Difference between revisions of "Os04g0629300"
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Os04g0629300 is a root-specific gene. [1] | Os04g0629300 is a root-specific gene. [1] | ||
Os04g0629300 is more abundant in floral primordial, young panicles, leaves and roots than in stems and mature panicles and anthers. [1] Os04g0629300 expression was up-regulated by auxins (NAA, 2,4-D, IBA) and SA treatments. [1] | Os04g0629300 is more abundant in floral primordial, young panicles, leaves and roots than in stems and mature panicles and anthers. [1] Os04g0629300 expression was up-regulated by auxins (NAA, 2,4-D, IBA) and SA treatments. [1] | ||
| − | + | [[File:C:\Users\Administrator\Desktop\4\1.png]] | |
| + | Fig. 1. The probable cross-talk draft in which the eight genes were involved. Their regulationsin phytohormone and stress signaling | ||
| + | pathways were designated with different types of broken lines. The two Snf2 members were displayed with speckle shadows while | ||
| + | the two Ris1 subfamily genes were shown with plain shadows. The two cytokinin-category and three auxin-category phytohormones | ||
| + | were oval-shaded, respectively.[1] | ||
===Evolution=== | ===Evolution=== | ||
Revision as of 12:28, 9 June 2014
Os04g0629300 is located at Chromosome 4(32408075 to 32414942) of rice, about 6868 bps long, and it belong to SNF2 gene family, which is important to plant growth. [1]
Contents
Annotated Information
Function
Os04g0629300 belong to SNF2 gene family, [1] a kind of transcription factor, widely existed in Eukaryotes. [2] The function of SNF2 gene family protein is at a large range, for example, it is related to plant gene silencing mechanism, control plant development process, and helpful to repair some broken DNA. [2] Os04g0629300 can reduce the inhibition of 2.4-D to the root of Arabidopsis. [3]
Expression
Os04g0629300 is a root-specific gene. [1] Os04g0629300 is more abundant in floral primordial, young panicles, leaves and roots than in stems and mature panicles and anthers. [1] Os04g0629300 expression was up-regulated by auxins (NAA, 2,4-D, IBA) and SA treatments. [1] File:C:\Users\Administrator\Desktop\4\1.png Fig. 1. The probable cross-talk draft in which the eight genes were involved. Their regulationsin phytohormone and stress signaling pathways were designated with different types of broken lines. The two Snf2 members were displayed with speckle shadows while the two Ris1 subfamily genes were shown with plain shadows. The two cytokinin-category and three auxin-category phytohormones were oval-shaded, respectively.[1]
Evolution
Os04g0629300 is highly conserved. [2]
Labs working on this gene
College of Life Sciences.
References
1.Li X Y, Wang C, Nie P P, et al. Characterization and expression analysis of the SNF2 family genes in response to phytohormones and abiotic stresses in rice[J]. Biologia Plantarum, 2011, 55(4): 625-633. 2.王聪，水稻SWI2/SNF2基因家族的功能的初步研究 3.聂培培，水稻SWI2/SNF2基因家族成员Os04g0629300的功能研究
Structured Information
| Gene Name |
Os04g0629300 |
|---|---|
| Description |
DEAD/DEAH box helicase, N-terminal domain containing protein |
| Version |
NM_001060501.1 GI:115460731 GeneID:4337089 |
| Length |
6868 bp |
| Definition |
Oryza sativa Japonica Group Os04g0629300, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 4:32408075..32414942 |
| Sequence Coding Region |
32408395..32408499,32408915..32409124,32409214..32409720,32409981..32410202,32410673..32410803 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008397:32408075..32414942 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008397:32408075..32414942 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacgatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatga</cdnaseq> |
| Protein Sequence |
<aaseq>MDIIDLCSDSEEYFSPYSDTEDNLDFDDPNDGVNQVVLHNTAFG NNSSELLVGLDDDNWLNNTHALSSHRPAENRSDIIESSSGVNTDCQNSAWQYRTLPHT FMSSSYKSRPLSLTGGNNVESTHPTVKPNTVHYNGIGFPSPAIASGYKPYVSYGQGVS IDDDDDDVYEVLHQPFPFSHSSLGDKKIEEESTWKYNGFQTSSAYGIEMPTSAMSTGG VSAYGGLNSHRIFPPSVPYNNSVNNFGVNGLGTQSHLNIEKRLFGRDERVVYDEALKQ ISQETTEENLPEGVMSVSLLKHQRIALAWMVSRENSSHCSGGILADDQGLGKTISTIA LIQKERVEQSKFMSADVGSMKSVANLDEDDEVVIVMDKKQLKGESVNMLQDSTLFPSS EAASDAADLKPWASLPGSAVDRMVNAVKVEPKKKARVRPSPSSTLRSANRSTAGTLVV CPASVLRQWASELAAKVTESSKLSVLVYHGGSRTKDPTELTKYDVVVTTYTIVANEVP KQNFDEDMEEKNSETYGLCPAFSIGNKRKKDSEPKKKKKPKNSDADLDGGPLARVRWF RVVLDEAQTIKNHNTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYEPYSV YGSFRSMIKYQISRDATRGYKKLQAVLKIVLLRRTKETLIDGEPIIKLPPKTIQLSKI DFSKEERTFYMMLEEGSREKFKEYASAGTIRENFANILVLLLRLRQACDHPLLLKGKE KDLIDTGSVEVANKLPKETVINLLGQLEGDYAICSRCSDPPEDVVVATCGHVFCYQCV HKSLTSDENVCPSPSCGKKLSAQTVFSPGVLRFCIADKLESGATTSSSVEADGSPSIC ESSYISSKIRATTDILNSIVNTPALTWSDTMESSPSEVAPSKAIVFSQWTGLLDLLEL SLDSSRIKFRRLDGAMSLNLREAAVREFNTDPEVRVMLMSLKAGNLGLNMVAACHVIM IDPWWNPYAEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGE DKPGGSATRLTIDDLQYLFGI</aaseq> |
| Gene Sequence |
<dnaseqindica>6444..6548#5819..6028#5223..5729#4741..4962#4140..4270#2579..3587#2420..2494#2258..2329#1996..2171#1678..1830#1090..1585#gagagagtttttccgattcggccgccgcgcggccgtcacgaaccagataaaatctccacgcagttcccctcaaaaagaaatttggttgattttgatttgatttgattcgtgtgctccccgccgccttcgatccctccaacggataatcgccgccgacgacgacgattcggaggaggtaacttctttactactctctcttgcaagactggtttctttctttggggttattagcggttttggttcaaatggatggaatgcttttgtgagatgttttgtttcggggaggtgtgagagggttgttgcgatttgcgggagattttgattgcggcggatcatttttgaggaggagaaggcggtggctttgggcggatttcgcttaggtagggttttggtggattgggcggttttggggggaagttttaagcgatcgtgggcttgattagggttgtgcattcctgtagtcgaattgtttgattgttgtggagttggctttgccgttccttgtcgaaggcgatgcttgcgtgatggcacactcagttcatgttgtgacaattcttccttctttcaaaattttggcccttggattaatagttaatctttcatttgtgattttctttgaatagggtgctgcattttgatcaatacacttagcctaggaatgcattagtgtttacttccttaaatagttttatgtatcagtttattgcacatcactgtgcctggtttaggcaaatattgttcttgatgtaaaaaagtgttttttttaaaaaaatatttttaggtgttatttgcaacccttgtatgcaccaagttgaaattgtatttcctatctgggctattgcagtgccccttgaagaattaaaccacagttactgctgcaaattactgaatgcatcatttgttcagacttctgacttccaattcacaaattattttgcagaagatagtattcaagtgggttcatcaagataatttgtttgcagtgtgctggagatagtgtggtctgaccaggcttgttggggattagtgaagctaagcatcgcagatatctgacaacagagagttgatgcccatgtttgctagcacaatatggatattattgacttgtgttcagacagtgaagagtacttcagcccgtactcagatacagaagacaatcttgattttgacgatcccaatgatggtgttaaccaggtggttttgcacaacacagcatttggcaataatagttcagaactactagtcgggctggatgacgataactggttaaacaacactcatgctttatcctctcatagacctgctgagaatagatcagacattattgaaagcagcagcggtgtcaacactgactgtcagaatagtgcttggcaatacaggactcttccacataccttcatgagcagcagttacaagtctcgtccactttctctaacaggaggtaacaatgttgaaagtacacaccccactgtgaagcctaacactgtgcactataatggaattgggttcccttcacctgctattgcaagtggctacaagccatatgttagttatggccagggtgtttcaattgatgatgatgacggtgagtagaactatccttgattaacttgaaaagtatactgctgtaacttgcgattagtacaactaaagtttttcccttttgaaacctgtcagatgatgtctatgaggttctgcatcaaccatttccgttcagtcattcgagtttaggtgacaagaagatcgaggaagaatccacttggaagtacaatggttttcaaacaagttctgcctatggaatcgagatgcctacatctgcaatgtcaacaggttggaagctacctattaatagcaactgaaaagttaaaactgataatgatgatgttcatgtaccataattccctcaaatattctgatgggtgatcacataaaaatagttttactagtataaaatgcgatattagtaatttttttctctctgtttgaaacttgcaggtggtgtctctgcatatggaggtctaaactcacataggatctttcctccatcagtgccatacaacaattctgttaacaattttggagtcaatggccttggcactcagagccacttaaatatagaaaagaggctttttggccgtgatgagagggtggtgtatgatgaagccctgaaggtatagaatataattgtgtggtgattcaattttattgtacttactgtggattatacctttttaaaacaaaaaaatatattgtgcagcaaatcagtcaagaaacaacggaagaaaatttgcctgaaggtgttatgtcagtatcactccttaagcaccaggtaaagtttatattttgaaaatcttggttgtgtgataattctatttattctactgatcctgttcactgctatgttcttcattattgaaagagaatagcattagcttggatggtttccagggagaatagctcacattgttcaggtggaattttggcagacgatcaggttagttctattttctaccttgataactgttacttgttttactggatcccctatcttatagggacataactttatgtgacgcagggtcttgggaagacaatatcaactattgcccttatacaaaaggagagggttgagcagtctaagttcatgtctgctgatgtgggcagcatgaaatctgtagctaaccttgatgaggatgatgaagtagtgatagtcatggacaagaagcaactgaagggtgaatctgtgaatatgctacaggattcaacactgtttccatcatcagaagcagcaagtgatgccgcagatctgaagccctgggctagtctaccggggtctgctgttgatagaatggtaaatgctgtcaaagttgaacccaagaagaaggctagagtgagaccatcgccttcgtcaactttgaggtctgctaatagatcaactgcgggaacactagtggtgtgtccagccagcgttcttagacagtgggctagtgagttggctgccaaggttactgaaagttctaaattgtctgttttggtttatcatggaggttcaaggactaaagatccaactgagttgacaaaatatgatgttgttgtcaccacatacactattgtagccaatgaggtacccaaacaaaactttgatgaggatatggaggaaaagaacagcgaaacatatgggttatgtccagcattttctattggcaataaaagaaagaaagacagcgaaccaaagaagaaaaagaaacccaaaaattcagatgctgaccttgatggtggaccacttgccagagtgcgatggttcagagttgtgcttgatgaagctcaaacaataaagaatcacaatactcaagtggctagagcctgttgtggactgagagcaaaacggagatggtgtttatcaggaactcctatacaaaatacaattgatgatctgtatagttatttccgtttcttgaagtatgaaccatattctgtgtatggttcctttcgctctatgataaaataccaaatttctagagatgcaactcgtggatataagaaactccaagctgtcttgaagatagttctgttgcggcgcacaaaaggtaaaatagaaaatcatgactgcatatgtgtctgcaactttgtaccttttagttatctgctatatgaaacccacatcccattgcctctgatgcttactaattcctgacaataatcgttggtattactcacaactatgaaaatttaaaaatattgatattgattcattcattatatatgtgtgtgctggagctaatatatatgataatacgatatcatggcaaaatcaacttttacttggaaaaatgcaacctcttatcttggatctctagcattttatggaagtcatgaaatacatctgaaaatctggaatttgtgaaggtgggaaacataattgaaagagtactatctttttgggtggaatcatattgagtaccccgtaacattctgtttatttatatgttgcttgagttgatgttttcagcttcaatacttggttgcatatcttaaatttgtaagatgtgctttcagtttcagtgcatatggctgtttttttgttttcactggttctgatgttgtctaattaatctattttttggactgttcaaatacagaaacactaatcgatggagaaccaatcataaaattgccaccaaaaacgattcagctgagcaaaatagacttctcaaaagaggagcgaactttctatatgatgcttgaagaaggttctagggaaaagttcaaggtatggccacttcaattttgcctctttttttttctatcgaaaatattgcattactatgtcaactattagatcttaaatgaaaaagcgatcggcagttatggtgcatagatagatactgtccgttctctagatactcattatttgaacttagatatgctcggttttgatttattcctaactcagttgttgctgcaaggtcttagaatagcaccatatcaatactccatacattttgttttctactcttgtcttatccgatgaacacttagctgtattgtgcccacagcaattgtgaaggttttacttttaatgaacagaagccaagtttttacatttatcttcgtaagcacaagtaggtttgctagtcaatagtttaccatgttcagtgtgattacttttctttttcaaaatatttgcagtagttcagaaatttcaatgcaaaatgtttatactccatgttcatactacaggaatatgcttctgctgggacgataagagaaaattttgcaaacattcttgtattgctgctgcgacttcggcaggcttgtgaccatcctcttcttttgaagggaaaggaaaaagatttgattgatactggttctgtagaagtggcaaacaaacttcctaaggaaacagtgataaatttgcttggacagctggaaggagactatgcaatttgttccagatgcagtgtaagcaatctaatcacatactgtacatgcaaaaaaatagtattacattatcttcgaatagtttcttttatgaaaaagcaaaataaggatatcagaacaggattgtcatgtgtgtgtgattaaacaatcagtggtttaattttatctgaactgtcatgtgtgtgtgattaaacaatcagtagtttaattttatctgaactgtttgttactccatggatactaagataactacggtaatttgatttctgcgcgttttgcaggacccacctgaggatgttgttgtagcaacatgtggtcatgttttctgttatcagtgtgtgcataagagcttaacaagtgatgagaatgtctgtccctccccttcttgtgggaagaaattaagcgctcaaacagttttttcacctggagtgttaaggttttgtatagctgataaattggagtctggtgcaacaactagtagttctgtagaagcagatggctctccatcaatctgtgaaagcagttacatatcttctaagatcagggcaaccactgacatacttaactcaatcgtgaatacacctgctctaacttggagtgatactatggaatcaagtccaagtgaagtagccccttctaaggcgatagtattctcccagtggactggcttgctggacttgctggagctttcgctggatagcagccgtataaaattcagaaggcttgatggtgcaatgtctctcaacttaagagaagcagcagtgagagaattcaacactgatccagaggtacttttctgacgcccttcatctctatcttcttttttttgatgttacatgtagatggtcaacaaatataactaaatttcattcttcaggtgagagtgatgctcatgtcacttaaggctggaaatcttggtctcaacatggtagctgcttgccatgtgattatgattgatccatggtggaacccttatgctgaggaccaggcagttgatagagcacacagaattggtcagacccgtcctgtaaccgtttcccgcttaactatcaaagacacagtggaagatcggattttagctctacaggtatcattttggctgttacattttcatttcaaaagcatgagcctttcttcttttagatggtatgcacttcattagtcgtctggatgtaggatatgaactgaacatatttaacttcatcagttaaagatgcatttctacaaaatgaaaattttccattcttgcgtatactggttagcatgtatttttttcttgaaactaatatgaggtttaccttttttacaaagtagctgaaatcatgtaggcaatttcatgcattttttttcgattctctcgattgtaagggttgttaaataattggacatgctttggagctagactggtgatcaattcattttagacagtgtcaccatgcttgtgcatgttttcttttttactctccatttttgtcaacacaacttttatgttctcttgccaggagaagaagagaaagatggtccaatctgcttttggtgaggacaaacctggcggcagtgcaactcggctcaccatagatgatctccaatatctattcggaatatgagggcagctcatgatccttttgtggagctagctggtgaattttgtcgtagcaagactgacatagtcctatcagctatagctgatgacaaagccttagcaccattaatttatgcacccgatgttcctcaccatgggtgatgccatgtcttttgaattgctctgatcattggacagagagggttagttagcttttgtaattagattatgttcgccgtcgctggaatgggatgttaggaggtcttacatcagaagcagcctttttttgtgtgtatatatatatggcatgctaattttaatgttggttctctgatggaatgcatt</dnaseqindica> |
| External Link(s) |
