Difference between revisions of "Os04g0429100"
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| − | + | The rice '''''Os04g0429100''''' was reported as '''''SDG708''''' in 2015 <ref name="ref1" /> by researchers from China and France. | |
==Annotated Information== | ==Annotated Information== | ||
| + | ===Gene Symbol=== | ||
| + | *'''''Os04g0429100''''' '''''<=>''''' '''''SDG708''''' | ||
| + | |||
===Function=== | ===Function=== | ||
| − | + | '''''SDG708''''' is a methyltransferase that catalyses genome-wide deposition of all three methyl groups on H3K36 and is involved in many biological processes in addition to flowering promotion. | |
| + | |||
| + | ===Phenotypic analysis=== | ||
| + | *Compared with the wild-type, SDG708-knockdown rice mutants displayed a late-flowering phenotype under both long-day and short-day conditions because of the down-regulation of the key flowering regulatory genes Heading date 3a (Hd3a), RICE FLOWERING LOCUS T1(RFT1), and Early heading date 1 (Ehd1). | ||
| + | *Chromatin immunoprecipitation experiments indicated that H3K36me1, H3K36me2, and H3K36me3 levels were reduced at these loci in SDG708-deficient plants. | ||
| + | *Knockdown of '''''SDG708''''' led to misexpression of a set of functional genes and a genome-wide decrease in H3K36me1/2/3 levels during the early growth stages of rice. | ||
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You can also add sub-section(s) at will. | You can also add sub-section(s) at will. | ||
==Labs working on this gene== | ==Labs working on this gene== | ||
| − | + | *State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, International Associated Laboratory of CNRS-Fudan-HUNAU on Plant Epigenome Research, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai 200433,China *State Key Laboratory of Genetics Engineering, MOE Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai 200433, China | |
| + | *CNRS, Institut de Biologie Moleculaire des Plantes, Universite de Strasbourg, Strasbourg, France | ||
==References== | ==References== | ||
| − | + | <references> | |
| + | * <ref name="ref1"> | ||
| + | Liu B, Wei G, Shi J, Jin J, Shen T, Ni T, Shen WH, Yu Y, Dong A. SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa). New Phytol. 2016 Apr;210(2):577-88. doi:10.1111/nph.13768. Epub 2015 Dec 7. PubMed PMID: 26639303. | ||
| + | |||
| + | </ref> | ||
| + | </references> | ||
==Structured Information== | ==Structured Information== | ||
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] | ||
Revision as of 02:37, 26 May 2017
The rice Os04g0429100 was reported as SDG708 in 2015 [1] by researchers from China and France.
Contents
Annotated Information
Gene Symbol
- Os04g0429100 <=> SDG708
Function
SDG708 is a methyltransferase that catalyses genome-wide deposition of all three methyl groups on H3K36 and is involved in many biological processes in addition to flowering promotion.
Phenotypic analysis
- Compared with the wild-type, SDG708-knockdown rice mutants displayed a late-flowering phenotype under both long-day and short-day conditions because of the down-regulation of the key flowering regulatory genes Heading date 3a (Hd3a), RICE FLOWERING LOCUS T1(RFT1), and Early heading date 1 (Ehd1).
- Chromatin immunoprecipitation experiments indicated that H3K36me1, H3K36me2, and H3K36me3 levels were reduced at these loci in SDG708-deficient plants.
- Knockdown of SDG708 led to misexpression of a set of functional genes and a genome-wide decrease in H3K36me1/2/3 levels during the early growth stages of rice.
You can also add sub-section(s) at will.
Labs working on this gene
- State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, International Associated Laboratory of CNRS-Fudan-HUNAU on Plant Epigenome Research, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai 200433,China *State Key Laboratory of Genetics Engineering, MOE Key Laboratory of Contemporary Anthropology, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai 200433, China
- CNRS, Institut de Biologie Moleculaire des Plantes, Universite de Strasbourg, Strasbourg, France
References
- ↑ Liu B, Wei G, Shi J, Jin J, Shen T, Ni T, Shen WH, Yu Y, Dong A. SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa). New Phytol. 2016 Apr;210(2):577-88. doi:10.1111/nph.13768. Epub 2015 Dec 7. PubMed PMID: 26639303.
