttactta tttctctcca actcttattt | + | 4261 tttaagcatg acttaaattt tttttatatt tgcacaataa ttttgaataa gatgaatggt |
| − | 2461 actttcctct gactttaagt tacttacatg tgggcttgtt ggatagagga ttagagaact | + | 4321 caaatgtttg tcaaaaagtc aacaacgtca tacattaaaa aacggaggga gtacaaagca |
| − | 2521 catatttact ttcctctaac tttgagttac tgacatgtgg gctcgttgga tagaggatta | + | 4381 atcacaagca agttgtacag aagaagaaag tgctagcccc tacttgtcat tcttagtggg |
| − | 2581 gagggtccat attttagtga ctcgcgtcaa agggggagta tttcaatccg ttgctgcacg | + | 4441 aaacggcaaa ttgcatggac aagttgtgga acagtagtgt gaaatccaga aatccacaat |
| − | 2641 cattgttttc gtttgcagta caaacgaaat gcagctgccg acggttgcct ctgataagat | + | 4501 gtagtgctgt gaaaatacag tacaagcacc ttcacatggc agtgacgagc cagcatgtct |
| − | 2701 gccactatca gaattgatga tggcaatagc atatttgtgt aatgctccca gattgtccca | + | 4561 cgataatcag agcaatatgg ttcaatttca cttatgagaa gcactagttt tgaatgttag |
| − | 2761 actttttcgc aaactattct attgtttttt cttttcctat tacccgaaag acgcgcatac | + | 4621 tcttctatgg tgatacactg aatatttcaa catcaatcat tttttctagg tcaaaagata |
| − | 2821 aacacttgct tgaaaagatg gaggttaatg gtaaatctct tatttggcta aatatctaat | + | 4681 ctgatatttt atgacatcac cccacagaat cagatatcaa cctctgttgg aatttgcaag |
| − | 2881 aaaaactcat atttatgcgt aagattgtag gcactaaaat ttaaaccaga gtggaaccat | + | 4741 gctctctttc ctttttatcc tgtcgagtgg ttagatctag gagtaagcaa tgaatgttat |
| − | 2941 acattgcttt tccaaacttt ttttttgaag acattgaact tttccaaact gttttgtttt | + | 4801 ttactgccag tgctactaaa tagtcctata cagcttattt ccaattaagc aagaaggttt |
| − | 3001 cggctaattg tgttgagatt ttcttctttt ggattggaag acacgtctaa gagaatttta | + | 4861 tttccaatac taggtcaata aaaacgagaa taaagcagag tccctaaaga taatagtgaa |
| − | 3061 gagtctagcg gcgacggctt acaagaaaga aaaaaaaagc tcctcgaagc atccacataa | + | 4921 tgtatcaaga gaaatgtaac ataattactt acatcaacta tatatttatt cttcagattt |
| − | 3121 tctaatctgt cggttactgc agatcggacg gtcaaaaacg gcctaacgag acactgtgca | + | 4981 tgaagacatg agctgtgaga tgatatttgg acagcaacct cctgaagatg accctgcatt |
| − | 3181 ctgcagatga tctgtttccc tcttaccagg tgctatacag aaattactgt ttgatgatag | + | 5041 gaagcagcca tgcttccgga caaaatgtaa ggaattccgc actgaggcac cttcatggat |
| − | 3241 cttcgtttgc acctatgtcc aaatgatagt atttcacatt atttaaaaca attgaagtgt | + | 5101 tcaatcaaca ctcctctata ttcatacttt ttacttcgtg tatatgcagg cgtcgcaaag |
| − | 3301 ttatattgaa atactccatc catcggttca caattgtagt aagacaattg acaagaatga | + | 5161 cagaatcatg gtgtgaattg ctccatctga tctgaaagaa attatcaata gatagatttc |
| − | 3361 ctctattaag actaagaaca ttggtaatgt gaagtcgata ccatattgaa gaaaaaaaat | + | 5221 aaatcagtaa aatgccttaa gctccatttc ctttattcct ttggaaaaaa aattagcacc |
| − | 3421 gccgatgcca tgccatggca tgagagcttt tttttttttt ttcacagaca ttttcataga | + | 5281 atcattgttt ttgcccacaa caccagcatg tttggaacat acactcttca ttgtaatcca |
| − | 3481 aaatgtggtg gcaaaattca aataacgcgg ggagagtgaa actatttgtg gaacaaagtt | + | 5341 aaagtaatct aagaggaaat gaaaggccca acagtaacca ttttaaggta </dnaseqindica>| |
| − | 3541 taattagggt taacttttca gaggggaaaa aatgtaactc attaataatt ttgccactat | + | |
| − | 3601 aattttactg ttcgctcatt tcagtcgcta aaaattagtg ctagtccaaa ttaaatccca | + | |
| − | 3661 atagatagat agtgcaattt gatttattat aataaaacta aactatatgg cattatatcc | |
| − | 3721 agatggttca gaccaagttg gtactgttca acttaatgaa actaggaata aactatgata | |
| − | 3781 ctataacttc gagatagttc agacagactt ggagcgaatt aactaagaat atacttgaga | |
| − | 3841 cttgagagtg aacaaagctt tgtcttacta gtgagattat agttagttac gcgattatct | |
| − | 3901 tggacgacac tgattaatac ttcattccaa gttgacacaa gattggataa aaaaaactca | |
| − | 3961 ctccatgtag agaatgttaa ttaaaatatc taaccaagct gcctggatct tttcgccagc | |
| − | 4021 tgaccaatta aaagaaggaa gcatcaataa aaaccaaagc ccattagaga tggacagctc | |
| − | 4081 cttgtccata tatatactcc ctctgtactc gtaaaaggaa gtcgttttga acagtgacac | |
| − | 4141 ggtctccaaa atataacttt gacttcttgt ttttataaaa atatttatta aaaagtgata | |
| − | 4201 tatgtatact tttatgaaag tatttttcaa gaaaaatcta ttcatataat tttcacattt | |
| − | 4261 tcaaactcaa caacttgaga gttatttatt atttatattc ctaaggtttg acttaaacat | |
| − | 4321 tgttctaaac gatttctttt acgagtacgg agtactgagg gggtatattc caattagcta | |
| − | 4381 tcaacatact aattaactat caaccttaat aaaaacataa ttattagaca ctttgattcc | |
| − | 4441 ttattcccac cacaaccaag atgccctctc catgccattt ggtctcttct ctctccctcc | |
| − | 4501 ttgcaaattg catgaccctc tctctctctc tccacttctc tctataaacc ttcctctctc | |
| − | 4561 ccataacttc tttccatttt caacctacaa atatactaat ctctctctag ctagtcttca | |
| − | 4621 cctacaaatc tctctctctc tctctctctc tctctctctc ttcatggaga ccaccacgct | |
| − | 4681 tgtgctgctt cttcctcatg gcggcgccgg cggcgtacgg ccggcggcag cggcaacggc | |
| − | 4741 gaagcgaagc tacgtgatga ggaggtgttg ctcgacggtg agggcggtca tggcgaggcc | |
| − | 4801 gcaagaggcg ccggcgtcgg cgccggccaa gaagacggag acggcggcga tgatgtcgac | |
| − | 4861 ggtgcagacg gagacggcgg cggcgccgcc ggcgacggtg taccgggaca gctggttcga | |
| − | 4921 caagctcgcc attggttacc tgtccaggaa ccttcaagaa gcttctggtt cgtgcctata | |
| − | 4981 atctactgaa tatatctgat gtattgtgtg catgtacatg caatctttcg gatgaattaa | |
| − | 5041 tgaatgatca aatcaaccat gcatgcatat atgtgtgtat ttatgatgtt tttgccatgg | |
| − | 5101 ctgatttgat tttttgagtg gaagaaataa catatatatg gtgaataaac caatgttctt | |
| − | 5161 cagttatttt tgtgacaatt aaattatatg tgtattctac gatcatcctt ttcttcttat | |
| − | 5221 cgtttggtta ttaataccct tctcgtccat gtggaacata aattctttga ttttttttat | |
| − | 5281 tacatgttgc tttggccagc gtgggtgtac ttgcaattgc atgctttctg tcatattata | |
| − | 5341 attgaattag ctcttgattt ttacatgcaa aagaataatt tatttattga gttgctgatg | |
| − | 5401 atcacgtaag cctatgcatg tgagatgtga tgtgttctcc ggcctaatta agtatcgacg
| |
| − | 5461 tactatatat atgcacgtac atcaagtacg gccgtatttc ataatttgat tattgttact
| |
| − | 5521 gtaccagaca aacctagtgc ttaattattg acatataccc aacatcgatt aaagtcagtg
| |
| − | 5581 tgacacaatt ggcagaagaa gataacaaaa atcatagaag acatatatac cacaacagta
| |
| − | 5641 aaaattacag tgcaaaaagg gataccagaa gcttcttaat taggtgaatg gtcacattta
| |
| − | 5701 gtagtagtaa tacacagtaa taacacatta tttgacgaat aaattaagcg gaagtgcatg
| |
| − | 5761 atcagcagca tataagcaag caactacgag aggtcaaccg ttgatccgtg aaaatgtgag
| |
| − | 5821 gttcacattc taggaatctt ttagtgcttg aatctaatcc tttcgtttgt tttcccgtgg
| |
| − | 5881 actttttact ttgatcgaat aaacttatct gaataatgcg aaggtcaaac atcacatgta
| |
| − | 5941 cgtgcccggt tcttcttcta gaaattcagc cgcttactat aatcgatgct ggtttttgaa
| |
| − | 6001 tttttttaaa gacatttatt ttggaacaac ttaaaaaaag tgcacaaacc agggtttacc
| |
| − | 6061 aaaccgtttg aagtgaggtt actgccactc catggtttgg caattatcac gaggtgcgtc
| |
| − | 6121 gtggttccaa aaactaataa ggttatcgta tgtgataacc gcgataactg acggttttgt
| |
| − | 6181 aaaccctgca cagacaacat aattatattt acaggactgt ttggacttca ttaacactgt
| |
| − | 6241 agcatccact acatccgtca cctccttggc tctcttacat gtttagcaaa gtcaatcata
| |
| − | 6301 cagacaaacc agaaaagttc ccaacagaca cagaatgcta cttttctagt atgggtaatt
| |
| − | 6361 aagcatataa gagaaacttg aaagcataca ggaaaccgat gttcactagt cctgagtttt
| |
| − | 6421 tttttggtgt tgttcaggtg caaattaact gcaaaggttg attccctgaa aggaacttgt
| |
| − | 6481 agcacttgct gactgacacg aacatgcatg caatgtaatg cagggctaaa gaatgaaaag
| |
| − | 6541 gatggctacg agagcctgat agatgccgcc ctagccatct caagaatctt cagtctggat
| |
| − | 6601 aaacaaagcg agattgtgac ccaagctctt gaaagagcac ttccaagcta catcctcaca
| |
| − | 6661 atggtaagta ccataatcca tgacaattgg caatcatgta tgaattattg aaatttaaaa
| |
| − | 6721 aacctaaaac ttttttttat ttgaacagga agtaaaattc agcatttatt ctctcttttt
| |
| − | 6781 tttttgagga aaatacagaa cttctgtaaa gggaggaaac tttaaaagtt ctcttctttt
| |
| − | 6841 atttcttacc tcaactttga ttgagaattc tgtcggcaga tcaaggtgat gatgccacct
| |
| − | 6901 tcaagatttt ccagggagta ctttgctgca ttcaccacga tattttttcc ttggttggtt
| |
| − | 6961 gggccgtgtg aggtatatat tacatacaca gttcctcctt ttgttacttc agttcagaaa
| |
| − | 7021 ggaatagctg cctgatacct gattagtgcg tcttcacaag aatgaattca tgattgtgcc
| |
| − | 7081 tctgctgaag gtagccctgc agaatgaatt gatacgaagc cacacgttaa tttgagaaat
| |
| − | 7141 attgctacag aagatcttaa aatgctgttg aatgtaggtt gcgacatata atatctcttt
| |
| − | 7201 gttttcagga cattacattg tttaaagtag ttgtacgaag catttgtggt gcaaatatca
| |
| − | 7261 tataaagtat ggaataaatg cccttgtatg gataacttgt cttctgagtg atcattctgt
| |
| − | 7321 cattgaacaa aggttatgga atctgaagtt gaaggaagga aagagaaaaa cgtggtatat
| |
| − | 7381 atccccaaat gcaggtaatt caatcatcat caagaaattg tttcacaagt ttgactagga
| |
| − | 7441 ggaacatttg taaagaaaat ttcttcaact gctgggtatc acgtaacata tcggtcaaac
| |
| − | 7501 ggtttcctac tcccagctct tcataggcag actacaaaaa ttttcaggtc tataagtagt
| |
| − | 7561 aacctgatga tttgcaatta acatatgact ctgcagccat caattagttc tgaatgaatt
| |
| − | 7621 gttgcagtat gtcaactctt actcaagtta atccactcat gaaaaacaaa ttgaagaact
| |
| − | 7681 atggctggga cacaagttgt attgtcaacg tcgtaattgt ggcaactgac aatcctactc
| |
| − | 7741 acactccaca agctgcttat tatcaattct acccacgtta gacaaactac catgattaac
| |
| − | 7801 actgggttaa gaaaaaaata gaattttaag tgcagatata tcaataaata ctgaagaacc
| |
| − | 7861 accttaaaaa tacataaata ctgaagaaca ggatttctac tggtgttgct gtttttcttt
| |
| − | 7921 tctttttttt taatctccaa tcctatttgt ggcagatttc tggaaagtac aaattgtgtt
| |
| − | 7981 ggtatgtgca caaacctttg caagattcca tgccagaagt tcatccaaga ttcacttggc
| |
| − | 8041 atgaaggtct acatgtctcc cagtaagctt cctctgctct gattcatcag gaaagcctga
| |
| − | 8101 atatcagtgg gtaaacacaa caacttaaat ataatttggt agaataaggt aaaaataatc
| |
| − | 8161 aaactccatt cctttgcata aagttggcaa gaaactaata atggattgtc atatcaacat
| |
| − | 8221 catctcaaag ttgaaaattt gggttgaaac ctggtgtgcc tctaacttct caggacattg
| |
| − | 8281 acctaatttt actatagcgg atcattatac ggactgccgc taaaacataa gtgaactcaa
| |
| − | 8341 aatatcaact ttcgacttta agcagaatta gtgaagtaaa gttgaatcaa tgtaataggt
| |
| − | 8401 ccatagacca ccaacggttt agagctatga gaaatacaga acttaatttg acatattaat
| |
| − | 8461 ttcatgccac ctctacctac cgacaatctg aggactgtgc cctttttggg tatgggaacc
| |
| − | 8521 actggccacc attcaggaaa cagaaagggc tgaagtgggg ccaacatgtt tgcaggttac
| |
| − | 8581 tacctccgtt ttttaattta taacgtcgat gactttttag atatatatga tcattcgtct
| |
| − | 8641 tattcaaaaa aaaatgcaat tatcatttat tttattgtga cttaatttat catcaaatgt
| |
| − | 8701 tctttaagca tgacttaaat tttttttata tttgcacaat aattttgaat aagatgaatg
| |
| − | 8761 gtcaaatgtt tgtcaaaaag tcaacaacgt catacattaa aaaacggagg gagtacaaag
| |
| − | 8821 caatcacaag caagttgtac agaagaagaa agtgctagcc cctacttgtc attcttagtg
| |
| − | 8881 ggaaacggca aattgcatgg acaagttgtg gaacagtagt gtgaaatcca gaaatccaca
| |
| − | 8941 atgtagtgct gtgaaaatac agtacaagca ccttcacatg gcagtgacga gccagcatgt
| |
| − | 9001 ctcgataatc agagcaatat ggttcaattt cacttatgag aagcactagt tttgaatgtt
| |
| − | 9061 agtcttctat ggtgatacac tgaatatttc aacatcaatc attttttcta ggtcaaaaga
| |
| − | 9121 tactgatatt ttatgacatc accccacaga atcagatatc aacctctgtt ggaatttgca
| |
| − | 9181 aggctctctt tcctttttat cctgtcgagt ggttagatct aggagtaagc aatgaatgtt
| |
| − | 9241 atttactgcc agtgctacta aatagtccta tacagcttat ttccaattaa gcaagaaggt
| |
| − | 9301 tttttccaat actaggtcaa taaaaacgag aataaagcag agtccctaaa gataatagtg
| |
| − | 9361 aatgtatcaa gagaaatgta acataattac ttacatcaac tatatattta ttcttcagat
| |
| − | 9421 tttgaagaca tgagctgtga gatgatattt ggacagcaac ctcctgaaga tgaccctgca
| |
| − | 9481 ttgaagcagc catgcttccg gacaaaatgt aaggaattcc gcactgaggc accttcatgg
| |
| − | 9541 attcaatcaa cactcctcta tattcatact ttttacttcg tgtatatgca ggcgtcgcaa
| |
| − | 9601 agcagaatca tggtgtgaat tgctccatct gatctgaaag aaattatcaa tagatagatt
| |
| − | 9661 tcaaatcagt aaaatgcctt aagctccatt tcctttattc ctttggaaaa aaaattagca
| |
| − | 9721 ccatcattgt ttttgcccac aacaccagca tgtttggaac atacactctt cattgtaatc
| |
| − | 9781 caaaagtaat ctaagaggaa atgaaaggcc caacagtaac cattttaagg tacatctact
| |
| − | 9841 ccatatgttg ttaaaagagg aattgaagag cattgaaagc ggggcatgga gttgccgatt
| |
| − | 9901 tcaaaaagtt ctaatgttaa tcagataaat taaatcgatg caccccttgc agagacatat
| |
| − | 9961 tctatttatt actgtaattg tagaaaattt cagttaatta cagaaagatg tgagtggaaa
| |
| − | 10021 ccaagtacta tttcatggac gaaaattata atgcacggat tcctctaaaa gaatttattt
| |
| − | 10081 taaaactcta actgatataa ctctcgatcc actatcagtt attaggggaa atattctatt
| |
| − | 10141 tgtcactaag tattttgagg aaaatagaat tctatatatg tatatggctg tctatgcact
| |
| − | 10201 gtctcatcca cccaatgtgc taaaagattt gagcagggac attgaaatta ttagagatgg
| |
| − | 10261 caatttttaa agtttgcatg actatcgagg catatgggac atataggaca gtgcctaact
| |
| − | 10321 cataaatata tgtcagaaaa ccattctcca cactacatca ggatattagt atgaaatggg
| |
| − | 10381 gaaactgaac atatctacat gtacttctca tcagcttgca ttttgtacaa aaaaaaaacc
| |
| − | 10441 aaaaccaaga ttgcaatgcc agacctgcgg gatttttaag ttggaaaaga aaatgattca
| |
| − | 10501 gcacctccag agaggtccat ggttctagca aataccaaaa gaaagtagct atctcacata
| |
| − | 10561 ttgattctgg agacattggt acaccaatta tgacagactt gaccaaaatt gtataaagta
| |
| − | 10621 acacaacttt aacatattgt agaaaaaaaa tagttgggat ctaccacact gatgaaacca
| |
| − | 10681 ctttttgaga cctagagcac ttacaggata aattcacata aagaattcaa atgtcacaac
| |
| − | 10741 aaaatcatga cagggataac cattgctact gacaagggga tcgtgcgcca cattactgtt
| |
| − | 10801 ctttgtctcc tgatgcatga tcgtttccgt agctctactg gctttagttt attcttcaca
| |
| − | 10861 agatttccgc attattgttc tttgtctcct gatgcatgat ctgttttcat aactctattg
| |
| − | 10921 ggtattggct ttagttgttc tccaaaagat tcagataagg tcctgactga atgtactaca
| |
| − | 10981 taactatagt ctccattagg attgctggtt cagtataaca aatggtgtac gcagaattca
| |
| − | 11041 acaaccattg agaaggccag tttttatcgc tagttcctga aattctagaa atagtcctgt
| |
| − | 11101 attccaaatg gggctaaaag taaggaaatt ctatgttgtt aacaaagaca atagcctaac
| |
| − | 11161 cccaagtaag ttggaggtta gagatgaaac ccaagccaag ccacatccta catgaatgtc
| |
| − | 11221 attacaagtg caaatctaat gaagctccag gttgtcccag ttttatattg tacaagataa
| |
| − | 11281 tctgcacgaa tcatgatatt tgattgtaaa aaggaaaacc taatacttca aagtcagttc
| |
| − | 11341 aagaacgatg caaatatgtg cagtactttt tgcaaattag cttattgaaa gaacgattta
| |
| − | 11401 acaaataaga aacaggagaa acacaacatt cctagctgtt cacttttgca tgatattcaa
| |
| − | 11461 ctaggagcct tgtggggtgg tggtgccatt ttgcaagtga tacacttagt atggcaccta
| |
| − | 11521 gctaatttcc aaccttatat acaataatca ggtcaaggcc tcactaggct tcaaaaatgt
| |
| − | 11581 tagaacctct gcagaaatat cttactatat attgatactt taaaaaattg caatcttgaa
| |
| − | 11641 aagaaactgt aaacacaaat gtatggtatt ggtaccaaca agaccaactt gaaagccccc
| |
| − | 11701 aacttttccc acatcaattc tttttttgca acattacaga tttctcaaag aaacaaaagt
| |
| − | 11761 aaattacaga aatgcaaaac atctaagaga ataatatcaa accatgcata aaattgagaa
| |
| − | 11821 ataaagtggc ttaatcatat ttaattatac cttctacatg tattgcaatt tgcaagcttt
| |
| − | 11881 agacagttag acaccttcca tccagctgca gcctggtttt atgtccaatc ctcttgtcat
| |
| − | 11941 cgatactctt aggagattgt cagcgtcatc ccttctccca agcaagacat aaatatcagc
| |
| − | 12001 aagcatctta gagttggccc tattttctgg atcaagagat aagagatgtt tggctgctgc
| |
| − | 12061 ttctccgatc accaaatctc cacatgaacg ggaagcgctt agcagcgtcc cccacaatat
| |
| − | 12121 tgtattgtta atgtgttcag aattattata tttaataagg tggtatgcat cagtcaaacg
| |
| − | 12181 tcctgcacgg cagagcatat caacaacaca agaaatatgc tcaatttctg gttttaggcc
| |
| − | 12241 acacttctct tgcatgtact tgatcaattc cattccttcc tcaacaagac ctgtgttttt
| |
| − | 12301 acatgcagat agtacagcaa gaaaagtgta gtggtttggt tctgtttctg ttttcttcat
| |
| − | 12361 cacctcataa agtttaacaa cttcattaac atgtccattc cacgcatata cctgcatcat
| |
| − | 12421 agacgtccaa gagattacat ccttgaccac aatcctgcta aagacttcaa ttgaatgcct
| |
| − | 12481 aaggctcccg catcgaccat acatgctaac aagtgagtta gcaattgccc tttcattcag
| |
| − | 12541 gaaacctctt ctgacaatct gagcgtgtgc ttccatccct gttttcagtg atggaattga
| |
| − | 12601 tgagatcata ggtaggatct ccaagtatgt aatagcatct ggatcaacgc ctatcttctg
| |
| − | 12661 catttctact acaaatccaa ctgccttttc cactagtcca agctctccac accctttgat
| |
| − | 12721 catagcgttc catgcaaata catcatctct aacttctgca accccatata gaagactgac
| |
| − | 12781 tgatgaatct aacattccgc actttgcata catgtatatt aacgctgtta ccacagatgg
| |
| − | 12841 atctctcttg aattcaaaac cattgcagca cacatagttc tcttcaaccc attttccttc
| |
| − | 12901 tctccactcc cccaactcag cgcaggccat aatcacattg agcaaaatag acctagtgac
| |
| − | 12961 caaaactgtc gagtttgtca ccatccaacg gaatagctta agagcggaat ccggtcttcc
| |
| − | 13021 attccgaaca agcccaccaa tcattgcact ccaagtgaca gaatctttca ccgccatctg
| |
| − | 13081 acgaaacaac atcacagcct ctctcaaaca gccaaactcg acatacagat caaggagagc
| |
| − | 13141 attggaaaca aagagattaa gctggaagcc aagcttgatt acaatggtgt gcatcatacc
| |
| − | 13201 acggccctcc caggaaccaa aacctgcata accagaaact agggtcacca gtgtcgcctc
| |
| − | 13261 agtcgggagc acaacatcca cagacctcat cctcataaac agctcgacga cctcgcgcag
| |
| − | 13321 atgtcctcca cgtgcatagc cagcaatcac cgcattccac gccacagcat cccgctgtgg
| |
| − | 13381 cattccatcg aacaccttac gagcggcgcc catatcccca gcttcagcat acatcccgat
| |
| − | 13441 cagcgccgtc gcgacgagga ggtcggacgc gaaccctttc gcagcggcct ccgccccgat
| |
| − | 13501 acgccagccg acctcgaact ccgacgcccg cgcgcacgcc gccacggcga ggtggtacgt
| |
| − | 13561 gtggcggtcg ggaaggcacg ccgccgccgc catctccccg aagatcccca ccgccatccg
| |
| − | 13621 cgggaggcca cccgcgaggt acccgcggag catggcattg tagaggagcg ccttctgcgg
| |
| − | 13681 cgccgccgcc gtcgccgcgg cgtcgaacac attgcgggcg gcgccggcgt ccccgaggcg
| |
| − | 13741 gaagtagcgg gagacgagga gggacgcgac gtagccgttg gaggcgagcc ctgctacgac
| |
| − | 13801 ggcgagcgcg tgcggcctgc ggtggtcggc ggcggcgtgg tggcgggcga ggtcgtggcc
| |
| − | 13861 ggagatggcg gcggctaggg cttccttgag cgcctggtac cggtatcccg cggcggacat
| |
| − | 13921 ccacgtcgtc tccgctaccc ctcgtcctcc tcctcctcgc cggagttccc cggcagctcg
| |
| − | 13981 ccggcgagcg gagcggcggt ggtgggggtt ctcgcggcga gggcggcgag gcactgggcg
| |
| − | 14041 gcgcggaggt gggaggaaag ggacgatact gggccgacga agagaagtgg gccgtgaccc
| |
| − | 14101 atcggaaaag catggaaggc aggaaggcct tacgtcatca tggcccagct acgtagaaaa
| |
| − | 14161 tgaagcaaaa ttgggaactc tagaatatac aaggtggggt gaaaaataaa gagcatatac
| |
| − | 14221 aaagaacttt agtttttcat gtttatgtag attttgtttc ttatattgtt aac
| |
| | Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]| | | Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]| |
| − | AP = Chromosome 11:24059905-24073377|
| |
| − | CDS = |
| |
| − | name= NC_008404.2: 24059905..24073377
| |
| | source=RiceChromosome11 | | source=RiceChromosome11 |
| | preset=GeneLocation | | preset=GeneLocation |
| | </gbrowseImage2>| | | </gbrowseImage2>| |
| | CDNA = <cdnaseq>sequence, cultivar: Nipponbare | | CDNA = <cdnaseq>sequence, cultivar: Nipponbare |
| − | | + | Link = [http://www.ncbi.nlm.nih.gov/nuccore/254946545?report=genbank]| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/297612483?report=genbank&from=24059505&to=24073777]| | |
| | }} | | }} |
| | [[Category:Genes]] | | [[Category:Genes]] |
| − | [[Category:Indica mRNA]] | + | [[Category: Japonica DNA]] |
| − | [[Category:Oryza Sativa Indica Group]] | + | [[Category:Oryza sativa Japonica Group]] |
| − | [[Category:Indica Genes]] | + | [[Category: Japonica Genes]] |
| − | [[Category:Indica Chromosome 1]] | + | [[Category:Japonica Chromosome 11]] |
| − | [[Category:Chromosome 1]] | + | [[Category:Chromosome 11]] |
