Difference between revisions of "Os09g0482600"

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(Function)
(Expression)
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===Expression===
 
===Expression===
 +
1 gagcctacca ctacgagcag gttgcggcgg cggaggcgag cggagccgcg gtggtgcgga
 +
      61 ttgagcggcg gagccggagc cggagccgcg gtggtgcgga tcgagcggcg gcggtggccg
 +
      121 gcggggaggc gcaactggtc gccgagggga gcatggcgct tgacggtgga ggtgcggccg
 +
      181 acggcagcgc ggccagcagc cgggccacca gcccaccagg ccacggccac ttttatccaa
 +
      241 caatatggtt caatctttgg aggaaccata tcaatatttc aggcagcaat cccaataatt
 +
      301 tacggtgcct tgaagggtag atacttgctg gcactagagc tttggaatgc tagcattacg
 +
      361 atcattaact tggtgggaaa cacgacgtgg atgatctatt ctgccgtcaa taagggagtt
 +
      421 gagctgtcaa tgttaatgac taattcagtc gcttgtggac tgaacatcta ccacttgctg
 +
      481 tctatttata gacacaacaa ggaaaggaaa aaaacaattt gtcttgtaag ttttatatgc
 +
      541 atcagttttc tggtaatcct ggttttgctg gaaacaaatg tgggagacga catattgaga
 +
      601 ctgctggagc atttatttgg atcactggga aatgttatga ttgttttgtg ccatctagtt
 +
      661 cagatcaata acttgtggta ctcaactctg tcactagaaa ttcacgtttt catactgttc
 +
      721 tatgtaccaa atatactatt tgctgccagt gaattggttt tgattgtcta caagcagtac
 +
      781 agcatgaaaa tttatgtcca gctctcatac attttgaaca caatcttcta tgtgattgag
 +
      841 ctccctgtca tgattcgcgc aatgattaca aataatccag attctgacaa tgaagcaatc
 +
      901 gatatcgaga atcaagcaat tgtaaagatt gatgggcaaa agaaacatca caatgagcgt
 +
      961 caagaggaca gggcagagaa gaaaacgacc ttcacggaag tttatttgct tcctgcgccg
 +
    1021 cctgggctct ttggccaagg aaaaagaaaa cacagcgaca acgatactgc ttcaaccaaa
 +
    1081 agaagaagaa taacaatctt acaaagaaag cgacgatgga tagagctgag ggacaaggaa
 +
    1141 attcattttt caaagaggat gagaagtcat atttattcaa gatctatcaa aagaggatct
 +
    1201 ccccccacta ggaccttgca actccaaatg gattcactat ctgaagacag ttatgagcct
 +
    1261 gaatatgttg aggagcatcg cctcaaggat ctggtgaaga actctgagtt catcagctac
 +
    1321 cctatctccc tgaatgagaa aaagattgag aaggaaatct gtgatgatga ggaagtcgat
 +
    1381 gctgaagagg gaaaggttga ggatgttgat gaggagaagg aaaagaaagg ggagaagatc
 +
    1441 aatgaagtct ctcatgagtg gcattcctcg aacaagcaga aacctctctc agattcaaag
 +
    1501 gagattacta gtgagaacga ggaagctaaa gagggaaagg ttgaggatgt tgatgaggag
 +
    1561 aaggaagaga agaaaaaaca agggaagaag atcaaggaag tctgtcatga gtgcaacttg
 +
    1621 atcaacaagc aggaagccat ctggatgagg aaatcagagg tgatcaccaa ggaagcagcc
 +
    1681 ttctaaaaga gcttgacaaa cgactgggag gaacatctgg ctgtcaagca cttctctgtg
 +
    1741 gagggtcagc ttgagttcaa ggccatcctg tttgtaccca agggagcacc atttgacatc
 +
    1801 tttgacacca gaaagaagct taacaacatc aggctgtacg tacgccgggt gtttatcatg
 +
    1861 gacaactgtg aggagttgat ccctgagtgg ctcagctttg tcgagggcgt tgttgattat
 +
    1921 gaagaccttc ccctaaatat ctcatttgag ctgctgcagc agaacaagat cctgaaggtg
 +
    1981 atccgcaaga accttgtgaa gaaatgcgtc gagctgttct ttgagattgc tgagaacaag
 +
    2041 gaagactaca acaaattcta caaggccttc tccaaaaatc tcaagcttgg catccatgag
 +
    2101 gactctacca acaggacgaa gattgctgag ctcctgaggt accactccac caagagtggt
 +
    2161 gatgagttga ccagcctcaa ggactatgta gcccggatga aagagggcca gcgtgatatc
 +
    2221 tattaaatca ctggtgagag caagaaggct gttgagaact cccccttcct tgagaagctg
 +
    2281 aaggactatg aggtcctgta catggttgat gccattgatg agtacgctgt cggtcagttc
 +
    2341 atggagtttg agggcaagaa gctcatctct gccaccaaag gactgaagct tgatgagaag
 +
    2401 tttgacaatt tgagcatagt gatgaaggag gtgctcgttg acacagtgga gagggatgtt
 +
    2461 ttttctgacc gtgtggtgga ctcttcctgc tgtccagtca ctggcgagta cagctgggtt
 +
    2521 gctaacatgg agaggatcat gaaggagaat gccatcatgg acgagctacc taacaaatcc
 +
    2581 caagtgaaca aatgtgcccc aaagcaaaag gttgatatcc ttcctgtgaa ggagaatgct
 +
    2641 atcaggctcc aaagcagtga agagagagaa gttaatacta aattttctgt taccggaatc
 +
    2701 tgtggagatg gaagatgcct attccgatct atagtacatg gtgcttatat taaactaatg
 +
    2761 atgattccac ctgatgataa tcttgagaaa gatatggctg atgacttaag aaaaaaggtt
 +
    2821 tgtgatgcgt tggagaagga atgtgctgac aaaccctggc ttgttgaggt gactgccatt
 +
    2881 cctatatcaa agagatgagg aaacctcatg tgtggggagg tgagatagaa atctctatgg
 +
    2941 cgtcacatgt tttaaagatg cccatcaccg tgttcgtggt ggaaaaaact ggaggtttga
 +
    3001 gggtattcac caaatacgga aaggagtatg gacggaatgc aatacaggtt ctttttgatg
 +
    3061 gtaatggaca ttatgatgtt ctgagtttgc ggtagtccag gactgcagga cagacatttg
 +
    3121 ttcccccttt tttttttctt ccccaaatac acttgctgta aaaatgtaac cggagtttac
 +
    3181 caacaattaa aaatgttgtt ctttcct
 +
//
 +
 
===Evolution===
 
===Evolution===
 
==Labs working on this gene==
 
==Labs working on this gene==

Revision as of 13:59, 10 June 2014

I ==Annotated Information==

Annotated Information

Annotated Information

Function

In recent years, heat stresses occurred more frequently in South China (the largest rice planting area in China) during the reproductive organ developing and flowering stage. (late July to early August), resulted in severe loss of production. We initiated rice panicle microarray analysis (Agilent 22K) for the gene expression pattern under heat stress at the beginning of heading stage. We found the annotated and putative rice heat shock proteins (HSPs) gene expression was generally responded to the stress and this brought our interests to further understand the expression and responses to stresses other than heat stress. Heat shock protein was first discovered in Drosophilain 1962 and has been reported in a wide range of organisms, including plants [1]. According to their approximate molecular weights, HSPs are grouped into five families: HSP100s, HSP90s, HSP70s, HSP60s and sHSPs (small HSPs,o40 kDa). Expression profiles of nine rice heat shock protein genes (OsHSPs) were analyzed by semi-quantitative reverse transcriptase polymerase chain reaction (RT-PCR). The nine genes exhibited distinctive expression in different organs. Expression of nine OsHSP genes was affected differentially by abiotic stresses and abscisic acid (ABA). All nine OsHSP genes were induced strongly by heat shock treatment, whereas none of them were induced by cold. The transcripts of OsHSP80.2, OsHSP71.1 and OsHSP23.7 were increased during salt tress treatment. Expression of OsHSP80.2 and OsHSP24.1 genes were enhanced while treated with 10% PEG. Only OsHSP71.1 was induced by ABA while OsHSP24.1 was suppressed by ABA. These observations imply that the nine OsHSP genes may play different roles in plant development and abiotic stress responses [2].


Expression

1 gagcctacca ctacgagcag gttgcggcgg cggaggcgag cggagccgcg gtggtgcgga
      61 ttgagcggcg gagccggagc cggagccgcg gtggtgcgga tcgagcggcg gcggtggccg
     121 gcggggaggc gcaactggtc gccgagggga gcatggcgct tgacggtgga ggtgcggccg
     181 acggcagcgc ggccagcagc cgggccacca gcccaccagg ccacggccac ttttatccaa
     241 caatatggtt caatctttgg aggaaccata tcaatatttc aggcagcaat cccaataatt
     301 tacggtgcct tgaagggtag atacttgctg gcactagagc tttggaatgc tagcattacg
     361 atcattaact tggtgggaaa cacgacgtgg atgatctatt ctgccgtcaa taagggagtt
     421 gagctgtcaa tgttaatgac taattcagtc gcttgtggac tgaacatcta ccacttgctg
     481 tctatttata gacacaacaa ggaaaggaaa aaaacaattt gtcttgtaag ttttatatgc
     541 atcagttttc tggtaatcct ggttttgctg gaaacaaatg tgggagacga catattgaga
     601 ctgctggagc atttatttgg atcactggga aatgttatga ttgttttgtg ccatctagtt
     661 cagatcaata acttgtggta ctcaactctg tcactagaaa ttcacgtttt catactgttc
     721 tatgtaccaa atatactatt tgctgccagt gaattggttt tgattgtcta caagcagtac
     781 agcatgaaaa tttatgtcca gctctcatac attttgaaca caatcttcta tgtgattgag
     841 ctccctgtca tgattcgcgc aatgattaca aataatccag attctgacaa tgaagcaatc
     901 gatatcgaga atcaagcaat tgtaaagatt gatgggcaaa agaaacatca caatgagcgt
     961 caagaggaca gggcagagaa gaaaacgacc ttcacggaag tttatttgct tcctgcgccg
    1021 cctgggctct ttggccaagg aaaaagaaaa cacagcgaca acgatactgc ttcaaccaaa
    1081 agaagaagaa taacaatctt acaaagaaag cgacgatgga tagagctgag ggacaaggaa
    1141 attcattttt caaagaggat gagaagtcat atttattcaa gatctatcaa aagaggatct
    1201 ccccccacta ggaccttgca actccaaatg gattcactat ctgaagacag ttatgagcct
    1261 gaatatgttg aggagcatcg cctcaaggat ctggtgaaga actctgagtt catcagctac
    1321 cctatctccc tgaatgagaa aaagattgag aaggaaatct gtgatgatga ggaagtcgat
    1381 gctgaagagg gaaaggttga ggatgttgat gaggagaagg aaaagaaagg ggagaagatc
    1441 aatgaagtct ctcatgagtg gcattcctcg aacaagcaga aacctctctc agattcaaag
    1501 gagattacta gtgagaacga ggaagctaaa gagggaaagg ttgaggatgt tgatgaggag
    1561 aaggaagaga agaaaaaaca agggaagaag atcaaggaag tctgtcatga gtgcaacttg
    1621 atcaacaagc aggaagccat ctggatgagg aaatcagagg tgatcaccaa ggaagcagcc
    1681 ttctaaaaga gcttgacaaa cgactgggag gaacatctgg ctgtcaagca cttctctgtg
    1741 gagggtcagc ttgagttcaa ggccatcctg tttgtaccca agggagcacc atttgacatc
    1801 tttgacacca gaaagaagct taacaacatc aggctgtacg tacgccgggt gtttatcatg
    1861 gacaactgtg aggagttgat ccctgagtgg ctcagctttg tcgagggcgt tgttgattat
    1921 gaagaccttc ccctaaatat ctcatttgag ctgctgcagc agaacaagat cctgaaggtg
    1981 atccgcaaga accttgtgaa gaaatgcgtc gagctgttct ttgagattgc tgagaacaag
    2041 gaagactaca acaaattcta caaggccttc tccaaaaatc tcaagcttgg catccatgag
    2101 gactctacca acaggacgaa gattgctgag ctcctgaggt accactccac caagagtggt
    2161 gatgagttga ccagcctcaa ggactatgta gcccggatga aagagggcca gcgtgatatc
    2221 tattaaatca ctggtgagag caagaaggct gttgagaact cccccttcct tgagaagctg
    2281 aaggactatg aggtcctgta catggttgat gccattgatg agtacgctgt cggtcagttc
    2341 atggagtttg agggcaagaa gctcatctct gccaccaaag gactgaagct tgatgagaag
    2401 tttgacaatt tgagcatagt gatgaaggag gtgctcgttg acacagtgga gagggatgtt
    2461 ttttctgacc gtgtggtgga ctcttcctgc tgtccagtca ctggcgagta cagctgggtt
    2521 gctaacatgg agaggatcat gaaggagaat gccatcatgg acgagctacc taacaaatcc
    2581 caagtgaaca aatgtgcccc aaagcaaaag gttgatatcc ttcctgtgaa ggagaatgct
    2641 atcaggctcc aaagcagtga agagagagaa gttaatacta aattttctgt taccggaatc
    2701 tgtggagatg gaagatgcct attccgatct atagtacatg gtgcttatat taaactaatg
    2761 atgattccac ctgatgataa tcttgagaaa gatatggctg atgacttaag aaaaaaggtt
    2821 tgtgatgcgt tggagaagga atgtgctgac aaaccctggc ttgttgaggt gactgccatt
    2881 cctatatcaa agagatgagg aaacctcatg tgtggggagg tgagatagaa atctctatgg
    2941 cgtcacatgt tttaaagatg cccatcaccg tgttcgtggt ggaaaaaact ggaggtttga
    3001 gggtattcac caaatacgga aaggagtatg gacggaatgc aatacaggtt ctttttgatg
    3061 gtaatggaca ttatgatgtt ctgagtttgc ggtagtccag gactgcagga cagacatttg
    3121 ttcccccttt tttttttctt ccccaaatac acttgctgta aaaatgtaac cggagtttac
    3181 caacaattaa aaatgttgtt ctttcct

//

Evolution

Labs working on this gene

References

<references> [1]

[2]

Structured Information

{{JaponicaGene| GeneName = ' Rice heat shock protein gene| Description = rice blast resistance gene| Version = AK065528.1 GI:32975546| Length = 3207bp| Definition = Oryza sativa Japonica Group cDNA clone:J013031D07, full insertsequence.| Source = Oryza sativa Japonica Group

 ORGANISM  Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.

|

Expression

Evolution

Labs working on this gene

References

<references> [1]

[2]

Expression

Evolution

Labs working on this gene

References

<references> [1] [2]

[2] Jie Zou.

 Expression analysis of nine rice heat shock protein genes under abiotic stresses and ABA treatment
Journal of Plant Physiology, 2009, 166(8): 851-861.</ref>
  1. 1.0 1.1 1.2 1.3 Vierling E. The roles of heat shock proteins in plants. Annu Rev Plant Physiol Plant Mol Biol 1991;42:579–620.
  2. 2.0 2.1 2.2 2.3 2.4 Jie Zhou. Expression analysis of nine rice heat shock protein genes under abiotic stresses and ABA treatment. Journal of Plant Physiology, 2009, 166(8): 851-861. Cite error: Invalid <ref> tag; name "ref2" defined multiple times with different content