Difference between revisions of "Os03g0112700"
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===Evolution=== | ===Evolution=== | ||
| − | + | Ehd4 is likely a single gene,it's unique and conserved in rice,after analysis about Ehd4' sequence of many rices. | |
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==Labs working on this gene== | ==Labs working on this gene== | ||
Revision as of 00:55, 10 June 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
This gene is called Early heading date 4 (Ehd4), and it is about the flowering.Ehd4 mutants showed a never flowering phenotype under natural long-day conditions. Ehd4 may function by coding a transcriptional regulator. The transcriptional regulator can also bind to the DNA or RNA when it regulates the expression of gene. Some experiments indicate that there is an activation domain located in the middle region near the C-terminal of EHD4, it can also bind to the DNA or RNA. In addition to Ehd2 and Ehd3,Ehd4 can also promote the expression of Ehd1 by a different pathway.The expression of Ehd1 by a different pathway. It can promotes the expression of Hd3a and Rft1 by a different pathways though Ehd1.
Expression
Ehd4 most actively express in young leaves. The diurnal expression pattern is similar to that of Ehd1 under both short-day and long-day conditions.Ehd encodes a new CCCH-type zinc finger protein,which located in to the nucleus,and it can bind the nucleic acids in the nucleus.Through the qRT-PCR,It showed that it accumulates after dusk, reaching a peak at dawn, and damping rapidly thereafter under both SDs and LDs.
Evolution
Ehd4 is likely a single gene,it's unique and conserved in rice,after analysis about Ehd4' sequence of many rices.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os03g0112700 |
|---|---|
| Description |
Zinc finger, CCCH-type domain containing protein |
| Version |
NM_001055265.1 GI:115450258 GeneID:4331372 |
| Length |
2536 bp |
| Definition |
Oryza sativa Japonica Group Os03g0112700, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 3:696186..698721 |
| Sequence Coding Region |
696218..697709,697812..697945,698031..698528 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008396:696186..698721 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008396:696186..698721 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgctgagtctctcggaaagagcaccaatctgcagtccacagtcagctccttctgcgtctgcttctgatacatgcaagatggaggagaacatgaatcaacaaaaaacacttgaagctgatatatcaaacacgtcagttaatcagtctccacagtctaagattctccctgaatcttctcctgataaccaagatgctgaacatgaatatcgtagtccacctccaatatctgagagtaaagagttatccccacagtcaaggactacccctggatcttctcctgataaccaagatactgaacgtgaatatcctagcccgcctccaatatctgggagtaaagagatatccccacagtcaaggactatccttgaatcttctcctgataaccaagataatggacatgaatatcctagtccacctccgataccggagagtatagagctatctccgcattctaaggctctccctgaatcttctcctgataaccaagatattgaacctgaatgccctagtccacctcaaatacccgagagtaaagagctatctcggcagtctaagattctccctgaatcatctcctggtaaccaagatattgaacctgaatgccctagtccaccgcaaatacctgagagtaaagagctatctcagcagtctaagattctccctgaatcctctcctgataaccacgatattaaatgtgaatattccagtccaactccgatacccgagagtaaagagctatctctgcagtctaagattctccctgaatcttcttctgataaccaagatattaagtgtgaagatcctagcccaactccgatatctaagagtaaagaggtgtctccgcaatctaagattctctctgaatcttatcttgataaccaagatgttgaacgtgagtgtcctagttccattctgataactgagagtaaagagcttgctgtggacctccctggatcaatatcattagcacctgaaaaaacagcttctactgatgtaggtgaaaactcttcacttgcttttatttttccaaaatctactctggctggggatgatgctttgaaatcagtatttgatatggcaaaggcgcatttagaatgtgaagattcaaaggttaaagaagaactgtatgttgaatcaactgttgttataagagatgacatggttgttaatcctgcctctggagttgagtccatagacatgtctgaaaatctcttggaatctttgatggagcaaagttgtggaactttttacatggatggtacaacagccttagaaggttttctgtctggttcaacgaaggaagaaccgcaatgttctagccccattgctttatccacatgctctagccccattgcattatccccttggggtgaacatggctactatcaaggagattctgttggttcttctttatggggtgtccaggacgatgatccaatcggtaatatttggccattatcctcacaagcaccggctctccagtattcatctggtagcactgctcattttattgatgaagcaactgtcacccatggaaataatggagttgttctaagtagcacgccaggggaggaggtgggtttaccaaactcaggtgtttgcacagattggggattggttgagcaggtgaatccagaaacaaatgatgcatcggtatcaatgatagacaagaactcaggattagtagattctcaaccatcagcaaatgatggctcagatgtgggtactgcacggaacactaaccataatactaacttgtccctcaaccatgaaacagcggtacccttgagtagaagttctggagaagcatcaagaaaacacggatttattactgacttgaatgttgctacttcagaggaggcgttagggaacaccaagaactggaatccatatgctggtaatgctaatcggggcagccagcggaatcatcaccgtgacaggtactctcaaataagcgaatcttggcttcttagctcaaactactctaggagtaggtctgatggatttggcactggtggatcgtcgagatcaaccccaaggggacaaactcagagggggatatgtaaatttcatgagaatggctactgcaggaagggtgcatcttgtaactacctgcacccctga</cdnaseq> |
| Protein Sequence |
<aaseq>MLSLSERAPICSPQSAPSASASDTCKMEENMNQQKTLEADISNT SVNQSPQSKILPESSPDNQDAEHEYRSPPPISESKELSPQSRTTPGSSPDNQDTEREY PSPPPISGSKEISPQSRTILESSPDNQDNGHEYPSPPPIPESIELSPHSKALPESSPD NQDIEPECPSPPQIPESKELSRQSKILPESSPGNQDIEPECPSPPQIPESKELSQQSK ILPESSPDNHDIKCEYSSPTPIPESKELSLQSKILPESSSDNQDIKCEDPSPTPISKS KEVSPQSKILSESYLDNQDVERECPSSILITESKELAVDLPGSISLAPEKTASTDVGE NSSLAFIFPKSTLAGDDALKSVFDMAKAHLECEDSKVKEELYVESTVVIRDDMVVNPA SGVESIDMSENLLESLMEQSCGTFYMDGTTALEGFLSGSTKEEPQCSSPIALSTCSSP IALSPWGEHGYYQGDSVGSSLWGVQDDDPIGNIWPLSSQAPALQYSSGSTAHFIDEAT VTHGNNGVVLSSTPGEEVGLPNSGVCTDWGLVEQVNPETNDASVSMIDKNSGLVDSQP SANDGSDVGTARNTNHNTNLSLNHETAVPLSRSSGEASRKHGFITDLNVATSEEALGN TKNWNPYAGNANRGSQRNHHRDRYSQISESWLLSSNYSRSRSDGFGTGGSSRSTPRGQ TQRGICKFHENGYCRKGASCNYLHP</aaseq> |
| Gene Sequence |
<dnaseqindica>33..1524#1627..1760#1846..2343#ttgaagacagaggttcaagctcaccctctggtatgctgagtctctcggaaagagcaccaatctgcagtccacagtcagctccttctgcgtctgcttctgatacatgcaagatggaggagaacatgaatcaacaaaaaacacttgaagctgatatatcaaacacgtcagttaatcagtctccacagtctaagattctccctgaatcttctcctgataaccaagatgctgaacatgaatatcgtagtccacctccaatatctgagagtaaagagttatccccacagtcaaggactacccctggatcttctcctgataaccaagatactgaacgtgaatatcctagcccgcctccaatatctgggagtaaagagatatccccacagtcaaggactatccttgaatcttctcctgataaccaagataatggacatgaatatcctagtccacctccgataccggagagtatagagctatctccgcattctaaggctctccctgaatcttctcctgataaccaagatattgaacctgaatgccctagtccacctcaaatacccgagagtaaagagctatctcggcagtctaagattctccctgaatcatctcctggtaaccaagatattgaacctgaatgccctagtccaccgcaaatacctgagagtaaagagctatctcagcagtctaagattctccctgaatcctctcctgataaccacgatattaaatgtgaatattccagtccaactccgatacccgagagtaaagagctatctctgcagtctaagattctccctgaatcttcttctgataaccaagatattaagtgtgaagatcctagcccaactccgatatctaagagtaaagaggtgtctccgcaatctaagattctctctgaatcttatcttgataaccaagatgttgaacgtgagtgtcctagttccattctgataactgagagtaaagagcttgctgtggacctccctggatcaatatcattagcacctgaaaaaacagcttctactgatgtaggtgaaaactcttcacttgcttttatttttccaaaatctactctggctggggatgatgctttgaaatcagtatttgatatggcaaaggcgcatttagaatgtgaagattcaaaggttaaagaagaactgtatgttgaatcaactgttgttataagagatgacatggttgttaatcctgcctctggagttgagtccatagacatgtctgaaaatctcttggaatctttgatggagcaaagttgtggaactttttacatggatggtacaacagccttagaaggttttctgtctggttcaacgaaggaagaaccgcaatgttctagccccattgctttatccacatgctctagccccattgcattatccccttggggtgaacatggctactatcaaggagattctgttggttcttctttatggggtgtccaggacgatgatccaatcggtaatatttggccattatcctcacaagcaccggctctccagtattcatctggttagtctgttgatgtttagcatgcatccattagtcctaaacagtttgtggtgtttagcttacacctactaattttgcattgtaaaattctctctccagcaggtagcactgctcattttattgatgaagcaactgtcacccatggaaataatggagttgttctaagtagcacgccaggggaggaggtgggtttaccaaactcaggtgtttgcacagattggggattggttgagcaggtaatgatattccaacatcatgtcagcctttgacatttgctttgtgtatgacattccatttgacattgggttctcactacaataggtgaatccagaaacaaatgatgcatcggtatcaatgatagacaagaactcaggattagtagattctcaaccatcagcaaatgatggctcagatgtgggtactgcacggaacactaaccataatactaacttgtccctcaaccatgaaacagcggtacccttgagtagaagttctggagaagcatcaagaaaacacggatttattactgacttgaatgttgctacttcagaggaggcgttagggaacaccaagaactggaatccatatgctggtaatgctaatcggggcagccagcggaatcatcaccgtgacaggtactctcaaataagcgaatcttggcttcttagctcaaactactctaggagtaggtctgatggatttggcactggtggatcgtcgagatcaaccccaaggggacaaactcagagggggatatgtaaatttcatgagaatggctactgcaggaagggtgcatcttgtaactacctgcacccctgatctctgcaatagataacgagggtttgcattctttgcccatatcttttgacttttttgtatagcctaattacagtggtagtcaacatagagcctacacaaccttttcttggtttcattcaaccgtagcaaggacggagtatatgtctagctctagcataggaggatgactgaatgtactgcccaagcagattcc</dnaseqindica> |
| External Link(s) |
